RNA id: XM_036973971.1


Basic Information

Item Value
RNA id XM_036973971.1
length 4569
RNA type mRNA
GC content 0.52
exon number 16
gene id phactr4b
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36317313 ~ 36368316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCCAGGTTGTTTCCGGTCATtccggtaaaaaaaaaagtttcgaTGGGGGACTGGGAAAAAGTGTTTGGTGAGGAAATGgctgagtagcctagctatattCTAGCTATATTAAATCGACTATAACCGATTTCCAAACAAGAGGAGGGCAATTCATGAGTCAGGAGAGAAGAGGGACTGAGCCGAGAGGGCATCTCCAGGGAGGCCTGAAACCTCTCCCCACAGACCTACCTACTGCTGCTGAAGACCACCACCTCCCAACACCAATGACCTTCTCCAGTGAACCGTTGACTGTTGCGCCTCAGACCTTGTAATGGAAAATCGTGTTGATGAAGTTGACCACCTGCACAACACGACGGAGGGAGATGGGGACAGCACCCCTCTCCCATGCAAGGGCAAGGGCAAGTTCTCTACCCTTGGCAAGATCTTCAAACCATGGAAGTGGAGGAAGAAGAAAAGCAGCGAGAAGTTTACGGAAACTTCAGAAGTTCTGGAGAGAAAGATGTCGATGAGGCGACCGAGGCAGGAGCTTATAGAACAGGGAGTGCTGAAGGAGCTCTCAGAGAATGAAGGGGACGATCCTCACAGCCCCAAACAGTCCTACGTGAAGAATGGCCACACCCTGCCcgtgggtggtggtggagggggcagAGGGCAGGAAAACCAGACAAGACCCCCCTCAGACCTTGGGATGAACCCCTCAGACTTTAAGATTAACCCAGCCTGGCTGCCCCAGATAGAGGACCGCAGGGTCCGATTCCCCCCGGACGTAGACCGCCAGGGTGGTCCCAGAGGCTCCGGACAGCAGGAGGAGGGCCGGCGAGGAGGTGGAGGGTCCCAGGGGGAGGGGGAATGGAAGTCTAACATGGCCTGGCAGGGCCAGGCGATGGTGCAGGGGATGGGACAGGAGGAGGGTAGACGCGGGGGCAGACTCCACCCTTCTGACGGAGACAAGCGGCCGGGCCTGCAGAAGGCGCCATCAGAGGACGGTAGGAGGAGTCGCCCTGCTGAGACCGCATGGAAACCTACCCTCCCCCGGCACGCGTCCGCAGAGGAGGGAAGGGCCCGTAGAGAATCAGAGAGCCATTTTGTTCCTGACCCAGATTTGCTGCGGGACACTCTCCGAGAGTCTCTGTCCCCCAAACAGTCCGTTATGCCCCCCAAGTGGCTGAGCTCCACCCCCGAGCCCGGCAGCGAAGGGTTACCCTCATCCCACACCCCATCCAACCACCCTGCAACCAcgtactcttcctcctcttcttcctctgcaGTTGCAATGCCTGCCCGAACTGTCTCCTCTGCAGGCGCCAACCCCCAATCTTCAGCAGTAGTGTCCTTCGCTCCATCCTCCACCCACCAGGCGACCAAGCagcctcccctccccctgcccaAGCCCGTCAACAGGGGCGTTAATGCTGCCATGTTGGCCTCCACTCTACAGGGGGGTGAGAACCAGAATGACTCCCAACTGCCCCTCTACTGGTCCTGCTGGAAACGCGAGGGCGACTATGACGTCtacctgtccctccctgtctacCTGTGCCGGCGGGATGGCAGAGGCCTGCGGTCAGGCAACCTCACCCAGGCCGGTACCAGACTGGTGCCAACTAAGCCCTCCCCACCGATGCCCCCCAAGAGGACCACCCCTGTCACAAAGCGCAACCCGGAGGACCCGTCTGCGTCCACCCAgtctgtctccaccccctccccttccctgctTTCTCCTGAGGACCATCATAACCACTCAGCAGGCTTCCAGATGCCTCCCCCGTCCCCGCCCTTACCCAACCACATCCCCCCTTCTCCACCCCGCCAGCATCTGCAAGCACACTACCTCCACCACCAGCACTCCTACCAACATCCCATCCCCCAGCCCTTGCTCTTTGACCCCCCCAGCCCCACCAGTGAGCCCCCCCAGCGGCCGTCCCCCGTCCCCCTGCACATCATGATCCAGAGGGCCCTGTCCAGCCCCGGCCCGGCCCAGCCACATCCCGACGGCTCCCAGCGCTCAGCTCACTCCCTGCTCTTCGAGACACCGCCTGAGTACCAGGGGGACCGCAGCCGGCCCCTAGCCGTCAGCATCCAGCCTCTGAAACTGGCTGAGGATGACTactcggaggaggaggaggaggaggaggatgaagaagaggaggaggaggagtatgaTGGGGAGCTGCCCCAGCCAGAGCTGGAGCCACGGAGCAGGAGGTGCATGGTGGGAGAGCCCAGCATCAATGTCATCCCTGAGGGACCCAAcagcagtgaggaggaggaggaggaggaggaagaacagcaGGACTTGCAAAGGGACGACAGCGACTCGGACGGGCCAGTGCGCTATAAAGATGAAGATTCAgacgaggatgaggaggatgagccTCCACCCAGTGCTTTGGCCAGCAGGGTAAGAAGGAAAGACACTTTAGCTTTGAAACTGAGTAACCGACACGCCCCAGAGAAACATGCTCGAGAGGACAAGTCCAGCGGTCACACCGAACGATGCACTCCGGGACAcacaccaggacacacacaccaaGGGTCAACAGGGCTGACGTGGCAGAGCAGGGAGCAATGGGAGGCCATACGCACACAAATAGGCTCTGCACTCACAAGGCGTCTCAGCCAGAGACCCAGTGCAGAGGAGCTGGAGCAGAGAAACATCCTTCAACcCAAGAaccaggtagacaggcaggcagaggtccgAGAGATCAAACGTAGGCTCACCAGGAAGCTGAGTCAGAGGCCCACGGTTGCTGAGCTTCAGGCCAGAAAGATCTTGCGTTTCCATGAGTATGTGGAGGTCACCACAGCCAATGATTACGATCGGCGAGCGGACAAGCCCTGGACCAAGCTAACACCCGCCGACAAGGCTGCCATTCGGAAGGAGCTCAATGACTTTAAGAGCTCTGAAATGGAGGTTCATGAAGACAGTAGGATCTATACAAGGTTCCACCGGCCTTAGCATCCACCCCATACTGGAAAGCACTTTCTTAACCAGTGGCTGGCGGAGTCTCTGGAGAGGAGTCGTAGGGTCTTGGTGCTCCCTAAACAGACTGCCTTTTTATGTTGCTGAATGTAAGGTACAGATCATCAAGGAAGGCCCTGGAATTGACTGAACTGAAAACAGGGGGACTGAGGACCAGATGCAGTATTTCTCCCGGACATTAGGGGGAACCAAGTGCCAACAAAGTGGAGAGCTGGCAGAGGGGCTTGACCGAGAGGACTGACTGGGAGCCACTGCCAATGTGTGTTATCCCTCAGGGACTTGGTTCCACTGACAACGACCTTTTGCCTTTTTTCTGCTTTTACTCTGTATGGCACAGTTAACCCATGTTGCAGAGATGTAAATGTAATAACATTACAGTAATAATAGTCCTAATAATGACAGCTACAATAATAAACACAGTGATAATACATGTTAGAGGGGAAGCTGCagaaagaggatgaggaggaagacgACTGTGGGATTTGCCGTTCCCCAAGACTGGAAAAGCTCTGGGATAATTGTGTATAGATTTCTGTGATTTGTTAGACTGAAACTTTGGAGAGTTCTAATAATGACAACTGTAATGCATAATATTTTGATCACAACATAAATTACTGCATTTATTTTAACCTGTTTTGTAGTGtgcatttttacattttagttacttagcagacgctcttatccagagcgacttacaagagcaattagggttacgtGCCTTGCTTGAGAGCAGATTTTTTTTTCCCGcctagtcggcttggggattcgcACGTTCTTAACCGCTAGCCTGCCCTGCCTGTAACGTTGGGGTGAGCATTTTGAGCTGATACTAGTCATAGGAAAGAACACAATGAGGAGGTAGTTGGTGTGCTATTCTTTTTATTTGTTTCGCTCTTTTTTTGCCAGACACTGATCCCCATGCTGACAGTAGAATGCTGGTTTTTCATGTCACAGATTTCTTCAATTCGCTGCATGAGCCAACACACAGTGCAATTATTGAATCAATACATAATTCTTTTTTTATTTACgcttttttattagattttttttgtacTTCTCTACATAGGTCAAACCATGCAATGCTGCAAATAATAGCTGTTTAAAAATGCTAAGATCATGATGGCATCTTAAATGAAATAAAATTAGAAATGTTACACATCTTTAGAGAATGTATCAAAGTGCAGTTAGCGTAGATCAGGATTTGATTAATCAAACATGAAAAAAATGTTTAGTGCATTTTACGGTTGACGGGGAATCATTTCGTCAGGAAAATGCTTTTTTATCTGGAGAAATGTATCATGCTTCTTCTGGTCAGTAGAttacagggtcctttgctgtacAGATGCATTTAGGTTACTGTTGTGTAATTTTTTCTTCCTtattatttgaaaataaatgttaaatatagTAAAGTATTATATGTTGCTATTTTTCTAAGTACAAAATATTACTATATAATTAAACACTACAACAATGGGAATGTCTAAGTGTACCTGTTCAGTTTTACtcatttttttttatgaaatgTAGAATTTTAGTAACTGACTATAACTAGTCAACTAGAATTAAAAACCTTAATCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286570 lncRNA upstream 693 36316386 ~ 36316620 (+) True G251323
TU286459 lncRNA upstream 55024 36261511 ~ 36262289 (+) True LOC110519702
TU286498 lncRNA upstream 101836 36215199 ~ 36215477 (+) True G251254
TU286490 lncRNA upstream 114663 36202324 ~ 36202650 (+) True G251246
TU286491 lncRNA upstream 116581 36200387 ~ 36200732 (+) True G251247
TU286978 lncRNA downstream 2774 36371090 ~ 36371290 (+) True G251694
TU286994 lncRNA downstream 25532 36393848 ~ 36394064 (+) True G251708
TU287009 lncRNA downstream 39963 36408279 ~ 36433127 (+) False G251720
TU287010 lncRNA downstream 39963 36408279 ~ 36420552 (+) True G251720
TU287011 lncRNA downstream 43637 36411953 ~ 36423468 (+) True G251721
XM_021596703.2 mRNA upstream 15744 36293824 ~ 36301569 (+) True LOC110519762
XM_021596696.2 mRNA upstream 55346 36172193 ~ 36261967 (+) False LOC110519702
XM_021596759.2 mRNA downstream 13154 36381470 ~ 36387216 (+) False rcc1
XM_021596753.2 mRNA downstream 13155 36381471 ~ 36387216 (+) False rcc1
XM_021596757.2 mRNA downstream 13155 36381471 ~ 36387216 (+) True rcc1
XR_005044177.1 mRNA downstream 289151 36657467 ~ 36659553 (+) True LOC110519932
XM_021596823.2 mRNA downstream 1050790 37419106 ~ 37424336 (+) True LOC110519936
TU285526 other upstream 1095941 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 1143850 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 1896701 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 2014406 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 2304256 34006158 ~ 34013057 (+) True G248795
TU287065 other downstream 143258 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 255294 36623610 ~ 36627542 (+) True G251845
TU288722 other downstream 1358632 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 1724006 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 2072850 38441166 ~ 38441734 (+) True G254204

Expression Profile