RNA id: XM_021596804.2



Basic Information


Item Value
RNA id XM_021596804.2
length 6605
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110519930
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36636329 ~ 36643205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctgccaccctatgaTGTTACTAATATGTCAGAGgtgacaaaatacaaaacaaaacaaagtgaGTAGAGAGCCCAGGGATGTCAATGCTATTATGGAGCCTGGCCCTACACTCAACAATGCTGAGAACATAATTGATGTACATAGGGCACAAACAAGACAGAGAGTACATATGAAAGCGATCTTGACAGTTCTGATAGGGAGGCGAGCCCCTGCCAACATGTATGTCCCATAAGCATGTCCAGGACAAACTTGATGTCCAATGAGCTGGTAAACCATGCTGGAGAAGGTTAGCTCTATGATTGCCAAGGAGGGAATTGAGGTAATGGAGTTTGAGAAATCCATCCAGTCATCTAGCAAGTCATCCAGCCAATCATCCATCCTGCACTTTGTTGTGTGTCAGGTGGCCAGGCCCACCACCGAGGGCAGAGGAGGACTCCAGCTCTGATTGCAATATTCTGGGCGGACATTCCTCCAATATGACCTCTCCTACACCCCTAGCATTGAAAGAAGAACTGACACTCAGTGAGATTGAACCTTGTGCTGATGAAATCATCAGTGTTATCTTGCAGAACATTGAGTAAAATACTGAGGACGAAGGTGTAAGTGAACTGAAGAATGAGCCCATGAAAATCAGACAAGTGACACCACACAGACATTGGTAGCGATCTTCTGTTGTCAGGCTTCCAAATATGCCATCATGCAGTCAAGGTAGCTCACAGTATATTCCAGAAGATCAAAATGCATCCTGTCAAGATAGATCAGAGCGATATCCAGACAGGGGTGGACAGCAAAGAGCAGGTGGATGGCATCCTTGTTCTAGAGATTGTTGAAACTGCATTGGAGAAGCTGGATGATCATGTGAGGAGGGATTCCTCTGAGACAGATGCTTCTAATAGGAGCCGAGGAATATCAGAGAACTTCTAACTAAAGATGAAAAGGATCTCAATTAAGCCAGTCAGGGCTGTCCTCGACAAGGTTGTGGCAAGATTTGGCAGCTCTAGTGAAGACACCCCATCGCTGAACTTCCATACAACCACTACAGCCGAAAAGTTTCCGTGTGTGCTGTAAGGAGTTGGAGAGTGCTCTCTTCTTTGGCTGCCGATATCATATCTGTGGTCCTGAATAAGCTCATGGAGACCTCTGGTGGTAAAACAGCTGCTTGCTCAAGTCAGATGGAGATCAAGAACCTTGTCTGAGCATTGTCTTCCAAAAACCCAGAATCTCTTCCGACAGATTCAGGGTCTCAAATTGAATTGGTGTCAGAGGAAATACTTCAAAATATTGTTggaaagctaaaaaaaaaagataatcaGACAGGAGTTTGAGTAATTCAGGGGAACAAATAGAGTTTGGTTTTCCATGTGAAGCTCAGGATTTTGTTGAAGAAATCTTACAGACACAGTCCAGGGTCAGACATTAGTCAGTATGGGCCAAAGGCAATTGGCCATGTTTCCTCCTCTATTTCTTAGACATTCAAACACACAAGTGAGACTCACCTCCATAAAGACAATGTAAAGACACCTAGTAAACATCACGTCACAATTGGgaatgagaccctggtctcaattgggctaccctaaataaataaaagtttatAAATAAAACAGATCACCTGCTCTCTAATTCCCTGCGTGACTAGCACAGAGCTGGCCAAATTCCGTGACTCGCTGTCAAAGTCAGCTACGTCTCTTCTGAAGGAGACATATGGTGAGCGATCCACAAACCTCAAGATGGAAAGGGAACTTCCAGCCTGCATCTCATATCAAAGATTTGAAAACCTGGTGATACAGCCTTACATGTATGTAAAATAACCAGGTGATACAGCCTTATGTAAATAGCATAGACATCATTGTAccgagagttacagtagaggcgTTGTTCCCTATTGCACATGGACACACAAAGGAGTGTAACCAGGAAGCTCAACATCCTTTGTCTGAAGTCAAGACTAAGACAATACCTCAAACAATGCAGTGCCCCTGAGAACAAACTGACCTTGGCCCTTGACACTGATTGCAGTCGTACTACAGATACCTGTCAGCGAAACTACATGCAAAGCTGCCAATATCCTCCATGTACTTACTCAAATCCACAGTGGAGAAGTTTGTGAAGGTGATGGATCAGTGCAAGCTACCGGACATCCTCTCATGTCAGTCAGAGTAGGGAGTGCTTTGAGCGAAATGCAGCCTTCCTAGAGTGGTGACGCTGAGCTGATGATCAGTCTGGACTTCAGGCATCAGGGGAGGAGCTGAAGATGAACACAAAGAGCTCAATGATTCATCACCTTCACTCTGTGATGTTGTGACCGAGTCTATGATTTGCTGTGGGATAACTCTCCCCAGGCCTCAACAAGCAACACAGGTAAGTCCACAACTATCATCTTATTTAAAAGTTAAAAAGTTAGGGCCTCTCTTGGCGAGGCACTTTTCTGACCAACCAAATTATATTATTACATAGGCCTACCACAGCTTCAGTTTTTGTAGAGCAAATGTATCCTTTATGGAGAGGGTTGATGGGTGCTGCTATttttcctatttcacacatgtacaagtgtgtatcaatacgcatgtgtgaattggaaatttGCTTTTTGCATATCCCTCGGAGAGTGGGTTCACAGACTTGAGCGTATTTACTCACATTAACCTTTACTAATAAGTACAGAATGAATTCCCTCAATAGAAATTAGATATTTAAGTATGAGAATAAAATATCTATTAGCGCCTGTCCATGTTAATAATTTGTAGTCTATGCTTTTATGATTCATGTTATGTAGGTGTTAAAATAGGCTGCTTTTGTGGAATGGAAGTTACCTGAAAAACATCAAAGCATTGAGCATTGAGCAGTAAATGATCACAAAAAAAACAATGTGTGCATTGATCAGtagtaattacatttttattcaatTAAGGCTACAATGTTATTTCCTATACACTATTTGGTTAATCAAAAATATACTTAAAAAATGAAACTGGTAGTTTATTTGAAAGTGACCAAAGAGATTCTGGATCAATTCAGATGCATTATTACATCATGTGCACTTGTACCATAAAGATAGTGACTGTTACATCACTATTACATCATAGAAGTGGTTTGTCAGTGTGGCATTATTATAACAGAGAGTGATGGTTATCAATAACTGGATAATTTTTTCCTGAGGGTAAGAGAAACGTATCCACTGAAGACCTTTTTCAAACAAAATAGAAATAGAAGCTATCGCATCCGCAATATTGTCATGATCTGTACACTAGTCATGTTAAAGAAGATTATTGGCTTGGTGGTCATTCTTTGGCCAGTCACAGAGATACTCAATTGACAAAAATGACTGACTGGCCATTTGGTCACCATGTTGTAGGACTTCAACACCACAGATTATGTTTCACTTACCCCTGTGTTTTTCAGATGTGAAAAGGATCATGTGGTCTAAATGCGTGAAACCTGAACTTCCCTGGCACAGTAAGGCTGCCAGCAGTGTGAGAAGGTCTTTTGGGAAGATGTCACCAGTCAAGACCGCCGTGCACACTGAACAGGAGCCTCACATCAAAGCCACCCAGAATGAGGGAAAACCCAGCCAGTCACAGGCCAAACACCATGAGACACCTGTATGGGCCCAGAGAGCCAAGGAGCAAATTAAAAGTGCATTGAAGCCCCTGGAATCACCAGCCAATAAGGAGCCAACCTTAACAACTGCACCACAAACACCTGAGTGTAGCAACAAGGCAGGATGGTTTAATGTACTTGAGAACCAGCCCAGGACAAAGTCAGCCCGGCAGAGTGTGAGGGTCCATCAGATGACACCAGATGACGTCAGTCTATTTTATTTGATTGAGAATCAACACGCTCAGCAAGTTGAAACAATTGAAGATATTGTGACCTGCTTAATAGGCGAAATCTATTATAATGAGACAGGTACTCAACTAGACACCCCCATTCCTGGCCTGAGTGAAACAGCTTTGGACCTCATTGATAATGTGGTTGATGAGTTAAATAACACCCCAAGTGACCTGTTTGGTTTACATACCGACGAGTCTCTGGTCCTCCCATCTAGTTATAAACATCAGGTGGCCAAGAGTGTTCACAAAGAATTGCTTTCCTGCACTGGTTCCCaagaaagcttgtggaaggctgtaTCATCGGGACACATGGTGAAAGAGATTGCCAGCTCAATCTCTCTGGAGGTGTCCAAAGTAACCAGCAAGATTGGGGCTGTCTATCACACTAGTGTCGATCACACTGATAATCCAATCTCACCCGGACCCAGAACAGACACAAATGCTTCCTGGGAGTCCTGTGCAGCCTCAGACATCTCTGAAGATCTTGTCCTCAGAATCCTAGACTTCATATCATACTGTCGGTCACCAGACAGCACCTGGAATGGGCCACAGAGCCGATGCTCCACTGACATGACCGGAGATCTCATGGATGCAGTCATGGTGGAGCTCTTCACTAACACAGCCATGCTGACGATTCCAGTAGGTGAGCACCAGAAAAAATTGTGCAAACCCTCCACTACAGATCTGGAGAAAACTGCCAGATTAGTGTATAAGAAGATGGTAAAGGAAACTGGCTCAGCTGAGGCTTTGCAAGACGCTCTCAAGCTCAAAAGGAAGTGTGTAGTCACAGCACTGGCTGACGTAGTGGCAAAGCAAGTGTACAAGCTCTTCTCAGAAGAGGAGTCAGACTCCACATATCTCCCAGACCAAACCCGCCACAAAGATGACTGCCCTGTTACAAGCCACAGTAACAGACAACTCACACCTGAGCTTGCTGCTGCTCAATCTGCCAGTGAGTGCATAGTGAACTGCAAGGCTGTGTGGGAGATCATCTCCAGACTGCTGCAGGAGATTTGTCCTAACGTGCCCATGGATGAAAAGCCCCAACTTTATGCTCAGGATCTTTTTCATAGTGCTATAAATAAGCTGTCTGAGTCTCCAGGGGTAGCAGTATGTGCTGATGAGACTATCTGTGACGTCTGCCGCCATCCACAGGCCATTGAGTTAATCTGCGGCCGTGTTCTGGAGTGCCTGCAATATCAGATTAACCTCATGGGCTACAATTTAAGCTCTGCCCTGGATGCCCAAGATGAGGCTCTCAGCTACTTTATTGTTGCTCATCTTGTGCAAGAGACCCTGCTGTTGATCTCAAATCAGACCAATGGCAGCTCCCCTGAAGTAGACTCAGGTTCCCACCATCAACCTGAGAGTCAAACACAACCATGTGTAGTGAGCAGCAAAGTAAATTATGAAGATTGGCCCACTTGTCAGTCAAACATCACTGTACCAAAGGGCCATTCCACCATTTCTGCAACCAATGGCTTGTCACCTAGGGCTTGCCTTTCCACTGTTTCTGCAACCAAGGGCCTACCACAGATGCCAGGTCAAACGCCACCATATGTAGTGAGCAGCAAAGTAAATTATGAAGAATGGCCCATGCGTCAGTCAAACATCACTGTACCAAAGGGCCATTCCACCATTTCTGCATCCAAGGGCTTGTCACCTATGGCTTGCTTTTCCACTGTGTTTGCAACCAAGGGCCTACCACAGATGCCAGGTCAAACATACACTGGCAGAAGAAGGCACACAGTCCTGAGTGTGAAAATAAAAAAGCACTCTCACAGAGGAATTCATATCACACCATCAGAAAGGATAATTCGGTTGAAGGAAATGCAGAGGGAGTCATCTTCTGAGGTCTCATCAGTTTCAGTGGAGATGTTTTCTGAAAGCCATGGACACAGAAGAGGGTGTTTTGGATGGCTCCTCTCTAAGCTTATGTGCACTGAAGACATCCACTGGTTCGAGTAATGTTTGAGTGTAACCAAACATTCAAACCTAAGGTGGAGGAATGTAAATAAATCAAAGCAAGCCTACTTTGACCTATTATTGTGATTCAGTAACAGGTGATTCACCATGGTTTCAGTAAGTCATAGAATTTCCATTATATGTATAGTCATTTCGGCTGCCGACCTTCCATAGCTAGCTAAGTATATGACACAAACATTATTTGCTGGTTTGAATGACGCCTGAACAACAGCATAGCATATTATGAACACGGTGCCAGAAACATTCCATTTAAAAAcctacagtgacttcagaaattattcacacaTTTCAttatattgtaacgaccctgggtttaaatgcatgagcatgcttttgcggcacagtcgatagtgcGCCGGACCTCAgactagaaggtcgagggttcgagaacTGCTCCTGCTGTTGCATTACAATATGTATAGTCATTTCGGCTGCCGACCTTCCACAGCTAGCTAAGTATATGAAGCAAAGATTATTTGTTGGTTTGAACAACAGTATAGCCTATTATGAGCACAGTGCCAGAAACATTCCAtaaacaaatatacagtgccttcagaaagtattctcactagaacaataacctaaaatgcaCAATCAAATCTACACCGGAGTTGCTTGCCAAGAAGACACTGAATGTTCATGAGTGGCATAGTTACAGTTtatacttaaatctgcttgaagaTCTATGGCAAAACCTTGAAATGgttatctagcaatgatcaacaaccaatttgacagagcttggagaaaaaaaatgaaaaaattatgaagaaatgttgcacaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU287483 lncRNA downstream 30675 36604263 ~ 36605654 (-) True G252136
TU287613 lncRNA downstream 44250 36591640 ~ 36592079 (-) True G252260
TU287608 lncRNA downstream 50857 36585238 ~ 36585472 (-) True G252255
TU287604 lncRNA downstream 52672 36583441 ~ 36583657 (-) True G252251
TU287601 lncRNA downstream 54681 36581391 ~ 36581648 (-) True G252248
TU287590 lncRNA upstream 15471 36658676 ~ 36659052 (-) True G252237
TU287585 lncRNA upstream 16697 36659902 ~ 36660296 (-) True LOC110519931
TU287640 lncRNA upstream 101835 36745040 ~ 36782278 (-) True G252284
TU287659 lncRNA upstream 124208 36767413 ~ 36821166 (-) False G252299
TU287657 lncRNA upstream 124999 36768204 ~ 36769641 (-) True G252299
XM_036973980.1 mRNA downstream 7199 36611815 ~ 36629130 (-) True zdhhc18a
XM_036973981.1 mRNA downstream 7301 36611815 ~ 36629028 (-) False zdhhc18a
XM_021596803.2 mRNA downstream 7422 36611815 ~ 36628907 (-) False zdhhc18a
XM_021596801.2 mRNA downstream 7426 36611815 ~ 36628903 (-) False zdhhc18a
XM_021596793.2 mRNA downstream 7427 36611815 ~ 36628902 (-) False zdhhc18a
XM_021596807.2 mRNA upstream 16019 36659224 ~ 36664239 (-) False LOC110519931
XM_036973988.1 mRNA upstream 16019 36659224 ~ 36664239 (-) False LOC110519931
XM_021596806.2 mRNA upstream 16019 36659224 ~ 36664245 (-) False LOC110519931
XM_036973992.1 mRNA upstream 21524 36664729 ~ 36684073 (-) False LOC110519933
XM_036973990.1 mRNA upstream 21524 36664729 ~ 36684074 (-) False LOC110519933
TU286962 other downstream 278358 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 491757 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 1740033 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1746375 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 2276878 34357275 ~ 34359451 (-) True G249485
TU287636 other upstream 88640 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 2756056 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 3001366 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 3175443 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3679301 40322506 ~ 40322898 (-) True G256616

Expression Profile