RNA id: XM_021596822.2


Basic Information

Item Value
RNA id XM_021596822.2
length 1356
RNA type mRNA
GC content 0.50
exon number 7
gene id gpatch3
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36731832 ~ 36754332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGATGGAGTATGTAAGGGGTGTGCTCCAACCTATTTCCTCATGAGTCACATTTGTACTGAACTGGTGGGCACTTTGCATACAGCTCGTTTCTCTGATAGTATAAACTTGTCTCCCAACAATGACTCACTATTACAAACATTAAGGGATGAGGATGAATTCCCCTACAAGACAAAGTCCGGGCACAGGCGCCACGTGGCACTAACAGAACGCTTCACAGAGGCGGACCTAAAGGGCTTACCAGAGCTGAACCCGCCTTCTCTTATGCCGGCTGGTAATGTGGGTACAACCGTAAAGGTATTCTTACAGCTTATTCAGTCATGCCGACTACCCCCACGCCTCATACGCAAGCTGGGCCTCGCCTTCCCCAAGACAAGCTGCAATCGGCGCTATGGTAATGTGCCCTTCCAGTACCATAACACCAGCTTAGCACCATCAACTGAGGAGAGTGTCTTCACAGCTGGTGGGCATGAAATATCAGGTCCTGGCAGTGTGGCCCCTCCCTCAGGAACCCAGGGGCCCACTGACCCCTCAGGGGACCCTGAAATACCAGAGGAAGACGAGGATGCCCAGTCAAATGCAGATGATGACGATGACCGCTGTGAGGAGTGGGAGCGCCATGAGGCCCTACATGAGGACGTGACGAGCCAGGAACGCAGCAAGGAGCGGCTCTACGAGGAAGAGATAGAGCTGAAGTGGGAGAAGGGAGGCTCGGGCCTGGTCTTCTACACTGATGCCCAGTACTGGCAAGAGGAAGAAGGAGATTTTGATGAGCAAACTGCAGATgattgggatgtggacatgagcGTTTACTATGACAAAGACGGGGGTGACATGGACTCCCGTGACTACGTCCGCATGCGGTATGAGAATAGGCTGAGGGAGGGGCTGGAGGACCGTTCTGGAGGACAAGATCAGCCAATCGGCAACTTTGAGAAGTTCACAAAGGGTGTTGGTCGCCGGGTGATGGAGAAGCAGGGCTGGAAGGAGGGAAAGGGCCTGGGTAACAGTCAGGCAGGGATTCCAGAAGCCTTGGAGAATGAAGGACAGCATCCTAAATGCAAGCGGGGCTTTGGGTACCATGGAGAGAAGCTGAGCACCTACTTTGTGAAAAAGGCCAAACCAGACTTGTTCATATCCACGGTGTATGATAAACCCAAAGACATAGACCAAGGAGACCCCTTATTGCGACGCAATCCCAAAACCAGCATGAAGTACAGAGGCTGGCAGCCAGGTGgcaacatttttccaaaaagatgACAACTCTGTATTTACATAATTTCTTATTACTAATACCTCTTGTTACCATTAGAATTCATAATTTGTTTATATTAAAGCATTTATCATACAAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287585 lncRNA downstream 71536 36659902 ~ 36660296 (-) True LOC110519931
TU287590 lncRNA downstream 72780 36658676 ~ 36659052 (-) True G252237
TU287483 lncRNA downstream 126178 36604263 ~ 36605654 (-) True G252136
TU287613 lncRNA downstream 139753 36591640 ~ 36592079 (-) True G252260
TU287608 lncRNA downstream 146360 36585238 ~ 36585472 (-) True G252255
TU287659 lncRNA upstream 13367 36767413 ~ 36821166 (-) False G252299
TU287657 lncRNA upstream 14158 36768204 ~ 36769641 (-) True G252299
TU287737 lncRNA upstream 138487 36892533 ~ 36898281 (-) False LOC110504063
TU287741 lncRNA upstream 138487 36892533 ~ 36906191 (-) False LOC110504063
TU287743 lncRNA upstream 138487 36892533 ~ 36898281 (-) False LOC110504063
XM_036973995.1 mRNA downstream 20923 36695035 ~ 36710909 (-) True LOC110519934
XM_036973993.1 mRNA downstream 20928 36695035 ~ 36710904 (-) False LOC110519934
XM_021596817.2 mRNA downstream 24634 36695035 ~ 36707198 (-) False LOC110519934
XM_036973996.1 mRNA downstream 24634 36695035 ~ 36707198 (-) False LOC110519934
XM_021596818.2 mRNA downstream 24688 36695035 ~ 36707144 (-) False LOC110519934
LOC110504063 mRNA upstream 128268 36882314 ~ 36892536 (-) False LOC110504063
XM_021596824.2 mRNA upstream 656222 37410268 ~ 37415261 (-) False LOC110519937
XM_021596826.2 mRNA upstream 689589 37443635 ~ 37641452 (-) True clybl
XR_005039852.1 mRNA upstream 934729 37688775 ~ 37692005 (-) False LOC118944514
XM_036974000.1 mRNA upstream 1060663 37814709 ~ 38062756 (-) False LOC110519943
TU286962 other downstream 373861 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 587260 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 1835536 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1841878 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 2372381 34357275 ~ 34359451 (-) True G249485
TU291417 other upstream 2645215 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 2890525 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 3064602 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3568460 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 3581164 40335210 ~ 40335440 (-) True G256632

Expression Profile