RNA id: TU288447


Basic Information

Item Value
RNA id TU288447
length 1477
lncRNA type sense_over
GC content 0.39
exon number 4
gene id LOC110519937
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37410268 ~ 37416025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTCCCAAAGTTTTCAGACGTCCTACTCCCGGTCCCATTATTGACCGCTTTTTTAGAGTATTTGGGAGCCGAGAGGGACAAGAGAAAATATGATGTGTCTTGGAGCAGGAGGACTTGTGGGACTTGAATTAAATggaagtGAGAGAAAACGTTCAAACATAGGCTCGTGCGGTTGATTGCAGCTAAAATAAACAAAAGTCATATTTTGCAGCTAAGGCAAGACTGACAAACTGTGCAAGATATCTAAGCAAAATGGACAAACCACCGACCCAACTCTCTATGAAAACAAGGAGAGAAACCATTCCAGTGTGAGTTTGAAGGCTGTGACAGGCGGTTTGCCAACAGCAGTGACCGAAAGAAGCACATGCATGTCCACACGTCTGACAAACCATATCTTTGCAAAATGTGTGACAAGTCCTACACACATCCCAGCTCTCTGCGAAAACACATGAAGGTCCACGAAGCGGCCCCCCCTCCAGCGTCCGACTCCTCGCCTGCAGCCAGTTCTGGTTACGAGTCATCCACACCGCCCGGCTTAATCTCCCCCACCACCGAGACCCAAAGCAACAACAATCTTTCACCCGCGTCCGCAGTCCACAACAACAACGGTCACAGCAGCCTATCGTCTAATTTCAGTGAATGGTATGTTTAGGACTGAACCGAACAGCGAATAACAGAACCATTGCTCAGAACCAGCGCAGGAGATTCGGACACTCATGCACGGAGGAGAGCATGAATACTATGAACGCTTCAAAAGCATATGAATAGATTTAAAACCAACAGGGAAGAGAACTCACTtaccaacagaagaaaatatgtaATATGTTCAAGGAGCATTCAATATATTTGTAAATAATTATTACACTCCCTCTTTCCCATTGGTTGTGGTAGATTTTTGTCGTTCTGTGGTGTATAGATAGATGTTCCTTCAATGGTAGCTATTTCTCTAACTGGACTTTTAGTGCACATTTTACGATTCAAGTTGTATTATGATGTTAAATATTGTGATCCTAAGGCAAATTGATTGTAACTATACTAAACATCTATAAACTGGAAAGAGTGCCAAAGTTAACACTTAACTCAAACAGTCCACCATATTTTGCTTGTGAATGTTGGCTTATATTTTAGTTTGCTGGGCTTAACTTGTGATGTTCTGTGCTTTGCAAGTTTTTAATTGTGAAATGTCTGGAAGATTAGACGTTGTACCGTTGGATTTTCTGTAATTTACATCCTTCCTTTTGTAAATATCTACTGCCATATTTATCCGTTTGTAATTAAATTATGGTATTTACTACAAATTAAACAATATTTATAAAGAATGTTTCTTTACTATAAATATGTACAATTGTGAGCTAAACAGGGGCAGTTGTTTTGTTATGTGCTTTTGTTCAAAGTTAAAGAGGTGTTTTCTTCATTATTGTGATAAGAATTTTACTGCATACAAATATAATAAAAGTGTTGCAAGTGTTAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU288443 lncRNA downstream 95 37409948 ~ 37410175 (-) True G253038
TU288434 lncRNA downstream 14783 37395208 ~ 37395487 (-) True G253029
TU288432 lncRNA downstream 15841 37394211 ~ 37394429 (-) True G253027
TU288274 lncRNA downstream 20756 37389225 ~ 37389514 (-) True G252874
TU288255 lncRNA downstream 42797 37367272 ~ 37367473 (-) True G252856
TU288492 lncRNA upstream 67154 37483179 ~ 37484517 (-) True G253076
TU288558 lncRNA upstream 162784 37578809 ~ 37580288 (-) True G253139
TU288603 lncRNA upstream 229934 37645959 ~ 37646248 (-) True G253183
TU288685 lncRNA upstream 272765 37688790 ~ 37692204 (-) True LOC118944514
TU288721 lncRNA upstream 310611 37726636 ~ 37726856 (-) True G253298
LOC110504063 mRNA downstream 517734 36882314 ~ 36892536 (-) False LOC110504063
XM_036973998.1 mRNA downstream 655938 36731832 ~ 36754332 (-) False gpatch3
XM_021596822.2 mRNA downstream 656224 36731832 ~ 36754046 (-) False gpatch3
XM_021596820.2 mRNA downstream 662327 36731832 ~ 36747943 (-) False gpatch3
XM_036973995.1 mRNA downstream 699361 36695035 ~ 36710909 (-) True LOC110519934
XM_021596826.2 mRNA upstream 27610 37443635 ~ 37641452 (-) True clybl
XR_005039852.1 mRNA upstream 272750 37688775 ~ 37692005 (-) False LOC118944514
XM_036974000.1 mRNA upstream 398684 37814709 ~ 38062756 (-) False LOC110519943
XM_036974001.1 mRNA upstream 398684 37814709 ~ 38062756 (-) False LOC110519943
XM_036974002.1 mRNA upstream 398684 37814709 ~ 38062756 (-) False LOC110519943
TU287636 other downstream 676830 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 1052299 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 1265698 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 2513974 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 2520316 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 1983236 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 2228546 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 2402623 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 2906481 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 2919185 40335210 ~ 40335440 (-) True G256632

Expression Profile