RNA id: XR_005044896.1


Basic Information

Item Value
RNA id XR_005044896.1
length 3595
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110519952
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39231882 ~ 39252150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCAGGATGGTTCGTTCGAGGCTTCGTTCCCTTTCTAACCTTGTAGAACGTTGAAAGGACACTTCTGGCTGATTGTTCGACAGTGACCCCCCTCTCTGACAATTTAGCCTGGGGTGTAATCGTTAGTACAagtatggaacgccgtttgggtcttaaaGCACGTGGTCAAAACGCGATCTTTTTAATGCAGTTGCACACCAAAAATAAAACGGGAGTtgctattggacaaattcagatagGATCCTCCTCGTTTCTTTCCGTTTGCAACCGTTTCAGCGTAATGAATATCTGGAATCCATGGGACGTCCATACCCCCCACCACTTCACATTCAAACTTGGGTGGACGTGACAAAGACAACGTCCAATGGACCCCAGACAGCACGGACCAAAGATAGCGGGCGATCTATAAAAATCCGCCTGCCGCAGAGAACACAGAAATACGAATTTGACAACCAGAAGCATGTTGTTTatatattgtaacgaccctgggtttataagcgcggaaatcgactctgtcGCTCGGGCATGCTTCTGCGGCatagtcgatagcgcgccggacctcgggctcgaagggCGAGGGTTCGAGACTTGCTCCCTCCCTGCCTGTTTTATTACAATATATTAATGCTTAAATATAGCGATAAATGTATCAATCGTAATAGCTAACTAATTTCTGTTGAGTGTGTTAGCAAGAATCTTTCTAACGTTAATACATTGCATTTGGTAGCGAGTTTCATAACCTAACTAATTAGTAGTCTAGCAGCAACAGACTAGCTAGtttagagatttttttttttacatgaggCACCAATACCTTGCTTGATTTACAATGCAAATCTGATGGCATGAGCAACAGAACAGACTAGTTAGCTCCGTAGAATGACGTCAAAGCGTAGACTTTCAAATGGACCTAACGTTAGCCTTCTAACGTATTTTCTCTAAGCCTGGTCCAATATCCCACGTCAATATCGGCGTGCCTTCTGTCCCTAAGGGTCTATGCTTATGAATGAAGATCCAACTGCGAGGAACACAAAGCCTGACCTCTTGTCGGTGTTGAGGAGATGTCATTGACAGCAACATGCTTTTTGCCGGCAGCAGCAGCACCGATGACCCCATATCTAGCGCTCTCTCTGTCGGTTCATCTTTTCGTTTCTTGACCGCAATCTGCATGGGAATCGCCGCAGCATGACTTTTTCAGTTTGGATATGGGGGCCTCACCGTAACGTGATTTTTTCGGAAgatttttatttatatatcctTCGCCTTGCTGTGTTTCTTGTTTGGAAGCTTTGGTCTCCTCGTGAAGAAGGGTCCTCCTAAAATCTGCAGATTTGAAACTTCAAAGAGACGGTCTACTTACCTGTTGGACTTGTTTAACAAATTAATGGGACGATTCACAGTGCCCCTTTTGGAGTCTGCACAGACGAGAAGATTGGTGGTATCACACAATGTTGACAAGGCCCTTAAAGAAGGCAAATTCAAGACACTGTCAACTGGCTCTTCAGTGAGCAGATGCTTGTTTGCTACATCAACATTCTCCGGAACACTTTCTGGCCCAACGGAAAACTGGCCCCCCAAATCAAGGCTCGGTCCAACTCAGAACGTCAGGAGACCAAAGAGAGAGCACAACAGAAGCTACTAGACAATATCCCAGATGCACTACAGAATTTGGTGGGACAGCAGAGCGCCAGGTATGGGATCATCAAGATCTTCATCTCCCTTCAGGAGACATGCCAACAGGCATCTACTTTATGTTCTGATGGATAATCCTCAAAGAGCTCTGTCCAGAACTCAACGTGGAGACGGACCAAAGCTGATAGTGCGAGgcttatactgtatgtacacaacACAGGATAGTGTATGGTTAATGTGGAGCAGAACCCTAATTTTAAGGCTGCTCATCCCAAAttgcacttttgaccagagcccctctTCTCCCATAGgccataaagtagtgcactataaggaaaagagtgtcatttgggactaaCTCCGACACAGTGAAGGACATGGTGGTGCTCCTGGAGATCTATGTGGGCTTAAGTTATATTGGTTTTCAAAAGAGAGACACTCAAAGGATTATGTATTTTGAAGGATTATGTATTTTCTTTTGTAAATTTTCATTTGTATTCAACAGATAGATCATGAAACATGACATCAACACAAATGTACTATGATGTTCCAGCAGGGTACAGTTAAAAATGTGATTAAACTGAATCCAAATGGATTATGTATTTTCTGTTGTTGTTCTGAGGTACTTTTTTTATCTGAATGCAGTTGATTATTTAGAGCTCAAACTAGGGAGACAAGCTTTGGTTCGTGTTACTGCGttacatatttttgttcagtagctGAATTTTGACAAAAATGAGATCAGTTCCACTGCCAAAGATCCATTGCAGAAAGCCAGGCTGTTTGATTGATGTCTTTGTTTGTTTTGGATCCAGGTAGGATTTCCAAAATGTGAATAGTTGTGAAATGATGAGTGTTGTGCccatatgaagaaaaaaaaagctgCATACCAACCTCGGATACATTCCTGACCAATATGTTACATGTATATGTTCTTTGTACAATGGCTTCATTGTGTAATATGTCATGTAAAGTAATTGTGACAATTTTATTTGTGATTTATTGATAATTATTTTTTGATAAAAAATCAAATCTAAGAGCGTTTATAAGCAATAAATTGCTAAAGAAAAATGTTTGACTTGTTAAATCCTTTTTCATTTATACGCTTTAGGCAAATTCCTTGTCAATGTAAACTGCTCAATTTTATGAATGACTGGAACCAACTGAATTTGCATTCTACAAATGAGAAAATGGCATCTGAATTTAAAGGAACCCAGTTTTGTGCAGAGTAGTACAGGTAACAGTTCTAACTTGTAGAGTCGATAGCTTAAACAACAATTCTTACTGTTAAGCATTTACACTGAGCATCACCATAATCTTATTCATACCACAGACTCACACTGAACATAAGGCATTCAGGTCTGATGTTATTTACTCAGGTAATTCATCTCAATGGGACAGAGGAGGCTCCTTGTATGTAGACTCCTTAGCCAGGGTCATGATGGTGGAACTTTACATTTTGCCAAAGGTGGTGTCCATCTGGCGGTCCTTGCACACTTCTGGGTTTGCCTGAGCAGCCTAGCCAAAGATAATCCAGAAGTTAGCCTTAGATTAAGAATGTAGCTAAATCTTACTAAAATACTATCTTTAATTGGCCTTCACGAATGCTGCGTTCATAGCAAGTGGGAAACTCAGAAAAATACTATTTGTAATCTGGGAGCAACGTGTGTTCATTTGCTTTGAACTCGTTGAGAACGCCGATTGGCTAATGGCAAACAAGGTgtgtcaaccataaactaaaagtacagctatcatgcttgCAAACAAATTATAGTGTTCATAAGCCATATTAAGAAATTGTTTTTCATAAGTGTTTTGTTGCATTTAACTTCCAAAAATACTGTTAGAGGTAATTTCCTTGGTtagctgccaaggcagcatctatcaatcaatcaaatgtattataaagcccttcttacatcagctgtcacaaagttctgtacagaaatagagcctaaaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291310 lncRNA downstream 38610 39193052 ~ 39193272 (-) True G255662
TU291308 lncRNA downstream 40792 39190763 ~ 39191090 (-) True G255660
TU291289 lncRNA downstream 42995 39188367 ~ 39188887 (-) True G255651
TU291284 lncRNA downstream 50469 39181166 ~ 39181413 (-) True G255646
TU291283 lncRNA downstream 51558 39180092 ~ 39180324 (-) True G255645
TU291328 lncRNA upstream 402 39252552 ~ 39252766 (-) True G255679
TU291332 lncRNA upstream 20847 39272997 ~ 39273249 (-) True G255683
TU291335 lncRNA upstream 23185 39275335 ~ 39275557 (-) True G255686
TU291344 lncRNA upstream 31400 39283550 ~ 39288177 (-) True LOC118954848
TU291424 lncRNA upstream 155936 39408086 ~ 39410397 (-) True G255751
XM_036974019.1 mRNA downstream 91795 38795693 ~ 39140087 (-) False LOC110519948
XM_036974061.1 mRNA downstream 91795 38795693 ~ 39140087 (-) False LOC110519948
XM_036974062.1 mRNA downstream 91795 38795693 ~ 39140087 (-) False LOC110519948
XM_036974063.1 mRNA downstream 91795 38795693 ~ 39140087 (-) False LOC110519948
XM_036974024.1 mRNA downstream 91795 38796958 ~ 39140087 (-) False LOC110519948
XM_036974066.1 mRNA upstream 6641 39258791 ~ 39269170 (-) False LOC110519953
XM_036974065.1 mRNA upstream 6641 39258791 ~ 39269419 (-) False LOC110519953
XM_036974067.1 mRNA upstream 6641 39258791 ~ 39269466 (-) True LOC110519953
XR_005044924.1 mRNA upstream 30359 39282509 ~ 39288215 (-) False LOC118954848
LOC118944667 mRNA upstream 93615 39345765 ~ 39364915 (-) True LOC118944667
TU287636 other downstream 2498442 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 2873911 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 3087310 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 4335586 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 4341928 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 147111 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 392421 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 566498 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 1070356 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 1083060 40335210 ~ 40335440 (-) True G256632

Expression Profile