RNA id: TU289675


Basic Information

Item Value
RNA id TU289675
length 5327
lncRNA type sense_over
GC content 0.35
exon number 3
gene id LOC110519945
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38263798 ~ 38401288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAAGAACTCTATGGATTGGatggctggatgactggatggAAGGGCTGTATGCATGTGTTTTGAAGCATAGGGCCTTGGATTGGACAATGGAATTAAAAGACACAGATTCCAATTTGCCTATGGAAAGTATTGTTGCACAGTTCCCGCCGTATAGTAGCTTCCTGCATCTCTGTGTTTCAGGACAACCCGTCACCAGAGGGTGCCATCCACACATAGGTTGTACCTATAAAAACTGGTTTGAGTGTTCTAGAATCAGTATTGAAGAACACGTTCTAGTACCAGTGTTCTAGATTAAGAAGCATCCGGAGCATCTCAATGTACCAGTGATATAGATGCAGAGTTGTTTTtgctatttgttttgtttttcattcAATGCATCTTGTTAACACACGAGATCGACCCAACCACATTGAGGCTCATCACCTTGAGCCTCTTCTGaactttttctttaaaaaacttTATTGGTGCATTTTGTGCAGTGATTAGCAATCAGTAAAGTGCAATCTCATTGGGTAAATATAGTTTTAATATGGAGACTTTTATTGTTTTCAGTTTATTGTATCTTGCTGTGTATGCCTGCTTTTGATACATTTCACAAAGAAACATCAATCCACACCCCAATGTACAATGAAAAATCTAATGAACATAACCGGTATGTGAAAACAACTTTGAAGCACCTTACAGATTCACACATATGATGATTCCATAATATTCAAGGATTTTGTTTCATATCCCTGGTATTTTCAGTGAAAGGGATTGGCATTGTGATCATCTGTGTGTTAGTAGTCTATAGGTAAAGCATATTTGCTTCAGTTCAGAGGGCTTACTCGGTTACTCTAGTTCAATTGGAAAGCAATACATTCAGAACAGGGAAATGTTGTTCTTGTATCCTTGTTCTGGTTGCTGATACCCAAAATGACCCTAAATTCCTCTGTTACAGATATATTTCTACCAGTGCCACTTCATACTCTATAGTACAAATTTCTATATTTCTACTGGGTTTGTAACTACAGCACAAAGATTCTAGGCAAGCTCACtgtaaacagtttggaaaatgtCACATTAAGGATGGGCGGTTGAGGAggaacaggtttttaaaaatgtattcatgAACAGTTTGTGAAACTTGGAACAAAATCTCCCCTTCTCTTTTCTACATACTGTAGTACACGATGCACACAGACAGTTGGCCCTGTAGCTTTGTCTGGCGGTTTGCGAGAGAGCGGTGTCTTTTTTAGTCATACATACACCAAACATGATGTGAGGTTTTCAGATCCAGCTTCAGGTCTACCTTTCCTTGCAATTTGTCTTGCATGTCCCTCAATGACAGATATCCATAATACGGTTTCTACTGTCTCATCTACCATATCTCAGAGTAAAAGGTTATTCAACACAGTAAAACCACATTTTGATCAGTCTCGCAATATAGAGATTTTTATATAGCCGTAGATTTACAGCTGTAGGCTGCCTTACAAATGTATTcggaccccttggatttcttcaaatttattgtgttacaaagtcgaattaaaatggatttaattgcattttttttgtcaacCGTATACATACAAAACTCTgtaatgtcattttttttattaataaaatATAGTCATTTCATAAATGTTCAGACCcttttgtttaggcaagcctaaattagttcaagAGTAGAGTTTGGCTTAACTAATCACATGTATATGGACTCACTCTATGTGAAATAATAGGGTTTGACATGATTTCTAAaggactaacccttcctctgtcccccatacaacatctgtaaggtccctcagacaAGTATTGTATTTAAAGCACATAGTCAACTACAAAGTCCAGGAAGATTTTCGAAAGCCTCATTTGTAGGTGGGTAataataacaaatcagacatggACTAGCTCTTTAAGCATGGTCTAGTTCATAATTATGCTGTGCATCATGTATTAAACCACCTAGGCACCCCAAAGAAAAAGTAATtattctgaactgagctgcaggatgTGAATGAAACTACTCAGGTATCTAACCATCAGACCATTGtggattttaaaacagctacagagtttaatggctgtgatgggagagaactgaggatggatcaaataaaattgtattggtcacatacacatatttagcagatgatcaacaaataatgacctaaatgataGAGTGAAAAGATTAACacaaatatacaaaataatataatACTTGAATAAAACACGGCAAATGAATACagtttttggcctaaatgcaaagccctattttggggcaaatccaacacatcactgagtaactgtcTCCTTATTTTCAAGCTTGGTAGTGGCTGAATCATGGGATAGGGCTATAGAAAGAAATGGGATAGGGCTATACACAGTCAAAATCCTGGAGCAAAACcttcttcagtctgctttacaccagacactggaatgcacctttcagcagcacaaaaacctacaacacaaggccaaatctacactggagttgcttaccaagaaaacagtgTTTATTCCTAAGTGGCCAAGTCACAGTTTTGACTTTAATCTACTTGAAATAGTAAGGCATGACTTGAAAATTGCTTTTTGAACATAATAattggcaaatattgcacaatccaggtgtgcatagctcttagagacttacccaagaagactcgcagctgtagttgttgtcaaatgtgttttttatggactcagggagctgaatacATACGCAATGACTATATTTCCTTTATTTCTTTtgaacaataaaataaataaatatatgtatcttccactttgacattacagagtattttgtgtagattgttgagacAATAAAATCCAAGGGATCTCAATACTTTTGAAAGGCACTGTAACTGGggtattataaaaataaaaatatggctCAACTTCTATTTAGTCTTAGCTATGACATCAACCACTTATGTTTTGCAGGTTGTTTGACGTCAACTTTAAATTACCAATTTATCCAGCCGGTTGGAAATAGATGCCTATGGACATACAAATAACACTACATAAATCTTTCTGAGATACATGAAAGCAATATTGTCAGCTTTTCCTATCAGCGAATTTATCAGATTTCACTTTTTGCAATTACGTGACAcagatctgatggtgtttatcaTTATCAAAGCCGTTCATAACAGAATCCCACATGTATGATAACTGTATTAGTTCAAAGTATTTTTACAACTTGCATTTTATACACAGAGGTTTTAGCTGGATCCCCGCTTACAGTTTCAGGAGCACATTTCAGAAGGACAGAATATGCTCAGTGACTttaataacacacacagacacaccagcgTAGTGGTCCTGTACTAGAATTCAAAACCACATCCTTACctgaaacaaaaatgtattttgcagAAACATGCCCAATTTGTCTCTTTCCCTTTTGGTATTATGAAGTATTATAATGTATGTCATATTATGTTGCTACAGTatatgttgtttgtgtacatgtgaatATTTACAATTGTATTGCCTTTTTTGGCTCAAGCATATCATCAGCACCTTGTTTGTTATGAAGTATAGTTTTTAAATGAATTCATTTGAAATGTTAAATCCATTGATACATATTAATAATTATcaacatgttttattattcatATACTGTACTTTTCTGAAATGAGGGGCACTTCATCTTGCATATAACAATTttctgtaaatatatatatatattgaaattTTGTAAAATATGTGATAGtggaaataaataaaaagtataaCTCAGTTCTACAGTCTGtatatacataaaaaaaatagGGCTTTTCATTATTAGACAATAGCAAATACATTTATACATGTAAAGTCTTTTTCAGAGACACTCATTTATCTGATTTGATATACAGTACAATGGAGCTATTGATAATAAACAATGTTGTTATCTAAAATACTCATATAAATGATCAAACGTGGTGTCAGAAATTTGCCATTTAGCATTTTGGTTTGTGATTGTTTTCTTTCTCAAAACAAGAGAAGGTTTCCATATAAATATTGTCAAACATTTTATCAGATAACTGCTGTATAGATCAAACACAAATACGTTATTCTCCCCCCAGCCATGTTCAATTGAACAATCTTACAATTAGAAGTGCAGATTCATATCAACATTATATCAAACTATTTTATTCAGGGTTTAATTCACAATAGcatagttattttttttattttttaacttcaCTTGAAAGTTAACTAATATTTTGCAAGTGTACACAGAGGCTTATTGTATGCATGCAATACCACTCCCCTTTAGCATTATGAAAACCTTTTACAAGCATCCTTTTGTAATGGTAAGCAGGGTCAAACTTATGCAATAATGAATAGTGCCTCCTATCACAGCAAATCTCTGAAAAGCATCCACTTCAAAACTATTTCACAACTATAGCATCCACTTGAAACTATATGTCATATTAATTCAAATAATAGACCTTTGAATTGATACTCAGCCAGAGAAGTATTCGTAAAAAATAAAAGCACATCAACTCTGAAACCATTATGCAAACAGGCCACCTCCCATTTTCAGTTTATATTCAATGCACTGAGCCTTACCACATTGTTTCAATACAGTATCCCCATACCAGCCTTTTACATGCTGTATTAATCTCCCATGGAAGCTGAATATGATTTGCATGGATGCATTTTCTTGAAAACCTCGCTTAAAGAATTGAATTATTTTATCGTCATCATTTGGGTTTTGACCTCTCTGATACTGGTTATTTGTGCAACTACTTTCATTTTTTCATAATCATATTGCAGCATGCAAAAGCACAGAAGAGCCATTTGATATAACTGATTTTACACAGTGTTGAATGTATTGTGGTTCACAGGGAAAGCTCTATTGAATGTGTAAAAGCCGGAATACCAACCCTTGGGGAGCACCCTGTGAAATAATTTTGATTACACTTATATCTGTATGCGTTCAATATTAATTTAATTTCTGTTTAAATTATGTGTTTCTTTTATCTGCTTTTGAATAATTATTTAGTGATGCGAATGCCTTTGTTTCAAGCTTACTGCTATTATGTACAGTAATTGTTGTTCCTGTATTTATGTATAGTGCCTGTATTGTAAATTTATTCAGAGCTTTTCATTCTTACAGTAAAGTTGAGTTACTGCCCCACAATGTTTCAAAGGGAGACCCTAGTTCAAGGAATTCTACGAACAGATTTGGAATCCCAATGTTTTTCTCATTCTTTTTCTTTCTTCTGTTCTTTCTTTTCTGTTCTTCAAAAGTTGTCTAAATATTCTGTCAATATTCTTGATATGGATGGAGCTGTGAAATGAAACCGAGTTCAAACATAATGTATATTAATATGAACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289445 lncRNA downstream 57025 38206590 ~ 38206808 (-) True G254009
TU289408 lncRNA downstream 84590 38178992 ~ 38179243 (-) True G253972
TU289399 lncRNA downstream 89118 38174507 ~ 38174715 (-) True G253963
TU289385 lncRNA downstream 98868 38164644 ~ 38164965 (-) True G253949
TU289352 lncRNA downstream 118608 38145016 ~ 38145225 (-) True G253916
TU289721 lncRNA upstream 70257 38339469 ~ 38339726 (-) True G254275
TU289775 lncRNA upstream 168331 38437543 ~ 38437876 (-) True G254326
TU289784 lncRNA upstream 184369 38453581 ~ 38453908 (-) True G254335
TU290010 lncRNA upstream 330870 38600082 ~ 38600376 (-) True G254553
TU290011 lncRNA upstream 331938 38601150 ~ 38601415 (-) True G254554
XM_036974000.1 mRNA downstream 201077 37814709 ~ 38062756 (-) False LOC110519943
XM_036974001.1 mRNA downstream 201077 37814709 ~ 38062756 (-) False LOC110519943
XM_036974002.1 mRNA downstream 201077 37814709 ~ 38062756 (-) False LOC110519943
XM_036974003.1 mRNA downstream 201077 37814709 ~ 38062756 (-) True LOC110519943
XR_005039852.1 mRNA downstream 571828 37688775 ~ 37692005 (-) False LOC118944514
LOC110519947 mRNA upstream 507726 38776938 ~ 38778156 (-) False LOC110519947
XM_036974019.1 mRNA upstream 526481 38795693 ~ 39140087 (-) False LOC110519948
XM_036974061.1 mRNA upstream 526481 38795693 ~ 39140087 (-) False LOC110519948
XM_036974062.1 mRNA upstream 526481 38795693 ~ 39140087 (-) False LOC110519948
XM_036974063.1 mRNA upstream 526481 38795693 ~ 39140087 (-) False LOC110519948
TU287636 other downstream 1530393 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 1905862 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 2119261 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 3367537 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 3373879 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 1130049 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 1375359 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 1549436 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 2053294 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 2065998 40335210 ~ 40335440 (-) True G256632

Expression Profile