RNA id: XM_021596836.2


Basic Information

Item Value
RNA id XM_021596836.2
length 7190
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC110519945
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38263798 ~ 38401288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCCTGAGAACTGTGAGAGCTCAGCAGCTGAGCGACAGAAGGGGAGGGAGCtgtgcacacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggggagcgagagatcGGACTGGAGAAGAGAACTGTTTTCTACGGCTCTGCAGCTTCTGACAAGACGACCCGAGAACAGGATGTTAATGCTTGATGGAATGCCTGCAGTCCGAGTCAAAGCCGAGCCCCTGGAATCGGAACAAGGGTCCCCCAAAGTACACCGATACCCCACGATGGACGCGGTCCCCCTCCTCCTGAGCAAAGTCAAATCTGAACCTCCTGAGGACCTGCTCTCCCATGACCCCCATTTCCAGACGCAGACCGAGCCTGTCGACCTGTCAATCAACAAACCACGCCCCTCCCCCCCATCAATCACCTCCACCGCTTCTCCTGTCACTTCCGCTTTCTCTCCGTCCTCCATTTCTTctttatcatcatcatcctcctctccgTCTGTCATCACATCTGCCTCATCTGTGCTCACACCCGGGCCCCTGGTGGCCCCTGGAGCCGGTGTCcagggtcatcatcatcatcagcagcagTTTTTGCACATCCTGCACCCTGTGCCTCCACCACCCTCCAGCCCCTTGAACCTGGGAGGGGTACAGGGCataggaggaggagtagggggaAAGATGGAGGCCCACCACCTGCATCGTATCCCTGTAGTGGTACAGTCATTGCCCCTCATGTACACCACAGCCGTGCGCTCGCCCTCCAGCCTCCACAACAATGCCATCATGCTACCTCTGCTGGACAATCATAAGAGCCACCATAGCAAAGCATACACAGACCACAACAGCTTGTCGCCGCGGCACATCAAGAGTGACAGTGACGATGATGACCTGCCCAATGTCACCCTAGACAGTGTCATCGAGACCGGATCTACCGCTCTGTCTATAGCACGCGCCGTACAGGATTCCATGTCACCATTCAGTATTGAGAGCATACGGCGCCCTCAGAGGTCAGAGTCGCCAGACTCCAAGAAGAGACGCATCCACAGGTGTGACTTTGAGGGCTGCAATAAGGTCTACACCAAGAGCTCCCATCTAAAAGCACACCGGAGGACGCacacagGTGAGAAGCCATACAAATGCACCTGGGATGGCTGCACGTGGAAGTTCGCCCGCTCTGACGAGCTGACTCGCCACTACCGGAAACACACAGGCATCAAGCCCTTCAAGTGTGCAGACTGTGACCGCAGCTTCTCCCGTTCGGACCACCTGGCCCTGCACCGACGGAGACACATGCTGGTGTGAGACAGTTTCAGGGTGACGATGTCATCAGATGAAGCAgaaacacacatttacacacacacacacacacacatatcgcCGCAGGGGGGAGCGGGGTCTCTCCCTCAATGTGGTTCAGCTggactggacacacactgttgtcTTTCCGTGAGGCAGTGGGAAGAGCGGAGCGAAAAGCACAgaatggtgtctgtctgtccacagagcaaaacaaaaacagggtCGGTTCTGGATCCTCACTGACTGAGGAGGGTTGGAACCGGAGAAGGCTCTTTAGTGGTCATTTTGGAGTTTTTACGACAATCTGTCTTTTTTCCTAGCACTGTTCTTAAATGGTTTCACTTCTGAGTTTTTTTGGAGGGATGTTCTTCGTTCATTTGGAAGGAATTTGGTGTCTTTGTTTTGGTTATATTGTTCAAAATGGCTGCTTTTCTAGCGTCTATAATGTGAAAGAACTCTATGGATTGGatggctggatgactggatggAAGGGCTGTATGCATGTGTTTTGAAGCATAGGGCCTTGGATTGGACAATGGAATTAAAAGACACAGATTCCAATTTGCCTATGGAAAGTATTGTTGCACAGTTCCCGCCGTATAGTAGCTTCCTGCATCTCTGTGTTTCAGGACAACCCGTCACCAGAGGGTGCCATCCACACATAGGTTGTACCTATAAAAACTGGTTTGAGTGTTCTAGAATCAGTATTGAAGAACACGTTCTAGTACCAGTGTTCTAGATTAAGAAGCATCCGGAGCATCTCAATGTACCAGTGATATAGATGCAGAGTTGTTTTtgctatttgttttgtttttcattcAATGCATCTTGTTAACACACGAGATCGACCCAACCACATTGAGGCTCATCACCTTGAGCCTCTTCTGaactttttctttaaaaaacttTATTGGTGCATTTTGTGCAGTGATTAGCAATCAGTAAAGTGCAATCTCATTGGGTAAATATAGTTTTAATATGGAGACTTTTATTGTTTTCAGTTTATTGTATCTTGCTGTGTATGCCTGCTTTTGATACATTTCACAAAGAAACATCAATCCACACCCCAATGTACAATGAAAAATCTAATGAACATAACCGGTATGTGAAAACAACTTTGAAGCACCTTACAGATTCACACATATGATGATTCCATAATATTCAAGGATTTTGTTTCATATCCCTGGTATTTTCAGTGAAAGGGATTGGCATTGTGATCATCTGTGTGTTAGTAGTCTATAGGTAAAGCATATTTGCTTCAGTTCAGAGGGCTTACTCGGTTACTCTAGTTCAATTGGAAAGCAATACATTCAGAACAGGGAAATGTTGTTCTTGTATCCTTGTTCTGGTTGCTGATACCCAAAATGACCCTAAATTCCTCTGTTACAGATATATTTCTACCAGTGCCACTTCATACTCTATAGTACAAATTTCTATATTTCTACTGGGTTTGTAACTACAGCACAAAGATTCTAGGCAAGCTCACtgtaaacagtttggaaaatgtCACATTAAGGATGGGCGGTTGAGGAggaacaggtttttaaaaatgtattcatgAACAGTTTGTGAAACTTGGAACAAAATCTCCCCTTCTCTTTTCTACATACTGTAGTACACGATGCACACAGACAGTTGGCCCTGTAGCTTTGTCTGGCGGTTTGCGAGAGAGCGGTGTCTTTTTTAGTCATACATACACCAAACATGATGTGAGGTTTTCAGATCCAGCTTCAGGTCTACCTTTCCTTGCAATTTGTCTTGCATGTCCCTCAATGACAGATATCCATAATACGGTTTCTACTGTCTCATCTACCATATCTCAGAGTAAAAGGTTATTCAACACAGTAAAACCACATTTTGATCAGTCTCTGTACATGGATCAAAAAGAGATCTATGGCAATATAGAGATTTTTATATAGCCGTAGATTTACAGCTGTAGGCTGCCTTACAAATGTATTcggaccccttggatttcttcaaatttattgtgttacaaagtcgaattaaaatggatttaattgcattttttttgtcaacCGTATACATACAAAACTCTgtaatgtcattttttttattaataaaatATAGTCATTTCATAAATGTTCAGACCcttttgtttaggcaagcctaaattagttcaagAGTAGAGTTTGGCTTAACTAATCACATGTATATGGACTCACTCTATGTGAAATAATAGGGTTTGACATGATTTCTAAaggactaacccttcctctgtcccccatacaacatctgtaaggtccctcagacaAGTATTGTATTTAAAGCACATAGTCAACTACAAAGTCCAGGAAGATTTTCGAAAGCCTCATTTGTAGGTGGGTAataataacaaatcagacatggACTAGCTCTTTAAGCATGGTCTAGTTCATAATTATGCTGTGCATCATGTATTAAACCACCTAGGCACCCCAAAGAAAAAGTAATtattctgaactgagctgcaggatgTGAATGAAACTACTCAGGTATCTAACCATCAGACCATTGtggattttaaaacagctacagagtttaatggctgtgatgggagagaactgaggatggatcaaataaaattgtattggtcacatacacatatttagcagatgatcaacaaataatgacctaaatgataGAGTGAAAAGATTAACacaaatatacaaaataatataatACTTGAATAAAACACGGCAAATGAATACagtttttggcctaaatgcaaagccctattttggggcaaatccaacacatcactgagtaactgtcTCCTTATTTTCAAGCTTGGTAGTGGCTGAATCATGGGATAGGGCTATAGAAAGAAATGGGATAGGGCTATACACAGTCAAAATCCTGGAGCAAAACcttcttcagtctgctttacaccagacactggaatgcacctttcagcagcacaaaaacctacaacacaaggccaaatctacactggagttgcttaccaagaaaacagtgTTTATTCCTAAGTGGCCAAGTCACAGTTTTGACTTTAATCTACTTGAAATAGTAAGGCATGACTTGAAAATTGCTTTTTGAACATAATAattggcaaatattgcacaatccaggtgtgcatagctcttagagacttacccaagaagactcgcagctgtagttgttgtcaaatgtgttttttatggactcagggagctgaatacATACGCAATGACTATATTTCCTTTATTTCTTTtgaacaataaaataaataaatatatgtatcttccactttgacattacagagtattttgtgtagattgttgagacAATAAAATCCAAGGGATCTCAATACTTTTGAAAGGCACTGTAACTGGggtattataaaaataaaaatatggctCAACTTCTATTTAGTCTTAGCTATGACATCAACCACTTATGTTTTGCAGGTTGTTTGACGTCAACTTTAAATTACCAATTTATCCAGCCGGTTGGAAATAGATGCCTATGGACATACAAATAACACTACATAAATCTTTCTGAGATACATGAAAGCAATATTGTCAGCTTTTCCTATCAGCGAATTTATCAGATTTCACTTTTTGCAATTACGTGACAcagatctgatggtgtttatcaTTATCAAAGCCGTTCATAACAGAATCCCACATGTATGATAACTGTATTAGTTCAAAGTATTTTTACAACTTGCATTTTATACACAGAGGTTTTAGCTGGATCCCCGCTTACAGTTTCAGGAGCACATTTCAGAAGGACAGAATATGCTCAGTGACTttaataacacacacagacacaccagcgTAGTGGTCCTGTACTAGAATTCAAAACCACATCCTTACctgaaacaaaaatgtattttgcagAAACATGCCCAATTTGTCTCTTTCCCTTTTGGTATTATGAAGTATTATAATGTATGTCATATTATGTTGCTACAGTatatgttgtttgtgtacatgtgaatATTTACAATTGTATTGCCTTTTTTGGCTCAAGCATATCATCAGCACCTTGTTTGTTATGAAGTATAGTTTTTAAATGAATTCATTTGAAATGTTAAATCCATTGATACATATTAATAATTATcaacatgttttattattcatATACTGTACTTTTCTGAAATGAGGGGCACTTCATCTTGCATATAACAATTttctgtaaatatatatatatattgaaattTTGTAAAATATGTGATAGtggaaataaataaaaagtataaCTCAGTTCTACAGTCTGtatatacataaaaaaaatagGGCTTTTCATTATTAGACAATAGCAAATACATTTATACATGTAAAGTCTTTTTCAGAGACACTCATTTATCTGATTTGATATACAGTACAATGGAGCTATTGATAATAAACAATGTTGTTATCTAAAATACTCATATAAATGATCAAACGTGGTGTCAGAAATTTGCCATTTAGCATTTTGGTTTGTGATTGTTTTCTTTCTCAAAACAAGAGAAGGTTTCCATATAAATATTGTCAAACATTTTATCAGATAACTGCTGTATAGATCAAACACAAATACGTTATTCTCCCCCCAGCCATGTTCAATTGAACAATCTTACAATTAGAAGTGCAGATTCATATCAACATTATATCAAACTATTTTATTCAGGGTTTAATTCACAATAGcatagttattttttttattttttaacttcaCTTGAAAGTTAACTAATATTTTGCAAGTGTACACAGAGGCTTATTGTATGCATGCAATACCACTCCCCTTTAGCATTATGAAAACCTTTTACAAGCATCCTTTTGTAATGGTAAGCAGGGTCAAACTTATGCAATAATGAATAGTGCCTCCTATCACAGCAAATCTCTGAAAAGCATCCACTTCAAAACTATTTCACAACTATAGCATCCACTTGAAACTATATGTCATATTAATTCAAATAATAGACCTTTGAATTGATACTCAGCCAGAGAAGTATTCGTAAAAAATAAAAGCACATCAACTCTGAAACCATTATGCAAACAGGCCACCTCCCATTTTCAGTTTATATTCAATGCACTGAGCCTTACCACATTGTTTCAATACAGTATCCCCATACCAGCCTTTTACATGCTGTATTAATCTCCCATGGAAGCTGAATATGATTTGCATGGATGCATTTTCTTGAAAACCTCGCTTAAAGAATTGAATTATTTTATCGTCATCATTTGGGTTTTGACCTCTCTGATACTGGTTATTTGTGCAACTACTTTCATTTTTTCATAATCATATTGCAGCATGCAAAAGCACAGAAGAGCCATTTGATATAACTGATTTTACACAGTGTTGAATGTATTGTGGTTCACAGGGAAAGCTCTATTGAATGTGTAAAAGCCGGAATACCAACCCTTGGGGAGCACCCTGTGAAATAATTTTGATTACACTTATATCTGTATGCGTTCAATATTAATTTAATTTCTGTTTAAATTATGTGTTTCTTTTATCTGCTTTTGAATAATTATTTAGTGATGCGAATGCCTTTGTTTCAAGCTTACTGCTATTATGTACAGTAATTGTTGTTCCTGTATTTATGTATAGTGCCTGTATTGTAAATTTATTCAGAGCTTTTCATTCTTACAGTAAAGTTGAGTTACTGCCCCACAATGTTTCAAAGGGAGACCCTAGTTCAAGGAATTCTACGAACAGATTTGGAATCCCAATGTTTTTCAAAGGTAGAAATAACAAGTGTTTTTCTCATTCTTTTTCTTTCTTCTGTTCTTTCTTTTCTGTTCTTCAAAAGTTGTCTAAATATTCTGTCAATATTCTTGATATGGATGGAGCTGTGAAATGAAACCGAGTTCAAACATAATGTATATTAATATGAACTGAGGCATGAAGGTTAATAAAGTTACATTTTGTATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289445 lncRNA downstream 56990 38206590 ~ 38206808 (-) True G254009
TU289408 lncRNA downstream 84555 38178992 ~ 38179243 (-) True G253972
TU289399 lncRNA downstream 89083 38174507 ~ 38174715 (-) True G253963
TU289385 lncRNA downstream 98833 38164644 ~ 38164965 (-) True G253949
TU289352 lncRNA downstream 118573 38145016 ~ 38145225 (-) True G253916
TU289775 lncRNA upstream 36255 38437543 ~ 38437876 (-) True G254326
TU289784 lncRNA upstream 52293 38453581 ~ 38453908 (-) True G254335
TU290010 lncRNA upstream 198794 38600082 ~ 38600376 (-) True G254553
TU290011 lncRNA upstream 199862 38601150 ~ 38601415 (-) True G254554
TU290013 lncRNA upstream 202383 38603671 ~ 38603983 (-) True G254556
XM_036974000.1 mRNA downstream 201042 37814709 ~ 38062756 (-) False LOC110519943
XM_036974001.1 mRNA downstream 201042 37814709 ~ 38062756 (-) False LOC110519943
XM_036974002.1 mRNA downstream 201042 37814709 ~ 38062756 (-) False LOC110519943
XM_036974003.1 mRNA downstream 201042 37814709 ~ 38062756 (-) True LOC110519943
XR_005039852.1 mRNA downstream 571793 37688775 ~ 37692005 (-) False LOC118944514
LOC110519947 mRNA upstream 375650 38776938 ~ 38778156 (-) False LOC110519947
XM_036974019.1 mRNA upstream 394405 38795693 ~ 39140087 (-) False LOC110519948
XM_036974061.1 mRNA upstream 394405 38795693 ~ 39140087 (-) False LOC110519948
XM_036974062.1 mRNA upstream 394405 38795693 ~ 39140087 (-) False LOC110519948
XM_036974063.1 mRNA upstream 394405 38795693 ~ 39140087 (-) False LOC110519948
TU287636 other downstream 1530358 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 1905827 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 2119226 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 3367502 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 3373844 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 997973 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 1243283 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 1417360 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 1921218 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 1933922 40335210 ~ 40335440 (-) True G256632

Expression Profile