RNA id: XM_021596863.2


Basic Information

Item Value
RNA id XM_021596863.2
length 4169
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110519954
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39388775 ~ 39393540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGTGACGTATTTCCCTAGCCAACGCAGGGGATTGTGGGAGGAAAGGTTGAGGATCACAGGGAACGTGATAATGGAAGGGAACTCTAAACACCGAACTATTGTAGGTGGAAACACAAAATCCGTAATCTACAAGCAGATTTCTGTGAGAAGTAAATGGTATCACTCCTGTGCCACAATTATTTCGTGAAACATCAAAGCGCTCTCTGTATGCGAATGTAACTTAAGTTAGCAAGTGTGGCTAGCCAGCCATAGGTGGCCATTGTTTTTGTTTAGTAAACGAAGTGAAAGCAATATAAAACCAGTGTTTTCCCCAACCGAGGAAGGGCCCAGCAGAGGGGCAAACTGTTTGAGTAATGCGGTTTGGTTTCTCTCGGGAAGATGGATGAAAAGTCCACCAACCAACACCGGCTCTATATTGCCCTGGTGATGGTGTTGCTCTTTGGCGTTATTGTGCTTCAGTACGTTTGTCCTAGCTCCGATTGCCAGCTGTTGCACATAGGATCATTGTCCTCCAGGTCGGGCGGCAATGCCATCGGGTCCCGGGGAGAGGTGAACGACATTGGCCTCAGTGGAAAGGACCCGTACGTCGCTGAGGACGGTGCCCTAGCCCGGTTCGTTCCCCGCTTCAATTTCACAACTTCCGACCTCAGTCGCCTTGTTGACTTCAATATCAAGGGAGACGATGTTATTGTTTTTCTTCACATCCAGAAGACAGGGGGCACAACCTTTGGTCGACATTTAGTGCGTAATATTAAACTCGAGAGGCCTTGTGAGTGTCATGCTGGCCAAAAGAAATGTACCTGTTACCGGCCAGGTAAAAGGGAAACGTGGCTTTTCTCCCGGTTCTCGACCGGATGGAGCTGCGGTCTTCACGCGGACTGGACAGAGCTGACCAACTGCGTGCCGTCCCTCATGAACATGCGTGAGCCACCCAAGAAGCCTACAGTTCCCAGCCGGAACTACTACTACATCACCATCCTGCGTGACCCGGTGTGGCGCTACCTGAGTGAGTGGCGGCACGTGCAGCGTGGTGCCACCTGGAAGGCCTCCCTGCACGTGTGTGACGGTCGCTCCCCCACGCTGGCCGAGCTGCCCAGCTGCTACCCCGGGGATGACTGGTCAGGCTGCTCTCTGAAGGATTTCATGGACTGCCCCTACAACCTGGCCAACAACCGGCAGGTCCGCATGCTGGCAGATCTCAGCCTAGTGGGCTGTTACAACGACTCGGCCATGAGCGAGGACGAGCGCTGGGCCGTGTTATTAGAGAGCGCCAAGCGGAACCTGCGGGGTATGGCCTTCTTTGGCCTGACAGAGTACCAGAGGAAAACCCAGTATCTGTTTGAGAAGACCTTCCGCCTGGCGTTCATCGCCCCCTTCACCCAGCTCAACGGGACGCGGGCGAGCAGTGTAGAGGTCGCCCCTGAGACGCAACAACGGATCCGCCAGCTGAACCAATGGGACGTGGAGCTGTATGAGTACGCACGTGACCTGTTCCTCCAGCGCTTCCAGGTGGCCCGTcagcaggagaggaggcaggCCAGGGAGAAGAggcagcaggagaggaggaggcttcGAGGGAGGCTGGGGTCAACTAGGCTGGGGATAGGATGGCCGGTGGCGATGTGGCCCAGCAACAAGCCCCATTGGACAGAGACCCAGGCCGGGGAGGCGATCACCACCCACCTACGACCACCCACCCCAGAGATGAAGCAGGAGAGAGACGGTGGAGGGGCGGTTGAGGCTGAGGTGCAGCTGCCAGAGTGGtggggtctggaggagaacagcaCCATGGAGGACTACATGGACAATGTGGAACAGTGGCGGTAGTAGTGAGAGGACCAAGCCGAAGAAGGAGTGAGCCATGTGAATTTTCCAGGCTTGCCTTGTCTGCACAGACATTATGGGTGTGTCCCAATATCTCCtttctcccaaagtgtgcacaTGTTCACGTCCCTTTGTGAttttgaaaggaaatgactggtataaGAAAAATGTGGTTTTACCCATGCCTACACCAATCCAGCGCTATTAAATATTTGGGGAATAGTGAACAAATGCACACTTCAGGAACAAAGAGATATGGGACATATCCATTTTCAAAACTCGCTAACCACGCACAGCTCCCTTTAGCCTGCATCCCAACCTTTAATCCAGGGGTTCTGAAACATTTTTGGCCATGACCCCATTTTGATATGTGAAAATTCTCACAACCCCAACCATGTGAAGTTTACTATATGGCggtcaattgaaaaacattccttcAGTATTTCTGATTGTATTCTCAACCCACCCTCATATACTTTTAATGTGGGGCCATGACAGTCAATTGCAAATTAGTCTGACAAAATGGATCtcatctcaccaccactaatgagaggGGTGTGCTTGATGCATGTCGCGTCGGAGCTACTCAAAGTCAGGGGACGTGGTCGACAGTGCGCATCTCATCTCTCCTGTCACATTCAACCTGGATCGATATTTGTTTTTAATGCAGACGAGAGCACTGAATCAGTTTTAATACCCGGAGGGAGATGGCACAGTTTTCCCTTTGAGTTAGGTCCCAAAACTCCTCCATATCAGCTGTGTCATTTCATTTACCGGCATGTCAACTGCACCAGGATCACAGTCAAATGGATTTCCATCTGTATAATATTTTTCTATTTCCCCTGCATGCTTGCGTTCAGTTCCCCAAATATGTATGTTACATAGGCAAGGAGACACATCTTCTTTTCATGACACAGATAGTCAACAAAGTCTGTTTTGACATCCATTGCGAATGACAACCGTTCCCCTCTCAATTCTAAAAATCATTCCAACACTACCCCTCGATAACCACCAAGCCTTGCATGAAATGGAGCATTGTCATGCTATGATCCCATATGTCCACATAGTTTTGCGAACAGGCTTATGCGATATAGTTTACAATCTAAGTTACCTGCTGCATATCTCCAAGTTCTGTGCACAGCTCTTTTGCCGCCAGTTGCTCTTGGTGTATCCATTATGGCTCAGTGGGTGTGTCATACAATGCGTCCATATGGCAgggggagacacattcataactagagtgcaCAGGCCTACCCGCGATAGATGGATCCCCAACTGTGCAAAAGCCCACCATTCAATCCCATGGAATCTGTTTTTGTTAATATAGCCACGGGGCACACTGAACATCCCCTGTGCCGTTTCATGCTCGTGAATCGTGAGACAGAACAATATGTTGTTGAGAATAGCATCCCCCGACATGTAGTGAACAAAAGTCAATGCATCTCGGCCCTCACAGCTAGCATCCAATTGGAGAGCATAAGATGGGGAGTTATCTGACAAAGGTGTTGATGTGAGTTTATGTGCCTTTGCCTCACCACATTGTTTTCATCATATCAATTGTGGCCAGTAGTATCAAAGTATCTGAAATAGTGTATGGTTTCATAGCATACTGGGCTTAGCCATTCACCGTGGAATAATTTTTAAGTGCAATGGTCAAGTGTGGCCTTTTCCAATGATCTAAGGGCGCTCTCTGGTTGAATTTCACATTTTTAGATTTTAATCATTTTCATCTCGATTTTTAAGGTGaaccacattacaatgattttAAGAGACAAAAACAATATTATAACAGGATTTTGGAAATTCTCCTGCGACCCCATTTTCATATCAGGCGACCCCTACGGGGTCacgacccctagtttgggaaccgCTGCTTTAGTCCATGGCCAGTTTTCCATTTCGCTATACCTACTTATGTTTCTTGAATGTAATTTGTTTTCATGTACTTCACTTACCCACATTGTGGCCATGACATTTCTGAGAGAGAATACAGTGCttgtcccaattggcaccctattccctaatatagtgcactagttttgactagAACCTGGACTAGAACAaaactatatagagaatagagtgccatttgggccaGGACCACCACCAATCCCATGCCCCTCACAATCACCCAAGCCTTCTGAGGAGATCCCTACGATTCTGGTGCAGAACTGTTGGTTACTAGTACAGAAATGTTTTAATTATAATAATTTTGATATtgaggtacagtgcattcaggaagtattcagacccctcgactttttccacatttagttatgttacatccttattttaaaatggattcgatagttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K08102 HS6ST2; heparan sulfate 6-O-sulfotransferase HS6ST2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291344 lncRNA downstream 100598 39283550 ~ 39288177 (-) True LOC118954848
TU291335 lncRNA downstream 113218 39275335 ~ 39275557 (-) True G255686
TU291332 lncRNA downstream 115526 39272997 ~ 39273249 (-) True G255683
TU291328 lncRNA downstream 136009 39252552 ~ 39252766 (-) True G255679
TU291303 lncRNA downstream 137393 39237182 ~ 39251382 (-) True LOC110519952
TU291424 lncRNA upstream 14546 39408086 ~ 39410397 (-) True G255751
TU291488 lncRNA upstream 74037 39467577 ~ 39515975 (-) True G255808
TU291581 lncRNA upstream 224103 39617643 ~ 39621075 (-) True G255897
TU291596 lncRNA upstream 252810 39646350 ~ 39646598 (-) True LOC110519961
TU291600 lncRNA upstream 263487 39657027 ~ 39657546 (-) True G255916
LOC118944667 mRNA downstream 23860 39345765 ~ 39364915 (-) True LOC118944667
XR_005044924.1 mRNA downstream 100560 39282509 ~ 39288215 (-) False LOC118954848
XM_036974067.1 mRNA downstream 119309 39258791 ~ 39269466 (-) True LOC110519953
XM_036974065.1 mRNA downstream 119356 39258791 ~ 39269419 (-) False LOC110519953
XM_036974066.1 mRNA downstream 119605 39258791 ~ 39269170 (-) False LOC110519953
XM_021596865.2 mRNA upstream 17692 39411232 ~ 39508802 (-) False LOC110519955
XM_021596864.2 mRNA upstream 17692 39411232 ~ 39508805 (-) False LOC110519955
XM_036974071.1 mRNA upstream 17692 39411232 ~ 39508811 (-) False LOC110519955
XM_021596868.2 mRNA upstream 237959 39631499 ~ 39643295 (-) False LOC110519957
XM_021596871.2 mRNA upstream 237959 39631499 ~ 39643295 (-) True LOC110519957
TU287636 other downstream 2655335 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 3030804 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 3244203 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 4492479 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 4498821 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 5721 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 251031 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 425108 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 928966 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 941670 40335210 ~ 40335440 (-) True G256632

Expression Profile