RNA id: XM_036974066.1


Basic Information

Item Value
RNA id XM_036974066.1
length 2002
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110519953
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39258791 ~ 39269466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTGCTGAAGAGTTATGTATCCATAGAATCATGAAGCGACCATGTAAACCCTAATCGAAAGCAATAGAACCTTGATCCGATCATGGGCAACCGACAATCCGACATGGAATGAAGTTTATTTTCACTTTTGGGTTGACATGTCAGCCAGCTTTCTGGTGAACTTGAACAGCTGTCAGTTTTGGCCACAGCATGACTTTGCGAGACGGATGCAATGTATATTTGTTGCCAACTGTGGCGCATAGCGCACCAGAATGTCGATAAACCATTGAAGTAACCATTTATCGGCCACCATGCCAGTGGAGAGGATGCGAATGCGACCATGGCTGGAGGAACAGATCAACTCTTGCCTAATTCCTGGGCTGAAATGGGTTAATAGAGAGAAGAGGATCTTCCAGATTCCATGGATGCATGCTGCAAGACATGGCTGGGATTTGGAAAAAGATGCTCCTTTATTCAAGAACTGGGCCATTCATACAGGAAAATACCAACTAGGGATCGACAAACCAGACCCGAAAACATGGAAGGCCAATTTCCGCTGTGCAATGAACTCTCTGCCTGATATTGAGGAGGTGAAAGACAAGAGCATCAAGAAGGGAACCAACGCTTTCAGGGTATACAAGATGCTGTCTGCGTCAGAGCGCCAGACCAAGAAAGGAAAGAaaaggagggaaaaagagggAAAAAACAAGGAACAGGTGGAGCCCAGGTCCTCATCCATGGAGAGCATGAATGGGTCTGTTGAAGACCATGAAGTGGTGAGGATAGAGGTGAAGGATGAAGTGAAAGAGGAGTACATTACAGACTGCACAGCTTCCTCAGAATTTCTTCATCCGGGCAGTCGCAGCCCTGGGGATGACCAGCTGATCATCGATGACCTGCCATATGTGTGTCAGACCATCGAGGTGACCACGGAGAATGAGGAGCAGTCAGTCAGCTCCAGCCACCCGTACCCACTCCAGATCTCCCCTGTGTCCTCGTATGGAGAGAGTGACACAGACAGTGTGCACAGTGAAGAGGACTCTAAGGAGCATCTTCATGGTGGGCTGTGGGGATCAAGTTTAGCTTCCTCTGTGCTGAGAGTACCATCGTGCTCACTACCCAGCATGGCCACCTTTGTCACTACTGGAAAGGTAACCAACTTCAAAGTGACCAGCACCAGGGACCCCATGCCCCTCATCAGCTACAACAACAGCCCCTGGAAAAGGGACATGCCAGCAGCCCTACACCCTCCTTCAGAGCAGGCTTCCTCCAGCCAGGCCTCTGCTGCAGAGACCCGAGCCAGCGTTATCATGAAGACCTCAGACATCTCTAAGTCCTCTGTGAAGACCTGCTGAAGACCTGGCAGTGCAGTGACTCAAGATATGGGCCAGTCAGTGGCAGGCTTGGCGTTGAAAAGCCTTGATCACAGCTGGCCTTCTTGTTAGACCAGAGTGCCTGCTGGCCTTGTTCGACCAGAGTGCCTACTCATAGGAATGACtgggacatacagtacagtataggggTATGGGGCTCTGTGAGCTGTAGAATATGGATCGATGCCCAAACTGAACCTCCCAAGATCTCAGGGCCTTTTAGATGCGATGGGAGAGAATTAATCTACGAACTGTGAAAATATTTGTAGGGCATCTCATCCCACTTTGCCCACTGTTAATAATGTACATACTAATTTGTCTGCGTAATGGCAAACCGCTTCTGCACCTTATGGAAAGCACTGACGGGGATGTGTCTGGCCACTCtgggctgtgtatgtgtgtacactaACAGCAAAGCTGAAGCTATAGTAGAGGCCTTGTAGAGGCCTTATCTATGGCTCACTTTGCAACCTTGTCTTTGGCCTTCAAGGAGATGCCATCCATAGGATAAAAGGAAGAAGTGAATAAATGCACTTGGTAATTTATCTAGATGCCTTATAAGGCACTCTCTTTTaagcatatatatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291328 lncRNA downstream 6025 39252552 ~ 39252766 (-) True G255679
TU291303 lncRNA downstream 7409 39237182 ~ 39251382 (-) True LOC110519952
TU291301 lncRNA downstream 7527 39232931 ~ 39251264 (-) False LOC110519952
TU291310 lncRNA downstream 65519 39193052 ~ 39193272 (-) True G255662
TU291308 lncRNA downstream 67701 39190763 ~ 39191090 (-) True G255660
TU291332 lncRNA upstream 3827 39272997 ~ 39273249 (-) True G255683
TU291335 lncRNA upstream 6165 39275335 ~ 39275557 (-) True G255686
TU291344 lncRNA upstream 14380 39283550 ~ 39288177 (-) True LOC118954848
TU291424 lncRNA upstream 138916 39408086 ~ 39410397 (-) True G255751
TU291488 lncRNA upstream 198407 39467577 ~ 39515975 (-) True G255808
XR_005044896.1 mRNA downstream 6641 39231882 ~ 39252150 (-) False LOC110519952
XR_005044901.1 mRNA downstream 6641 39231882 ~ 39252150 (-) False LOC110519952
XR_005044907.1 mRNA downstream 6641 39231882 ~ 39252150 (-) False LOC110519952
XM_036974056.1 mRNA downstream 118704 38796958 ~ 39140087 (-) False LOC110519948
XR_005044924.1 mRNA upstream 13339 39282509 ~ 39288215 (-) False LOC118954848
LOC118944667 mRNA upstream 76595 39345765 ~ 39364915 (-) True LOC118944667
XM_021596863.2 mRNA upstream 119605 39388775 ~ 39393540 (-) True LOC110519954
XM_021596865.2 mRNA upstream 142062 39411232 ~ 39508802 (-) False LOC110519955
XM_021596864.2 mRNA upstream 142062 39411232 ~ 39508805 (-) False LOC110519955
TU287636 other downstream 2525351 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 2900820 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 3114219 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 4362495 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 4368837 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 130091 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 375401 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 549478 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 1053336 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 1066040 40335210 ~ 40335440 (-) True G256632

Expression Profile