RNA id: XM_021596835.2


Basic Information

Item Value
RNA id XM_021596835.2
length 1637
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110519944
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38234343 ~ 38250022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAACAGGAGGGAGTGGGCAGCAGACAACTGCATGGTTTCAGCTATTTGTTCAAATCAGAATTAGTCCTATGCTAAATTAcaccccccccctacacacatttTCGCGGACTACTGGACATAACATTATCAGCGTTTATGACCACTGATTTATTAACCAATGATGTTCGGGTCGCTCTGGGGCAGGACGCACCTGAACACTGAAAACCACTAGCGGACAGGCTGAGAGAAGGGCGAGGAAAATATAATGGTCATGGACAAGTCCTCAACAACATGAAGAATACAATCGGTGAAAGCGCTTAATTTCACGACTACAATCTGGGTAATTCCAAGATGGACAAATATCTGTCACCTCCTCAGAATATCCCAGACATCAGACAGCCATCTTTAACGGAGGACCTTGGTTCCCCATACAGCATCAACATGAGTCCCCTCCTACCTGACGTTACCTACCTGTGCCCCAACCTGTGTCGGCCTATGAGACCCATCAAGACAgagcctctctcccactccctcatcCATCCCAGTTGCCAGTGCAACCCTGGTCCAACAACCCTTCCAGAACACCCTGGGCTTTATGGCGCTTCAACAGACACAGGAAGTAGTCTGTTCATTAAACAGGAAATTCCCTCCCTGGACTTCCCAGACATTCCGTTGTTCCAgctgttgaactctgagctggaGCAGCTGGTGCCCGATCACCCGGTGAACACCAACCTCCATAGTAGGGTCCCTATGTCCTCCTTGTCGGTCCCTTTCGGCAACGTCCACATACCATCCCCCCAGATTGTTGTGAAATCTATGGGAAGCCCACAACATTTTGGCAATCGTCTGACAACCCAGTTTGCAAGCCATTCGCAGCAGCGACCAGACTATCTTCCTCCGTCCCCGCCTAACTCTGAGCCAGGGAGcccagacagagggaaagagctGATCCAGAATCGTTCTCTGCCTTCATCTTATGCAGCCAGTATTGCTTCGAAACTAAGACCTGTTCTTAGGCAAGTCCCAAGCTCTGGTCTAGGACCAGTTCTGAGCAAATGTCTTAGATTAGTTCAGAGTCCAGGTCTTGGACAAAGCCAAAGTTCTAGTCTTGGAACAGGCCAGAACCCTGGTGTTGGGCCAGTCTCCCCAAAGTTGGCTCAATCGGTTCCAGAGAGGTTTAACCGCAGGAATAACACtgacctggagaggaggaggatacatCACTGTGACATTCCAGGATGTAAGAAAGTCTACACCAAGTCCTCCCATTTAAAGGCCCATTTGCGGACACATACGGGTAAATGGAGAGAAGCCGTACCAATGCTCCTGGGAGGAATGCGAGTGGCGCTTTGCTCGTTCTGACGAGCTGACACGCCACTTTAGGAAACACACAGGGGCCAAGCCATTCCAGTGTGTTGTGTGTAACCGCTGTTTCTCCCGGTCTGACCACCTGGCTCTACACATGAAGAGGCACCGGAGCTAGAGAagcccacatacagtatatccttTTTTTTATTAGATCAAAGTCAAATGAAACTTTatgttaaatatacttaagtaaatctcaaactttcacaATACTATTGTGCAGACAATTGTTTCACAGGATTAGGCTCTCTGTCCTTACTGAGAAATAAATGTGGTGCTGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289475 lncRNA upstream 1295 38232827 ~ 38233048 (+) True G254039
TU289455 lncRNA upstream 19754 38214305 ~ 38214589 (+) True G254019
TU289447 lncRNA upstream 26342 38207788 ~ 38208001 (+) True G254011
TU289439 lncRNA upstream 32385 38201750 ~ 38201958 (+) True G254003
TU289436 lncRNA upstream 34486 38199531 ~ 38199857 (+) True G254000
TU289501 lncRNA downstream 13796 38263818 ~ 38269789 (+) True G254062
TU289566 lncRNA downstream 88582 38338604 ~ 38338854 (+) True G254124
TU289567 lncRNA downstream 90013 38340035 ~ 38340248 (+) True G254125
TU289569 lncRNA downstream 91337 38341359 ~ 38343849 (+) True G254127
TU289574 lncRNA downstream 96147 38346169 ~ 38346397 (+) True G254131
XM_021596828.2 mRNA upstream 478891 37748695 ~ 37755452 (+) False LOC110519942
XM_021596827.2 mRNA upstream 542445 37688788 ~ 37691898 (+) True si:ch211-184m13.4
XR_002472908.2 mRNA upstream 744773 37487082 ~ 37489570 (+) False LOC110519939
XR_002472909.2 mRNA upstream 744781 37485583 ~ 37489562 (+) False LOC110519939
XM_021596823.2 mRNA upstream 810007 37419106 ~ 37424336 (+) True LOC110519936
XM_036974005.1 mRNA downstream 385924 38635946 ~ 38760490 (+) False LOC110519946
XM_036974016.1 mRNA downstream 396274 38646296 ~ 38760490 (+) False LOC110519946
XM_036974006.1 mRNA downstream 396275 38646297 ~ 38760490 (+) False LOC110519946
XM_036974017.1 mRNA downstream 396275 38646297 ~ 38760490 (+) False LOC110519946
XM_036974007.1 mRNA downstream 396276 38646298 ~ 38760490 (+) False LOC110519946
TU289268 other upstream 141609 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 507005 37726948 ~ 37727338 (+) True G253299
TU287145 other upstream 1606801 36623610 ~ 36627542 (+) True G251845
TU287065 other upstream 1709170 36511574 ~ 36525173 (+) True G251773
TU285526 other upstream 3012971 35219832 ~ 35221372 (+) True LOC110519579
TU289648 other downstream 191144 38441166 ~ 38441734 (+) True G254204
TU289899 other downstream 350465 38600487 ~ 38600866 (+) True G254445
TU290310 other downstream 593488 38843510 ~ 38844556 (+) True G254816
TU290915 other downstream 1409037 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 2190047 40440069 ~ 40452180 (+) False LOC110519969

Expression Profile