RNA id: XM_021596816.2


Basic Information

Item Value
RNA id XM_021596816.2
length 9127
RNA type mRNA
GC content 0.56
exon number 20
gene id LOC110519933
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36664729 ~ 36686126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTAAATATCAAAACCAAGTTGGGGGCTAAAATTGATATTAGCTCAGAATTTTAGAGGGAACAATTTGCCAGAACGAGACTACTAATGCACCCTCACACGAATTCGCTACCCACcccctctcggtctgtctctctttcccaacGGCAGCCGCGCTAGCAGAAACACTCCTCTTGTGAGTGTGGGGGATGGGCAGTGAACACAGCTTTCTCAGCCGCCAACATTGAACTACGCTGGCCAACCTTGACCTTGCCCTGAGAAGGAGGGGAATCACACTCATATCAATAGTTACTCAGAGTCAAatgtaaaacacatttttattaacATTTTAGATCTTGTACTTTGAGTGTATCACAATTTGGTCTGTCGCATGTTGAATTGTTCAAAAACAGTCGATAGAATGGAACAAAGCAACGATTAATGTTTTTAGAATCGTTGCATTTAAAACCCAAAAATCACTTTATGAATGCAACCACACTTGTGCCCTTATGCAATGTAAAAATGAACGAATCCACTCCGTGTTCCCACCTAGCTCCAATCCGTACTTTACTTCTGTCTGTACGGCTTAGTAAAATGGCTGTATCTCGCGGAGCCTCGTGCTGGTTCGCTCCGTTCCTTTCCTCTATTCTCGCTCACTAATAGAACCCCCGGAATATATGTCTGTTTATGCATCCTTGAGGTTTATTATTACGTGTCCAATTATTTTCACATTGGAATCAGGAGACAAAACCGGATTCGGTCCGGAGAAAGGGGTGGGAATGAGTCGGGACAAGGATAAATGGTTATAAACAATTATTTATATTCAATGCTAGCGTTTGATTGTGACTGACTCGCCGAGAGAGGGGGGTATTATGGCCGCTCAGGTCGCCAGCGCCGCCACTCTCAACACCAGCCCGCCTTCCGAACTAAAGAAACCGGATCGAGACCCACATGAGGATTCTATACTGGGGGAAAAGCAGCAGGAAAACAAGCAGCCGGGATTAGAGCGCGGATCTCCGGTCCGGGGGGATCTGCATGACGGGGCCGATGTTGGAAatgcagggggaggaggggaaccTGAGATGAAGAACGGGAACGGGAACCCTTCCAGGACTAATAATAATCAGAATGATTCCATTGGATCCGAGGGGAATAACCATCCCGGGATGGTACACCACCATGGGTCTGGTTTTCCTCCACCTTCTTATGGATACAGTCAACACTACGGCCGGGCCCCTTTTCATCAACATGGCGGACAACAAAGCCCTGGCATGGCAGCTGCTGCAGGTCCAGCCGTGCCGTCGAGTAATATGATGGACCCATATCAACCCAATTCGCACGACCATGGCTTTTCTAACCACCAGTTTAACAATTACAATCCATTCCCGAACAGAACTCCCTATTCTGGCCAAGGATACGGCATGAACCCCTCACGTAATACCCAGGCTCCGGCAGCTGGGGgacagccagctaacgttaagcAGCAACCAGCAGGAGGACCCACAGTAATGGCTGCATCTTACAACAACCAGAGATATATTATGGGGAATCCACAGCCAACGTCTACCCCAACCCTCAACCAGCTTCTAACCTCTCCAAGCTCCACTCGTATATATCCAAATTACCCATCTAGTGAATATAGTAATCAGGAAGGCGCTAGTAAGGGACCAACAGACACGGGCAGTAGCGGTCAGTATGGAGGGGGGAATCCGGGTTGGCAACAAAGGACCCATCATCCGCCGCCTATGAGCCCTGGAAGTACAGGGCAACCCCTAGGTAGAAGCCAGCCCCCAGGTGCAATGGATCCGATAGCTAAGTTGAGAGGCCAGCCGTACGGAGGGGGCAGTCCATACTCCCAACAACCTGGACAGGGGCCACCCCCAGGAGCCCAGCAGGGTCACGCATACCCGGGCCAAGGCTACGGTCCCCTTGGCTCCCAGAGATACCCGGTGGTCATGCAGGGCCGCACCCCTGGGACTATGGGGGGCATGCAGTACGGGCAGCAGATGCCGTCTTATGGGCAGCAGGGACCAGGAGGCTATGGGCCTCAGGGCCAAGGGCCCTACTACGGCCAACAGGGCCAGGCTTTACACCCAGGCCAGCAGCAAGGGCCCTACCCCCAGGCACCTCTGGGACAGCAGGGTGGTCAGACACCCTACCCTCAGCAGTCCCACCCTCCCCAGACGTCAGCCTCACATGCCCAGGGTGGGCCGCCCTATCCGCAGCCCCACATGCCCCCCCAGTCCCAGGGCCCGCAGCCAGGTCCATCCCAAGGGCCCCCGCAGTCTCAGCCGCCCTACTCCCAGGGCCCAGCCCAGGCTCAGTCTGGTCAGCCTCCTTACCCCCAGCAGCAGGGGCCTCCCAGCCAGCCTCCACAGCAGGCCAGCTCCCAGGTCCCAGCAGGGTCACAGCCCCAGCTTAGCTATCCACCCACGCAGGGCCCACAGCAGCTCCccacacagcagcagcagcagcaaccccAGACACCCTCTCAACCCCCTCAGCAACCACCAGGTCACAGCCAGCATCCACAGGGCCAGCCTGCATCCTACTCCCAGAATCCTCCACAGCAACAGCAGTCACCTTACCAAcgcttccctcctccaccacagCAGGAGATATCCCAGGACTCGTTCAGTTCCCAGTCTAGCGCCCCTCCCTCCAACCAGCCCAAAAGTGTCTCAGAGGACGTCAGCATGCAAGGCCAGCCGTCCAGCCTACCGGATCTCTCAGGCTCCATCGATGACCTGCCCACGGGCACGGATGGCGCTCTGAGTCCTGGCGTGAGCACTTCAGGTGTGTCAAACAGCCAGGGTGAGCAGAGCAACCTGGCCCAGTCGCCCTTCTCGCCCCACACCTCTCCCCACCTGCCAGGCATCCGAGGGCCCTCACCGTCACCCGCCGGCTCCCCTGCCAGTGCCACCACCTCCCGCACGGGGCCCCTCTCACCCGCCACAATGCCAGGGACCCAGATGCCCCCTAGACCATCGAGTGTGCAGTCTGACGGGAGTCTGCACCCCGCCATGAGCCAGTCTCCCATGGCCCAGGAGAGAGGGTTCGTACAGAGAAACCCCCAGATGCCCCCATACGGTTCACCACAGTCTGCCTCTCCCCTGTCACCCCGACAGTCCTCTGGAGGCCAGATGCACCCTGGGATGGGACCTTATCAGCAGCAGAACAACTGCATGGGGGGCTATGGACCTCAGGGTGGGCAGTATGGCCCACAAGGTTACCCCCGGCAACCTGGATACAACAACATGCCCAATGCCAACTACCCTGGCCCTGGCATGGGCAACCCCATGAACCCTGGCCCTGGCATGGGCAACCCCATAAACTCCATGTCTGGGCAAGGGGGGCTGCCGTACGCAGGCATCCCCCCTGGTAGAATGCCTGCGGGCCAGATGGGAGTGCGTCCCTATGGCCCTAACATGGGGCCCAACATGCCACCCAATATGAGTAACATGCCACCTCAGGTGGGCTCAGGGATGTGCCCTCCCCCCGGCCTCAACCGGAAGGCCCAGGAGGCTGCAGCTGTAGTCATGCAACACGCTGCTACCAACTCCATACACAACAGGATGCCTGGCTACCCCAACATGTCCCCTGGCATGATGGGCTCTGGCACCCCCTATGGCCCTCCCATGAACAACATGCCTGGCATGATGAACACGCAGGGCGGCCCACCTTTCCCTATGGGGCCCAACATGGCCAATAACTCCAGTGGTTTGGTCCCCAGTCCAGAGTTTGGTATGGATGGGAAAATGAACCAGGGCCAGAAGATGAACAACAAAGTGGACGGAACACCGAAAGCAGAACCGACTAAATCCAAGAAGTCAAGCTCTTCCACGACGACCAACGAGAAGATCACGCGTCTGTATGAGCTGGGCCCCGAGCTGGAGAGGAAGATGTGGGTGGACCGCTACCTGGGCTTTATCGAGGAGAAAGCCATGGGCATGACCAATCTGCCTGCTGTTGGCCGCAAGCCCCTAGACCTCTTCAGACTCTACGTCTCGGTCAAGGAGATTGGAGGCTTCGCACAGGTGAACAAGAACAAGAAGTGGCGGGAGCTGTCCACCAACCTGAACGTTGGCACGTCGAGCAGCGCTGCCAGCTCCCTGAAGAAGCAGTACATCCAGTGTCTGTACGCCTTCGAGTGCAAGATCGAACGCGGGGAGGACCCCCCTCCTGAGATCATCACTGACAACAAGAAGGCCAACCAGGCCAAGGTCCAGCCACCCTCCCCAGCTGGGTCAGGTTCTCTCCAGGGCCCTCAGACCCCCCAGTCCACCAGCAGCTCCATGGCCGAGGGCAGCGACCTCAAGCCCCCCACACCCGCCTCCACCCCACACCCCACCCAGATGCCACCCGGGGCCAGGAGCAATGTGGCGCTGCAGGACCCATTTGCTGACAGTAGTGACCCTGCTTTCCCCAGAAGGAACTCCATGACCCCTAACTCTGGCTACCAGTCTGGCATGAGCACCCCAGAGATGCCAGGTCGCATGGGTCCAGGGCCCTACGAGGGTCCAGGGCCTAACAAAGACCCCTTTGGTGCCATGCGGAAAGTTGGGGAGCAGTTCTTGCCTGCCAGTCCTAACAGTGGGATGGCTGAACAGCAACAGTTTAACCGTGGGCCTCCTCCAGGTGCTATGGGGAACATGTCGATGGCTCAGAGACAACAGTACGGACCAGGACCTTACGGACAAGGCTACGAAAGGAGGCCAGAGCAGGGGATGGGCCCAGAGGGCAGCATGGGATCTGGTGCTCCGCAGCCAAACCTGATGCCTGTCAACTCCGACACGGGGATGTACTCGCCAAACcgctacccaccacagcagcagccACGGAATGATTCCTATGGTAATCAATATCCTGGCCATGGTACTCCCCCTGGTGGTTCCTATCCCAATCAACAGCCAGGAATGTACCCACAGCAACAACAGAACTACAAGCGTCCCGTGGAAGGGGGCTACCCACCAGCGAAGCGTCACGAGGGGGAGATGTACAGTGCCCCCTTCAGTGCAGGGCTgctgcagcagcagcaacaacaaccgcAGCAGCAGCCAGGGGTGGCCTCTGCACCCCCTGCTGGCCAGCCAGAGATGTACCAACCCCAGTACAGCAGCGGCTCCTTCACCGGCACTGACCGCCGCCTGCCTGGTCCCCAGGGCCAGTTCCCCTTCCCCTTCAACAGAGAGCGCATGCAGGCCGCCACGGGGCCCAACACCCAGCCCTCCATGCCCCCTCAGATTATGCAGCCAAGCACTGACGGACCCCCGGGTGGCGTGTGGCAGGGCCGCGGGGAGATTAACTATCCCGGCAACTACCCCAACCGGCAGGGTGGCCCCCCAGGGGGCCCAGCCCAGGGGCCTGGCCACCCCGGCATGAACCGCGGTTCGGAGGAAATGTCATCAGAGCAGCGCATGAACCACGAGGGCCAATGGGGGCCAGGTCAGATGGGCCCTCGGCAGCCCCCCTACGGCCCTGGAGGGACGGGCCCGCCCATGACCCGCACCCTACAGTCCAACTACCAATCCGCTCAGGCCATGCAGAACCACATTCCACAGGTGTCCAGTCCCTCCCCCATGCCCCGCGGGGGCCCCATGGAGAGCCGGACGTCGCCCAGTAAATCTCCCTACATGCACAGTGGCATCAAGATGCAAAAGGCAGGGCCCCCGGTTCCTGCCTCTCACATAGTGCCCCAGTCTGTGCAGTCCCCTCTGATCCGTAGAGACATGCCCTTTCCCCCAGGCTCAGTGGAGGCCACCCACCCCATCCTAAAACCACGCCGATGCCTCACAACGAAAGATATCGGGACCCCAGAGGCTTGGAGGGTGATGATGTCCCTAAAGTCTGGCCTGTTGGCTGAGAGCACGTGGGCCCTCGACACCATCAACATCCTCCTGTATGACGACAACAGCATCTCCACCTTCAACCTCAATTCGCTGCCTGGCCTGCTGGAGCTGGTGGTGGAGTACTTCCGGCGCTGCCTCATCGAGATCTTTGGGATCTTGCGCGAGTACGAGGTGGGCGATCCCGGCCAGAGGACTCTACTGGACCCTGACGCTCTGAAAAGAGACTGGAGCTGCATGGAAGATGAGGAACCAGGGGTGGAGGACATGAAGGtagaaggagaggatgaggaggatgatgatgaggaggaagaagaggtggtGGTGCAGCGTTCAAAACAGCCGGCCGGGACGACAATTGATGGACAGGCTCAGGTGAAGCAAGAGGATGAGCAAGAGTCGTGCTCAGAATGGGACACTCTGAAAGAGAAGGATGCTGAAGATAAGGAGAAGAGCTGCTCTACCTTTGAGCAGCCCAGCTCTTCATCGGACCCCCCTGGCCTTGGCCCGGCTACCCCCCAGGAGAGACCCAAACAGGCTAGCAAGTTCGACAAGCTCCCCCTGAAGATGGTACGGAAGAAGGACCCGTTTCCAGCAGGCAGGGCAACCCAGAGAGGAAAAGTGCAGGAGTTTGACAGTGGGCTGCTCCACTGGAGTGCCGGCGGCGGAGACAGCACGGAACACATCCAGACCCACtttgagaggagggaggaattcCTGGTCCCACGAGAACGAGTGCTGGTCGTCCCCACAGCCAAGAGGAAAAGGCCAGAACCAGAGAAGGTCGGGGACAAGGACAATGCTACCCCCACAGAGAAATACAaacagaagggggagagggatcaGAGGCCCTCCCAGCCATCATCCACAGAGAAGGCCTCAACAACAACCGACGGTAAGGAGGGGAAGTCCGAGCACTCGGACGCTGAGACAGAGGAAATGTCACAGTCCGAAGAGCCCCAGAGCCAGCAGGAGCACGACAAATCGAGCGGACCCACTCGTCAGCAAGTCCCCCAGCGTGTGGTGGAGGACGAGCCTCACAGCAAGGACGAGGGCCCACTGGTTACACTGGCCAACTGGCAGGATGCTCTGGCCCGCCGCTGTGTCTGCGTCTCCAACATCGTGCGCAGCCTCTCCTTCGTGCCTGGCAACGACCAGGAGATGTCCAAACACCCTGGCCTCATGCTGCTGCTGGGTCGCCTAGTGCTGCTGCACCACCGCCACCCTGAGAGGAAACAGGCCCCGCTCACCTACGAGAAGGAGGAAGAGTCTGATGACTGTCTTGGCCAGAGGGACGAATGGTGGTGGGACTGCCTGTCACTGTTGAGGGAGAACTGCCTGGTCACTCTGGCCAACATCTCTGGCCAGCTGGACCTCTCCATCTACCCCGAGAGCATCTGCCTTCCTCTGCTGGACGGCCTCCTCCACTGGGCTGTGTGCCCCTCGGCTGAGGCCCAGGACCCCTTCCCCACGTTGGGGCCACACAGCGCAATGTCCCCCCAGAGACTGGTCTTGGAGACCCTCAGCAAGCTGAGCATCCAAGACAACAATGTGGACCTGGTCCTGGCCACGCCGCCGTTGGGTCGTTTAGAGAAGCTGTATGGGACCTTGGTGCGGCTGGTTGGGGAGAGAAAGGTGGCCGTCTGCAGGGAGATGTCGGTGGTGTTGTTGGCCAACCTGGCCCAGGGAGACAGCATGGCAGCGCGCGCCATTGCCGTGCAGAAGGGAAGCGTGGGAAACCTCCTGGGCTTCTTGGAAGACAGCCTGGCGGCCACCCAGCTACAACAGAGCCAGAGCTCTCTACTGCACCTGCAGGGGATGCACTTTGAGCCCACCAGTAATGACATGATGCGGCGGGCGGCCCGGGCCCTGCACGCCTTGGCCAAGGTGGAGGAGAACCACTCAGAGTTCACACTCTACGAGTCACGCCTCCTCGACCTCTCCGTGTCACCTCTCATGAACTCTGTGGTGTCTCACGTCATCTGCGATGTACTCTTTCTGATTGGCCAGTCATGACAGCTGTAGGGAGCTTTGGCTCCACCTCCTCTTGGTTTCTTCCCTCCTCACCCCCTGGTTACAACATGGCTTGTATGTGTGTAGGGGGAAGGGAAAGTTCAAGTGACTGTTTTTAATTTATGCAAACCCTTCAGATTCCACTGTCTGAGCCCCCTTTCGCTGTTCTCACTCAAGGAGAAGGGATGTCACAAAGCTACACTGGTGGATTTACAAACCAGACACTCCACAAACTGTCACAACTTGTAACATTAATGCCAACTAGATGACAGAGTGGAGAACCTGGGTTTAGGAGTGTtccacatgtttgtttttttttttttttttggggggggggggaggggtgtgtgtattTTTAATAAAGATAAATAGCTGAAAAACAAACTGTAACCAAAGTTGCTGTCTCGTTTACAGGAAATTTGGGGATAATGTGTGCCCTTGTGTGCCCCTCGAGAGCACAGTGAGTGAGTCAGACTGGTTCATGTTTGGAGGTAGTGCAGACTGAGGAACAGCCTGATCTGATGGCATAGTTGCTGTAATTGGATGCTTACCAGTCAGCCTACCACTCAGTAGGCTGTTGAGACACCTTCGCTGGGGAGGCCTGTGCAGTAGATTGTAGGGCATTTTCTCTACCGTACTGCTCGAGTGTCAGGCATTCTGTAAAAAAGTTTCATACAGAAAAACGTTGCCAATGCAGCTCTACTAGAGTTAAAAGGTCATTTTAGTTTTGACGTTAAAAGCtaaaaaggccttccccaaagtACCGAGAACCTACTACAACACCCTTACCTCCTCTCTTTAGTCCTTGATTGTATGAATTTACCCTTGTAAAATAAATCACCTCTTAGGATTGGTTTTCAACTTCAGATGCAGCTTTGCTGTGGTGTATATATATGATATTGTACATTACACTtcctttctgtgtctgtctctgtgtcactATTCCCACTCATTTTGTTGATGAGGAATGGAAGGTGACCCATGAGTTTGGTTCCTGTCATCCAGTCCCTGCTGATAGACCTTCTCACTCCACGGCTCCATAGTACGGCAGACTCAGATCAAATCTGTTATCTCCTCCTGGTACAACAAAAAAAACTCTAGATGAAGAAACACACTTGACAATTCATTTCTCCAGGATTCTGCATATTTGTATTTCAAACTATGTAGCTAAAAACATGTAAATTCCTCCTTTTCCTTTTTTTGGCTCAATGAATATCATTCAGTATGAAATCTTTATACTATATGTTCCACGTGGTAAGAATAAATGTACATTAAATCTTCATAAAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287585 lncRNA downstream 4433 36659902 ~ 36660296 (-) True LOC110519931
TU287590 lncRNA downstream 5677 36658676 ~ 36659052 (-) True G252237
TU287483 lncRNA downstream 59075 36604263 ~ 36605654 (-) True G252136
TU287613 lncRNA downstream 72650 36591640 ~ 36592079 (-) True G252260
TU287608 lncRNA downstream 79257 36585238 ~ 36585472 (-) True G252255
TU287640 lncRNA upstream 59176 36745040 ~ 36782278 (-) True G252284
TU287659 lncRNA upstream 81549 36767413 ~ 36821166 (-) False G252299
TU287657 lncRNA upstream 82340 36768204 ~ 36769641 (-) True G252299
TU287737 lncRNA upstream 206669 36892533 ~ 36898281 (-) False LOC110504063
TU287741 lncRNA upstream 206669 36892533 ~ 36906191 (-) False LOC110504063
XM_021596806.2 mRNA downstream 484 36659224 ~ 36664245 (-) False LOC110519931
XM_021596807.2 mRNA downstream 490 36659224 ~ 36664239 (-) False LOC110519931
XM_036973988.1 mRNA downstream 490 36659224 ~ 36664239 (-) False LOC110519931
XM_021596804.2 mRNA downstream 21524 36636329 ~ 36643205 (-) True LOC110519930
XM_036973980.1 mRNA downstream 35599 36611815 ~ 36629130 (-) True zdhhc18a
XM_021596819.2 mRNA upstream 9171 36695035 ~ 36706064 (-) False LOC110519934
XM_036973997.1 mRNA upstream 9171 36695035 ~ 36706066 (-) False LOC110519934
XM_021596818.2 mRNA upstream 9171 36695035 ~ 36707144 (-) False LOC110519934
XM_021596817.2 mRNA upstream 9171 36695035 ~ 36707198 (-) False LOC110519934
XM_036973996.1 mRNA upstream 9171 36695035 ~ 36707198 (-) False LOC110519934
TU286962 other downstream 306758 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 520157 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 1768433 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1774775 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 2305278 34357275 ~ 34359451 (-) True G249485
TU287636 other upstream 45981 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 2713397 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 2958707 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 3132784 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3636642 40322506 ~ 40322898 (-) True G256616

Expression Profile