RNA id: XR_002472908.2


Basic Information

Item Value
RNA id XR_002472908.2
length 2293
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110519939
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37428004 ~ 37489579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taacatgaagtcctatgagtgtcatctgatgatcatcaaaggttagtgattcattttagctatatttctgctttttgtgactcctctctttggctgtaaaaatggctgtgtttttatcTGACTTGGAATGTCTGGTAGAGGCAGAGTATGATAAGGAGATTAATAGaattctggcgtttgattgcaaatgcatagggagtcgaaaagagaacacagaaggttGTTGTATAAAAAACCTGTCTCTGgaatacatcttcaaactaagggcatccgtgacagagagggagaaagagagggagaaagatctgATGAATCTTATGGCATTGCAaacggtcagtgtgaaccagagtgaccAAACAAGCTGTATAAACAAAATGGAAACGACACAGGATgtcttatttaatgaaaggggttgcagtctgccctgaagctttcatccatgtatatgggtaagaatctagctacagtttcagatattatacgtttctaattttgtcagaaagttgttttcattgcaagttaaggcttgctgttagctagctagctgacattgGATGGCTTGCTAGCCATCATTACGTGTATGAACTGTGTAGTGATGttatctcagaatgccattttgcattgctagttataggataatgttagctagctaactagctaacattgaacctgtttGGTTTAGCGAGCTATGACAAttggtttgtattgctagtaatctatggattgggattatggttcattgtttagctagctagctacatgtctaaacaaaatacctTGAGTTAAAGCttgcagttagctagctagctgacgacccatcaagttagccaggtgtgtctgacaGTGATTACGACCATCTATTTTATTATAATGcaaaaatatttgtatctggaatttgtctttcagcatcagtagaacacgcctgactctcctccaccagtcatacaaggagaatggtctaatgtctcccatcaaaaagagagctggcccaagcaagcaCGTTACACCTGAAGCATGAGGACTTGCAACGACAACTACGCAGAGGATAATACAATAGTATTACCAGGACGCCACCCAGGACACAAACACTTTGGTGGAAAGCTCCTGCCATCCCATGTGACAAAAGCAGCAGTGTGGCGTCTCTACAAGGAATCAATGACAACACTTGGAATCTGTGGAGATTCCTGAAGCACTAAGCCCAGGACAGACCTGTGTTGCCAATGCCAGAGGAACAACTAAGGTCTTCAGATTTGCAAATCTGTCAGAAGCTGTTAAGTCAGCCAAGCTGAAAAAGCACAAGCTCCCCTACAgtctggaccttcacttcctgatcacaggccacaccaagtttGCCCCTGACTGGAGATTCGGCCTCATAAAGCAGAGCTTCAGAAAGACCATAGtgaacactttgtctgagattgctggtgttgtgaaggacagcactgtgacagggctcaacatcccacagctggttggactggaggatggtacggtgctggtggaaagctatggctggcaacacCAGACTCCGTACTTCAGGGCActgccacagatcaagcagtaccagGACTTCAGGCGGATAACATTTTCATTGCAATCTTCaatgctctggagcctggtgttgttaTCGCCATGGAGCGTTCGGACTGTCGGGACCAGGCTTCAGCTGCTGCTCAAtgctgacatccttcctcccatagatgaTCTGCCTGTACAAGAaacacctggactggacacagctagagAAACTTATCtttttgagaagatcagggagttttgcgATGAAGAGGCTgtggacatcacatgccctgcaccaaagtcaagggcaggacagaaacaggctctctgaatatagattcccttgttcatgcATGGTTCGGACGAaccagtcatcagcactatctgcagtgcctctattcacATGACTCTACGTTGTTGCTACTATTTTATTTATCCCGCTTCTCAGCCACTTTACCTCTGATGTGTGCATTTAACTACCTCGTCTATCACTGATATCattattgatattgttcttgtacatactgtatattattttatatatattgacaCTATATgtttctgatattgctactatgcaagtaaccatttctctgtactgtttacaccttctgtgACCCATCCACTTGGCAATATGTGGCTGGGGTTatagctgtcacgccctggtcttagtattttctttattattttgatcaggccagggtgtgacatgggttattttatgtggtgtgttttgtctaggggtttgttgtaggttatgggatagtggtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU288298 lncRNA upstream 88663 37398220 ~ 37398419 (+) True G252894
TU288295 lncRNA upstream 91361 37395515 ~ 37395721 (+) True G252891
TU288266 lncRNA upstream 102277 37384600 ~ 37384805 (+) True G252866
TU288226 lncRNA upstream 113343 37373322 ~ 37373739 (+) True G252828
TU288223 lncRNA upstream 119185 37367555 ~ 37367897 (+) True G252825
TU288427 lncRNA downstream 148743 37638313 ~ 37638677 (+) True G253022
TU288728 lncRNA downstream 239435 37729005 ~ 37752270 (+) True G253305
TU288736 lncRNA downstream 254395 37743965 ~ 37744432 (+) True G253313
TU288725 lncRNA downstream 259238 37748808 ~ 37756709 (+) True LOC110519942
TU288739 lncRNA downstream 271216 37760786 ~ 37761394 (+) True G253316
XM_021596823.2 mRNA upstream 62746 37419106 ~ 37424336 (+) True LOC110519936
XR_005044177.1 mRNA upstream 827529 36657467 ~ 36659553 (+) True LOC110519932
XM_021596759.2 mRNA upstream 1099866 36381470 ~ 36387216 (+) False rcc1
XM_021596827.2 mRNA downstream 199218 37688788 ~ 37691898 (+) True si:ch211-184m13.4
XM_021596828.2 mRNA downstream 259125 37748695 ~ 37755452 (+) False LOC110519942
XM_021596833.2 mRNA downstream 744773 38234343 ~ 38250022 (+) False LOC110519944
XM_021596834.2 mRNA downstream 744773 38234343 ~ 38250022 (+) False LOC110519944
XM_021596835.2 mRNA downstream 744773 38234343 ~ 38250022 (+) True LOC110519944
TU287145 other upstream 859540 36623610 ~ 36627542 (+) True G251845
TU287065 other upstream 961909 36511574 ~ 36525173 (+) True G251773
TU285526 other upstream 2265710 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 2313619 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 3066470 34419890 ~ 34420612 (+) True G249323
TU288722 other downstream 237378 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 602752 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 951596 38441166 ~ 38441734 (+) True G254204
TU289899 other downstream 1110917 38600487 ~ 38600866 (+) True G254445
TU290310 other downstream 1353940 38843510 ~ 38844556 (+) True G254816

Expression Profile