RNA id: XM_021596803.2


Basic Information

Item Value
RNA id XM_021596803.2
length 3981
RNA type mRNA
GC content 0.45
exon number 9
gene id zdhhc18a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36611815 ~ 36629130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagaatatgcatatccttgcttcagggccggagctacaggcagttagatttgatatgtcattttaggcgaaaattggaaaaaaaaggGGTCTATCCCTAAGAGGTTTTAATTAAAGGAACTATGTCCATTCGTCAGGTTAGGACGCCGAGGGATGAAAACACGTTGGTATTTCGGGTACTGGTTCCCCGCAGTTATGTTATTAACGACAGTGAGAGTATGTGTTCGGCTGGCAGATGCAGGAACGCCTCGAAATGCAGGTTGCAGTTGCACACTATTGAGTTTTTTTGGCGGAAGGCAAAGATGGCCACACCGCTTGTTGAGCATTTATCTAGCTAGAACATAATATAAGTTTGTCGTTAATTGTGAAGCAAAGGACTAAATAGTGGATTCTGGCAGTAGCATACAACGAAcgattgtgtatatatatatatgtatgtatgtatgtatgtatgtatgtgtgagacACCGTCAGAAGCTGTTTTGGTGGCGTGTCGATGGCTAGCTAACTAACGTCAGTATGAATGGGAACGCGGTCGCTGTTTTGGCTGCAATGAGCTTGATAATTGGCTAAATAAATTGCTAGAAGAATAGTgatagttagctaacgttaactggtTTGCTTGCATGGTCGCTTAATGATCTCGTAGCTAGCAGAAACATTCGATTAACGTTAGATAAATACCTAACGTTAGCCAGCCCGGTGGTTAGTAAGCTAACGTAaacagctactgtagctagctaactaacttaaTTTGATCACCGGAACCCTTTTACATTATGAAAAATTGTGAGTACCAGCAAATTGACCCACGGGGAATTTCAACACCCTCGTCAACGCAACCCTGTACCGAAAATGTGCAGAGGCCTCGGAGAAAATGGGAAGTATTTCCAGGGAAAAATCGTTTTTATTGCGATGGACGGATTATTCTGGCCAGACAAAATGGTATCCTGCCTCTGACACTCGGCCTTATCATTGTCACAAGTGGCCTCTTCTTTGCATTCGAACCAGCTTTACAGACCCTGGAATCCTGCCTAGGACCTTGCCAGATGAGGCTGCAGACATTGAGAAGCAGATAGACACCTCAGGTTCCTCCACGTACCACCCCCCTCCGCGCACCAAAGAAATCCTCATTAACCAGCAGGTGGTGAAGCTTAAGTATTGCTTCACCTGCAAGATGTTCCGCCCTCCTCGAACCTCACACTGCAGCATGTGTGACAACTGTGTGGAGCGGTTCGATCACCATTGCCCGTGGGTGGGGAACTGTGTGGGCAAGCGTAACTACCGCTTCTTCTACAGCTtcatagtctctctctccttccacacctccTTCATCTTCGGTTGTGTTGTCACACACCTCACGCTACGATCCCAAGGAGGGAATGGCTTAGTTCTGGCCTTACAGGAGAATCCTGCCAGTGTGGTTGAACTAGTTATTTGCTTCTTCTCCATTTGGTCTATTCTGGGGCTTTCAGGTTTCCATACATACTTGGTGGCCTTCAACCTCACAACAAATGAAGATATAAAAGGCTCCTGGTTGAGTAAAAGAGGTGCAGAGGACTCTGGGAATCCCTACACTTACGACAACATCTTTACCAACTGCTGTGCAACGCTGTGTGGGCCCATGCCCCCCAGTCTAATTGACAGAAGAGGCTTTTTACCCCCTGAAGACATTCCACCTGCTGTTGCAGTGGACATGGGGCGGCCCCCTTTCCTGGCCAAGAATGACACAAACATGTGCACTCAGAGAACCAAGGACCTTCTGGAGAGGGTGTTCCGCTCTTCTGAGCTCCAGGGCCTCTGGCCCACTGGCACCCCCAAGACTGCCCCTGGCCAGGAGTTGAGAGTCAGACCAGAGTCCAGGTCCCCAGCCCCCTCCTCCTCCGCTGGGCCTCCCACCTCGAGCTGCTCAGGGTCTGCTGATGGGCCTCTCCCCACCGGCTGTTCTGGGTCCGCCAATGGGTTTCCCCCCACGGGCTGCTCTAGTTCTGCCAATGTGCATCCCCCCACAGGGTGCTCAGGGCGCCAGGCCCCGTCCATGGAATGTCCCCCTGTGAACAGCAGCAAGAGACCCTCACTGCACTCCAACAACCCGGCCTTCCGCCTGGCcagtccctctccctccttcacccacAATACCATCATCCTGGGAGACGCTCCTGACATGGGCTTCATCCCACTGCACTGAGCAGACTCAGTGGCTCCAGTAGGACTGCTTCAGTGAACATTCCCCTTCCACACAGCTCCCTGGAACTCATTAGTGGCTACACTGCCATTAACCTTTGTACGGgcattttttttaaccattctcTTTTTCATGGAACTTACTACGTCTTCTTCTAAACTCAGGACTTAAGCCAGTGTTTTCCCCTGTCCTGTTGGTGATGAATTAGCTGGTAAACATTATTTTCATAGAATGTTTTATTCCTCAAAGGAAAGATATCCTACTGGCAGCAAGTTAAACTTGGTAACACTGACAAGCATAGATTTTATACAAATTTTATACACTGATTCATAGAACATTGTTTCACAAAGCTTCAAGCCATATGTACTCACTTGGCTGGTGTTCCAGCATAGTAACTAAGTAAGCAGTCTCTTTGCCTTTTATGTACTCAGTTGTATTACCTCTTATGCAAATCATTCATACACTTATGGCAGAATAGGGGTGTGTGAAAGGGCTTTTGTTAGTGGATAAGTAGGTTTTTGGCTACCTGGCTTCCTATGCTCTTGGTCTTAGCTGTAGTGAAAACACCCAAGGTCTCCCAGTGTAAAAGGGCTCTTTGAAGTtccactccctccttctctactgGCTTTTGGATCGGCCATGTTGTGGACATTGTTACGTATGTTTAGTCCTTGGCTGCAGTTGAGACAGTGACTCATTTTGATTGGATGAGACGAGCTATTGTCCGTAGTGGGCTGTTTCCCAAGGTTGCTGATGACTGACATCGTAATCTGTTGGGCCTCTGTTTGTTATTTATCTTCTACTTAGGCTCAAAGTGTTCAGATTGATTGTTGGATTtaaactatatttatttctcactgTGTTTATGAGAGTGTCTGAGGCAGAGGGTGTAAATGTGATAGGGAATTTATTCTGGTATTCTGTGTTTGAACTGACTTGTACTAGACTTTGACTGTCCAAGCTAAATGAACATGTGCTTTAGGAAAAAAGTTCATTGTGAGCTTGCATTTTTGATTGTCCTTTTTAAATGTTCCTTTTACATGTATTCTAATTTAAGCACGGATCCAAATACAGATCCACTACTGCCTGCTGAGTTTCTTGTGTTTTGGAGGCCAGTTAATATATTTTGACACAATGTTAACTGTTCAATTAACCTGCTAAGGATATTGAAATGTGACGCCTGGTTCCCTGTTTTTCCTCATGCATTTTTACTGTAATGACATATTGTTTTTTTGTAGAGAAGTAAGGTAcagatataataataataatgtgataTGTAACTGTTTGAAGCACAGAACATCTAGAAGTGTAAGATGATACCGCTTGCAGGCATTGCCTTGAAGTGAACTTTGCCTGTGCTGCTAGTGGCATGAAACCATATATCCCTTGGACTGGTCGTTTATCATAGACTACTTATCTGTAACGTGACATTACACTGAAGGTAATGCCGTTGGCCACAAGGGGGCGTTATTTTTTTCCCCAAATAACACCATTATTACGTTCTAGGTACCTTTTTATAGACTGTAGAGCAATTGGGGTAGGTCCATTGATGCCTACTTTTCCTTCAATATACTTAAATGaactgtgtgtgtagttgtggaGGACCGCTGTGTGGTAGTCAACCATTTGTGTATTCGTTCATTTGAAACCTTATAACTAGGTCAGTTGTATCAAAGATGTTCAGCGCTCCTACAACTGTTATTATGACTATAAGCTGTGCTTGTACTATTATGGGCTGTTTGCTTTGGTTTTGTAGTCTGTAGATCATTCCTGTGAGGATTAAACGGAGGAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287483 lncRNA downstream 6161 36604263 ~ 36605654 (-) True G252136
TU287613 lncRNA downstream 19736 36591640 ~ 36592079 (-) True G252260
TU287608 lncRNA downstream 26343 36585238 ~ 36585472 (-) True G252255
TU287604 lncRNA downstream 28158 36583441 ~ 36583657 (-) True G252251
TU287601 lncRNA downstream 30167 36581391 ~ 36581648 (-) True G252248
TU287590 lncRNA upstream 29769 36658676 ~ 36659052 (-) True G252237
TU287585 lncRNA upstream 30995 36659902 ~ 36660296 (-) True LOC110519931
TU287640 lncRNA upstream 116133 36745040 ~ 36782278 (-) True G252284
TU287659 lncRNA upstream 138506 36767413 ~ 36821166 (-) False G252299
TU287657 lncRNA upstream 139297 36768204 ~ 36769641 (-) True G252299
XM_021596781.2 mRNA downstream 43262 36544170 ~ 36568553 (-) True tent5ba
XM_036964824.1 mRNA downstream 106476 36486875 ~ 36505339 (-) True LOC110504056
LOC110519907 mRNA downstream 174061 36436381 ~ 36437754 (-) True LOC110519907
XM_036973958.1 mRNA downstream 494271 36112187 ~ 36117544 (-) True stmn1b
XM_036973959.1 mRNA downstream 494895 36112187 ~ 36116920 (-) False stmn1b
XM_021596804.2 mRNA upstream 7422 36636329 ~ 36643205 (-) True LOC110519930
XM_021596807.2 mRNA upstream 30317 36659224 ~ 36664239 (-) False LOC110519931
XM_036973988.1 mRNA upstream 30317 36659224 ~ 36664239 (-) False LOC110519931
XM_021596806.2 mRNA upstream 30317 36659224 ~ 36664245 (-) False LOC110519931
XM_036973992.1 mRNA upstream 35822 36664729 ~ 36684073 (-) False LOC110519933
TU286962 other downstream 253844 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 467243 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 1715519 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1721861 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 2252364 34357275 ~ 34359451 (-) True G249485
TU287636 other upstream 102938 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 2770354 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 3015664 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 3189741 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3693599 40322506 ~ 40322898 (-) True G256616

Expression Profile