RNA id: XM_021596827.2


Basic Information

Item Value
RNA id XM_021596827.2
length 2563
RNA type mRNA
GC content 0.42
exon number 3
gene id si:ch211-184m13.4
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37688788 ~ 37691898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTATTCATCAGGGTTCATCCTTTTTTTCTCAAACAGATTTTTTTCTCAACAGGAGAAATGTCTACCAACATCTCTGTGGTGGATTTAAACACCTCTGACACCAACCAGATGTGTGATGTCTTTGTCTACCAGAGAGCTGCCTTGATCATCTTCCCAATCTTCTACTCTCTGGTGTTCCTCATCAGTGTCTGTGGCAACTGCCTTGTCCTGTATGTGACCTGTCAGAAGAAGCAGAAGTTCAACTCCACGTCTCTTTACCTGGTCAACCTGGCTGTGTCTGATGCATTGTTCACATTGGCACTGCCAGGGAGAGTCACTTACTACATCAGACAGTTTGACTGGCCCTTTGGGGATTTGCTCTGCAGGCTGGCTACTATGTTGTTCTTTTCAAACACATACtcagGAATTGCCTTCATGACATGTATCAGTCTAGACCGGTACCTGGCCATGGTCCACCCCCACCGGCTACAGTACCTGCGGAGTGTCAAAGTGGTGCGAGGGGTCTGCTGCCTCGTCTGGCTACTGGTGTGTCTGGAAACTGCCCCCCTGCTCTTCCGTACCATGCTCCATGACCACAGAGGCCGACGAACCTGCATGGAGTACTTCACCTTTGAGGGTACTCGCTCCACCCCTTATCTTCTCTTCCTGGCCTGTACGGTTTCCTTCTGTCTCCCCCTACTGGTCATCATTGTGTGTTACACCCGGATCAATCTCAAACTGAGTCGCACAGCCAAACAGAACCCACTGACTGGCCGCTTGGGTCGTAGCCGCAGAGCCAACAatatcatcctcctcatcctcctcacctTCGTCCTGTGCTTCAGTCCCTACCACCTCAACATCATGCAGTTCATGCTGAGGAAGATGCTGGGCCAGCCCAAGTGTGACGAGATGCGGGCATTCAAGGCTTCCCTACAGGTGACTGTCTCCATGATGAACCTTAACTGTTGTCTGGACCCTGTCATCTACTTCTTTGCCATTAAGACGTACAAGCAGAGGGTGATGAGTCTGTTCAAGGGCTACCTTTCTACCCCTGCTCCTTTCTCCAAAACCGCCACcgacaacagcagcagcaacacctaaacatcaacaccagtagGAAGTTATAGTAGTTCTTTATTAAACCAGAAAGAAGTTGAGGAAGCTATTGAAGGGGATTGCACCTAGTTGATTTCTGCATCTAGGGTTTGATTTGAGGTGTTACATTTGTGTAACAAACTGAGAATTTTGTTTTGCGATAGTGAGCAAAGAATTATCAGGCTGTAACCATTGTTTGGGTGCTAGACCGTCTACAGctttgttcacactgcaggccttaataCTCAAATCCATTTAGTTTTTCAAATCCATTTTGGAATACTGACTGTacaaacagcaagttacaagtgaccaaatcgaatttgtgtgtgttcagactgTAGTCAATTGCTTACATTGTTACTCAAGTTGTCATTGTAATTGCGGGTGTGTGTCCAGTTGTTGTGTACTGGTATTATGTTAAGGTGACtgacaacaatgcctgccatggaagtctcccagttgctttgaatgtttaAAATCATAGCGTAAGAACACttttaaagcctcaaaggatAAGGTGATCCAACTTTCAGAACTAGTCATTTTTGGCTAGCCAAAGCAGTCAACAAGCTtgctaggtagctgtttagcttgCTAGCACAAATCACTAatgtgtttgtaaacaattaacaagctagATAGCTACTACATGTTGTTGTCAAACTGTCAACTGAGAAGCCTGCAAACCACACGATACGCCAAATAACAGTAAAAAAATACTAGAAGGCAAATAAATCAGAGTTGACTGTTCAGACACAAGTCACATCATTTACAAATATGGTCCAAATTGGGTCTTGAAATATCCAATTCGATGTGCTTTTTGTCTGTTCAGACTGCAGAAAAAAGAATATATTAAAATCAGATatgcattttttttgtcacttcaaaccagtgtgaacaaggcttaatAAGATGCAATTAATATAGAGCAGCCTGATTTTGAGCTCAGCTTGAACTATCAAAACTGCAAACTGAGCCTAAAGGCAAAGGTCACTTATCGCTTATATTTAAGGCAGGGGAGCATATTGACATGGGGTCCATATCAAATTTACCAATTAATTCATTTCAAATCACTCCATATGTGTTTCTTTATTTACGTAATGCCTATACAGTTGGTGTAAATGGTTTACACTGTACATATCCCATTCTGTGTTTTATATTGCTATGCCCTGTCTAAGCTGGGAGGGGGGCTACTTACTAAGCAATATGGAATTGCTTTAAGCAGGTCATaccatggaacattttgttactTGATTTCAAATGagatttttttaatataaaaatgATTTGATGAAGAAGAAAGCATTAGcctttactgctattagcccatacaaacacattgattcactacatggaacaacagatagtccccccacCAAAGAAAtataaaggaagtttgttcttaagtgtctgtcctataccTTTAACAAAACCTTTTAAAAACAACCCATATGtatgtgttcgtgagagtctaaCCTTTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU288427 lncRNA upstream 50111 37638313 ~ 37638677 (+) True G253022
TU288289 lncRNA upstream 199209 37428004 ~ 37489579 (+) True LOC110519939
TU288298 lncRNA upstream 290369 37398220 ~ 37398419 (+) True G252894
TU288295 lncRNA upstream 293067 37395515 ~ 37395721 (+) True G252891
TU288266 lncRNA upstream 303983 37384600 ~ 37384805 (+) True G252866
TU288728 lncRNA downstream 37107 37729005 ~ 37752270 (+) True G253305
TU288736 lncRNA downstream 52067 37743965 ~ 37744432 (+) True G253313
TU288725 lncRNA downstream 56910 37748808 ~ 37756709 (+) True LOC110519942
TU288739 lncRNA downstream 68888 37760786 ~ 37761394 (+) True G253316
TU288816 lncRNA downstream 110710 37802608 ~ 37802882 (+) True G253392
XR_002472908.2 mRNA upstream 199218 37487082 ~ 37489570 (+) False LOC110519939
XR_002472909.2 mRNA upstream 199226 37485583 ~ 37489562 (+) False LOC110519939
XM_021596823.2 mRNA upstream 264452 37419106 ~ 37424336 (+) True LOC110519936
XR_005044177.1 mRNA upstream 1029235 36657467 ~ 36659553 (+) True LOC110519932
XM_021596759.2 mRNA upstream 1301572 36381470 ~ 36387216 (+) False rcc1
XM_021596828.2 mRNA downstream 56797 37748695 ~ 37755452 (+) False LOC110519942
XM_021596833.2 mRNA downstream 542445 38234343 ~ 38250022 (+) False LOC110519944
XM_021596834.2 mRNA downstream 542445 38234343 ~ 38250022 (+) False LOC110519944
XM_021596835.2 mRNA downstream 542445 38234343 ~ 38250022 (+) True LOC110519944
XM_036974005.1 mRNA downstream 944048 38635946 ~ 38760490 (+) False LOC110519946
TU287145 other upstream 1061246 36623610 ~ 36627542 (+) True G251845
TU287065 other upstream 1163615 36511574 ~ 36525173 (+) True G251773
TU285526 other upstream 2467416 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 2515325 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 3268176 34419890 ~ 34420612 (+) True G249323
TU288722 other downstream 35050 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 400424 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 749268 38441166 ~ 38441734 (+) True G254204
TU289899 other downstream 908589 38600487 ~ 38600866 (+) True G254445
TU290310 other downstream 1151612 38843510 ~ 38844556 (+) True G254816

Expression Profile