RNA id: XM_021596806.2


Basic Information

Item Value
RNA id XM_021596806.2
length 4610
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110519931
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36659224 ~ 36664245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAATTTAGCGGACCAACCAGTTCCAACAATAGAATATGAAGGTTTCTGACCTTAATGTCTATGGTTCTGACCAGGCTCCTCTAATCAAAAGTTTGTAGAGGCTGAAAATCGTGTTGCCTTCGTACCATCCACACCAAGCTAGCTTGCGCTAGATATTGTTATGGGAAAGGCTGTTCATTGTAATGACAGATGGACGTGAAGACGGTTCTGCAATTTGCCGCCACCACAAGAGGCTTGTCACTACTAATACAGGCTCTCCTAAATGCTGCAATCCCAGATCACGAAGCTGATGCATTCACTCCTCCACGTGCAGAGGAGCCTCGGCTTCTGGACCCTGCAGTGCAATGGTTTCTAGGGGGCCTTTCCCACTGGGATGCAGAGCATTTCCTCTTCATTGCTGAGAGGGGTTACCTGTATGAGCACAACTACGCCTTCTTCCCCCTGTTCCCTGTCATACTGCGGGGGCTTGCAGAGACTATACTACGGCCCCTCAGTGGCTGTCTTACACTACGTGGACGCCTGCTACTGGCTGTTGCCTTGGGTAACAGCGCCCTCTTCCTGCTGAGTGTGGTAGCACTGTATGGACTCGGCCGTGTGGTGCTGCAGGATCGCCGTCTTGCTCTAGTCTCAAGTTTACTCTACTGTCTCACCCCTGCCAATGTCTTCATGACTGCTGGTTACTCAGAGAGCCTGTTTGCTGCATTGACCTTCGGTGGCCTCTTTCTCCTTGAGAGAGGATACACCTTCAGAGCCTGTCTGGCTCTGAGTATAGCTACTGCTGCGAGAGCCAATGGACTTGTTAATGTAGGATTCTTGCTGTATCTGCCCCTGCAACAGGCCCTGTCCAAGATCTGGGGACTGCGTAAGGACAATAACAGGCACAACAAATGCCTCCACTACACCTGGATCATCGCACGTCTCCTGTTCACGGCTGCATTGGGCACAGCAGTTATTGCGCTCCCCTTCTTGGTCTTCCAGTACTATGGGTACAGGGTGTTCTGTACACCCTCCCTCTCCTTGGAGCAGGTTTCCCCTGCCCTCATCCAGCTTGCTGAGGATAAAGGCTACAGGGTCCCTGACGAAAACGCACCCCCACCACTCTGGTGCCTGCGACCCCTCCCCTTGCTCTACTCTCATATCCAGGATGTGTATTGGGATGTGGGCTTCTTGCGCTACTTCCAGCTTAAGCAGATACCCAACTTCCTGCTGGCACTGCCCATGGCAACTCTGGGCATGGCGGCAGCCTACATGTACTATAGGGCTAACCCAACCAGGTGTCTGAGACTGGGGCTGTGGGACGGAGGGGCAAATAAACGGCCAGACAAACCCACACCTGGATTTTACAGCCCCAGggtgtttttgtatgtggtgcATGCTACAATGCTCCTGGGATTTGGAACATTCTGCATGCATGTGCAGGTTTTGACCCGgtttctgtcttcctcctcccctgtacctttctggatcagtGCCCACCTGCTCTTACTCTACGAGCCTCTCCTTCAGCGAAGGTCACCACCCACATACAATAAGGGGCAGCAGCGGGGGACACCTAGGACTGTCTTCTTGTACTTACCCCAAAACCCCATTGTTCATCTACTGTCCCGCTGGAAGACATGCTCTATTCCCACACGATGGATTCTAGGGTACTTCATCTCCTATTGGCTTATGGGCCTGGCACTGCACTGTAACTTCTTACCATGGACTTGACCTGACACTTTCTACTGAAGATCTGATGTGCGCACAAAATACTATTTGAGGGCAATAATAATAGCTCTGAAGCTTGTCATTTTCTGCCTGCTTCATAAATAGACAGTTCTGTTTTGAGATCGCAACTGGCTACTCCCCTCTGTTAGTGTTCGGCAATAAAGTTCAAGCGTTTTATTTGCACTCATCTAATTTTCAGAAAATTGCATATTTTAATATTTCTTTAACAAGAAAAACATTGGATTGATTCGTAATCCAGCATTGATGCACTGATTGTTCCATTATATCAAATTGTCTCTGAAAATGTACAGGGTGCagtttgtgcatgtgtttgtttACTAAAGAGATACTGTAATAAAGCAttgctgtgttttttttaaattaacaatTAAAATAGTATGCGTCACAAATAATTAGCGTTTGTTGATTAGATTCTGCTTGCAGCATTTCAACCATTGATTTCAGCACCACCGACAGCAAGCCTTTCAAGTTGAATGAAACACCTAGAAAGTTAAGATCTTAAGTaaattaagctagctagctagcgagctTGCTGTATTTTATACAGACCGTGCATGCTACTGTAGCTGACCTGATAAAACTTGCATCATTACTCTAGAACATTACTAGCAAATGACATTGAAACATGAAAGGTGAGCAGTGCACATAATTATGGAGAGTCTAAAAACAGACGGTCTAAACTCAAAGGCGAGTGTGAACGTATTGTTTTGAATTATGACCCAACCGAAGCCGCGCAGGCGGGTTGTCCACTTTGACGCCTAGCTCAATTAGAACGTATTTGCTTTGGCGCTGTAGTCACAAAACAAATGTCATTCACTTTTTTCAAGCTCATTTGAATTGGAAGTGGTAGCtgtctgatgagtatgcaggccatggaagaactgggacatggggccgtgcattatcttgctgaaacatgaggtgatgcctCAGgacctcgtcacggtatctctgtgccgtcaataaaatgcagttgtattcattgtccgtagcttaagccttcccataccataaccccactgccaccatggggcactccgttcacaacgttgacatcagcaaactgcttgcccacacgatgccatactgggattcatccatgaagagcgcacttctccagcgtgccagtggccttCCCACTGGTCAGTTATGACGCCAAACTGGAGCCAGGTCAAGACCCTGCTTGAGGACGGCGAAGATGCAgacgagcttccctgagatggtttctgacagtttgtgcagaaattgttcggttgtgcaaacccacactttcatcagctgtctgggtgatcccgcaggtgaagaagcaggatgtggacGTCCTGGGGTGGCATCGTTACAcgtagtctgcggttgtgagtcCGGTTAAGCgccctgccaaattctctaaaacgacattatggtagagaaataggCTCTATGCATTATACCGCCTCCAACGTTCTAATTTACTTCCGATCGGGTTTATGACTTCCGGAGCGAGTTCTGCTATTGATTTTATCATTAGCTTACTAGCTATCGTCAATGCATTTCTGACAGAAATAGTTCGCAATGACTACATTTAAATTACAGCCCCGCGAAGGAGGTGTTAATGAACATTGTTCAGTGCCTCTGTGTTCAGTTTCTTCCAAATGTGATGGTATTGTGAGCTTCCATCGTTTCCCGGTCGATGTAGAGCTCAGAAAAAGGTGGTTGGTGGCAGTACGTCGTGACAACTTTGCTGTCAATGTGTACTACACACCATTGTGTGTTTGGTACACACAATGGTGTGTAGTACACATTTCGTTCGAAAGTGACTTTGTTGTGGGAAAAATGGGGGGGACGACACCTAAAAAGAGGTGTTGTTCCTACTGTCTTAGCGTGGAACTGGCACATTCAAAAGAGACCTGGTGTTTGGGGAAGATAAGGTCTGAAAACCTCCTGCTCCGACTGAGGGGGATGAAGAACAAGGTGCGCTGCCTGTGGACTGTGCCGTCTCCGATCCGGTCCAGAGCATGGGCCAAGCCAGTGTAAATGTACAGGTGTTTATTTGCTAGTAGCAAAATTATAATTTGTTTATCTACGACATGTATCAATAATTTGTGTTgtagtgaatatcagtttgtgtgGAGCTTGTAATTGGCTTTAATTAGACAATGAGTGACAGGGGTGGGGGGAAAGAAATCAAGTATAGCCAGAATGCAAGATTGAATACAATGTTAGAGATGTGTAATTGATTAACTGAACTGTTGAACATTTgctgatttaaaaatgttttttttttaacaaatctatTCTACTGTAGATTTCTTCACAAGAACATCACTACTTATTTTTCATAAAACCACTAAACTTGGCACGGGGGGGGGCatgcaggggatccattcaggtgCGAGAGACACTTCTGCAAGTAGTGGTAAAAATACAAGTGGTCAACCTCCTCTCATAGTTTTTGAAACCTGTAGATCTTTATATATCCTTTCAACTAGGATGTCCTCCTGTGCACAGCTGACAAAGTCACACCAGCTACAACCTGTGAGAAGGATTTGACCTTGCACCTGCCAGTAGTAAGCATGAGATCTCTTCAACTTCAGCTCTCCATTCTGTATCTTCAGGTAAGGGCCGTCAACATAACTTGGTACCTTTGGGCACTTGACCTCTAAGAGTCCAAAGTTTGGTCTCACACTGGGATCAAATATGATTCCATCTGGAGAGGATCCTAACCACGGAGCATCTGGGTGCACTGCGAAGCCACACGGAAAGATGTTAACATTCTTCAGTGTGCAGTACTCCTGTACAGCCACTGGCTCCATGGCTAGCCCTCTTCATCTCCATGGTCTGTATTCCAGATCCCTGTACAGCCACTGGCTCCATGGCTAGCCCCCTTCATCTCCATGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287590 lncRNA downstream 172 36658676 ~ 36659052 (-) True G252237
TU287483 lncRNA downstream 53570 36604263 ~ 36605654 (-) True G252136
TU287613 lncRNA downstream 67145 36591640 ~ 36592079 (-) True G252260
TU287608 lncRNA downstream 73752 36585238 ~ 36585472 (-) True G252255
TU287604 lncRNA downstream 75567 36583441 ~ 36583657 (-) True G252251
TU287640 lncRNA upstream 80795 36745040 ~ 36782278 (-) True G252284
TU287659 lncRNA upstream 103168 36767413 ~ 36821166 (-) False G252299
TU287657 lncRNA upstream 103959 36768204 ~ 36769641 (-) True G252299
TU287737 lncRNA upstream 228288 36892533 ~ 36898281 (-) False LOC110504063
TU287741 lncRNA upstream 228288 36892533 ~ 36906191 (-) False LOC110504063
XM_021596804.2 mRNA downstream 16019 36636329 ~ 36643205 (-) True LOC110519930
XM_036973980.1 mRNA downstream 30094 36611815 ~ 36629130 (-) True zdhhc18a
XM_036973981.1 mRNA downstream 30196 36611815 ~ 36629028 (-) False zdhhc18a
XM_021596803.2 mRNA downstream 30317 36611815 ~ 36628907 (-) False zdhhc18a
XM_021596801.2 mRNA downstream 30321 36611815 ~ 36628903 (-) False zdhhc18a
XM_036973992.1 mRNA upstream 484 36664729 ~ 36684073 (-) False LOC110519933
XM_036973990.1 mRNA upstream 484 36664729 ~ 36684074 (-) False LOC110519933
XM_021596816.2 mRNA upstream 484 36664729 ~ 36685864 (-) False LOC110519933
XM_021596812.2 mRNA upstream 484 36664729 ~ 36685865 (-) False LOC110519933
XM_021596810.2 mRNA upstream 484 36664729 ~ 36685866 (-) False LOC110519933
TU286962 other downstream 301253 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 514652 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 1762928 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1769270 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 2299773 34357275 ~ 34359451 (-) True G249485
TU287636 other upstream 67600 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 2735016 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 2980326 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 3154403 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3658261 40322506 ~ 40322898 (-) True G256616

Expression Profile