RNA id: TU286507



Basic Information


Item Value
RNA id TU286507
length 614
lncRNA type sense_over
GC content 0.42
exon number 2
gene id phactr4b
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36317313 ~ 36368316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGGGACTGGGAAAAAGTGTTTGGTGAGGAAATGgctgagtagcctagctatattCTAGCTATATTAAATCGACTATAACCGATTTCCAAACAAGAGGAGGGCAATTCATGAGTCAGGAGAGAAGGTATGAAATTGCTCTGTTGGCGTTCAAGCACAATGgatgcgcgtgatgatgctctcTAGATGTTATCAGTGGGATGGAGCGGTGATGTTACACTGGGTAGCAATTAGCAAGTCTCTTTCTCCTACAAAGAGGTGAGCTACAGGCTGCTGTTTGTGATTTTTAGATATGTGGTGACTATTTTTCATCCCTGTGGGTTGATTACAACTGCGTTGTCTATTCAAttcgttttttttgttgcaagAATGATAGGCTACAGTTGACGAAATAGCCAGTTGCTAAGTAGGTTAACCAGAACTTGTTGGCTACTTAATTAGTTTGAAAACAACCGCTATAGCTATCTATGCGGTTGGTTTTCTGAAGGTCCATCATTTGCCCACTGTTCAGCCATTAGCAACAGTTAGAAATGTTGCTGCGGCTTCCTTTGATATGCACAATAGGCTAAACTGAGTATATGAATAGGCTATGCCAACATGCGCAGTCAATCAGGAa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU286570 lncRNA upstream 740 36316386 ~ 36316620 (+) True G251323
TU286459 lncRNA upstream 55071 36261511 ~ 36262289 (+) True LOC110519702
TU286498 lncRNA upstream 101883 36215199 ~ 36215477 (+) True G251254
TU286490 lncRNA upstream 114710 36202324 ~ 36202650 (+) True G251246
TU286491 lncRNA upstream 116628 36200387 ~ 36200732 (+) True G251247
TU286572 lncRNA downstream 7539 36325735 ~ 36326020 (+) True G251325
TU286576 lncRNA downstream 11525 36329721 ~ 36330039 (+) True G251329
TU286581 lncRNA downstream 17174 36335370 ~ 36335580 (+) True G251334
TU286978 lncRNA downstream 52894 36371090 ~ 36371290 (+) True G251694
TU286994 lncRNA downstream 75652 36393848 ~ 36394064 (+) True G251708
XM_021596703.2 mRNA upstream 15791 36293824 ~ 36301569 (+) True LOC110519762
XM_021596696.2 mRNA upstream 55393 36172193 ~ 36261967 (+) False LOC110519702
XM_036973975.1 mRNA downstream 13476 36331672 ~ 36368316 (+) False phactr4b
XM_036973974.1 mRNA downstream 24316 36342512 ~ 36368316 (+) False phactr4b
XM_036973976.1 mRNA downstream 30050 36348246 ~ 36368316 (+) False phactr4b
XM_036973966.1 mRNA downstream 30051 36348247 ~ 36368316 (+) False phactr4b
XM_036973977.1 mRNA downstream 30053 36348249 ~ 36368316 (+) False phactr4b
TU285526 other upstream 1095988 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 1143897 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 1896748 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 2014453 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 2304303 34006158 ~ 34013057 (+) True G248795
TU287065 other downstream 193378 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 305414 36623610 ~ 36627542 (+) True G251845
TU288722 other downstream 1408752 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 1774126 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 2122970 38441166 ~ 38441734 (+) True G254204

Expression Profile