RNA id: TU291301


Basic Information

Item Value
RNA id TU291301
length 1561
lncRNA type sense_over
GC content 0.42
exon number 4
gene id LOC110519952
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39231882 ~ 39252150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAAGCGTAGACTTTCAAATGGACCTAACGTTAGCCTTCTAACGTATTTTCTCTAAGCCTGGTCCAATATCCCACGTCAATATCGGCGTGCCTTCTGTCCCTAAGGGTCTATGCTTATGAATGAAGATCCAACTGCGAGGAACACAAAGCCTGACCTCTTGTCGGTGTTGAGGAGATGTCATTGACAGCAACATGCTTTTTGCCGGCAGCAGCAGCACCGATGACCCCATATCTAGCGCTCTCTCTGTCGGTTCATCTTTTCGTTTCTTGACCGCAATCTGCATGGGAATCGCCGCAGCATGACTTTTTCAGTTTGGATATGGGGGCCTCACCGTAACGTGATTTTTTCGGAAgatttttatttatatatcctTCGCCTTGCTGTGTTTCTTGTTTGGAAGCTTTGGTCTCCTCGTGAAGAAGGGTCCTCCTAAAATCTGCAGATTTGAAACTTCAAAGAGACGGTCTACTTACCTGTTGGACTTGTTTAACAAATTAATGGGACGATTCACAGTGCCCCTTTTGGAGTCTGCACAGACGAGAAGATTGGTGGTATCACACAATGTTGACAAGGCCCTTAAAGAAGGCAAATTCAAGACACTGTCAACTGGCTCTTCAGTGAGCAGATGCTTGTTTGCTACATCAACATTCTCCGGAACACTTTCTGGCCCAACGGAAAACTGGCCCCCCAAATCAAGGCTCGGTCCAACTCAGAACGTCAGGAGACCAAAGAGAGAGCACAACAGAAGCTACTAGACAATATCCCAGGTTCTGATGGATAATCCTCAAAGAGCTCTGTCCAGAACTCAACGTGGAGACGGACCAAAGCTGATAGTGCGAGgcttatactgtatgtacacaacACAGGATAGTGTATGGTTAATGTGGAGCAGAACCCTAATTTTAAGGCTGCTCATCCCAAAttgcacttttgaccagagcccctctTCTCCCATAGgccataaagtagtgcactataaggaaaagagtgtcatttgggactaaCTCCGACACAGTGAAGGACATGGTGGTGCTCCTGGAGATCTATGTGGGCTTAAGTTATATTGGTTTTCAAAAGAGAGACACTCAAAGGATTATGTATTTTGAAGGATTATGTATTTTCTTTTGTAAATTTTCATTTGTATTCAACAGATAGATCATGAAACATGACATCAACACAAATGTACTATGATGTTCCAGCAGGGTACAGTTAAAAATGTGATTAAACTGAATCCAAATGGATTATGTATTTTCTGTTGTTGTTCTGAGGTACTTTTTTTATCTGAATGCAGTTGATTATTTAGAGCTCAAACTAGGGAGACAAGCTTTGGTTCGTGTTACTGCGttacatatttttgttcagtagctGAATTTTGACAAAAATGAGATCAGTTCCACTGCCAAAGATCCATTGCAGAAAGCCAGGCTGTTTGATTGATGTCTTTGTTTGTTTTGGATCCAGGTAGGATTTCCAAAATGTGAATAGTTGTGAAATGATGAGTGTTGTGCccatatgaagaaaaaaaaagctgCATACCAACCTCGGATACATTCCTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291310 lncRNA downstream 39659 39193052 ~ 39193272 (-) True G255662
TU291308 lncRNA downstream 41841 39190763 ~ 39191090 (-) True G255660
TU291289 lncRNA downstream 44044 39188367 ~ 39188887 (-) True G255651
TU291284 lncRNA downstream 51518 39181166 ~ 39181413 (-) True G255646
TU291283 lncRNA downstream 52607 39180092 ~ 39180324 (-) True G255645
TU291328 lncRNA upstream 1288 39252552 ~ 39252766 (-) True G255679
TU291332 lncRNA upstream 21733 39272997 ~ 39273249 (-) True G255683
TU291335 lncRNA upstream 24071 39275335 ~ 39275557 (-) True G255686
TU291344 lncRNA upstream 32286 39283550 ~ 39288177 (-) True LOC118954848
TU291424 lncRNA upstream 156822 39408086 ~ 39410397 (-) True G255751
XM_036974056.1 mRNA downstream 92844 38796958 ~ 39140087 (-) False LOC110519948
XM_036974066.1 mRNA upstream 7527 39258791 ~ 39269170 (-) False LOC110519953
XM_036974065.1 mRNA upstream 7527 39258791 ~ 39269419 (-) False LOC110519953
XM_036974067.1 mRNA upstream 7527 39258791 ~ 39269466 (-) True LOC110519953
XR_005044924.1 mRNA upstream 31245 39282509 ~ 39288215 (-) False LOC118954848
LOC118944667 mRNA upstream 94501 39345765 ~ 39364915 (-) True LOC118944667
TU287636 other downstream 2499491 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 2874960 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 3088359 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 4336635 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 4342977 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 147997 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 393307 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 567384 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 1071242 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 1083946 40335210 ~ 40335440 (-) True G256632

Expression Profile