RNA id: XM_036974071.1


Basic Information

Item Value
RNA id XM_036974071.1
length 2397
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110519955
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39399261 ~ 39508811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTCCAAGCTCCACCCCGGGCATTTTGTGTTGCCAAGTCTTTGTCCGGAACTCGCAATTCTGGCTATCCACTGGGACTTTGCTATGCGCTTAGCCTCAGGACTTTAGCACACGTATAATACAGTCGAGTGTCCTGTCTGTAAAGAAACTGTAGCTCGCTGAAGATTGCAAACATTTTCGGTCaactttttttaataaaaaaacttattttattttttatttttcctccCCATCATTGTCCTTCGTTGGAACCGAAGTCGAGGTGGATGCAACTTTACAGACACATTGTAAAAACAAGTTTGGCTGTTTTCGTTTGGTTGCCTATTTTAGGAAAATTGTAATACGTTTGAAACTAATGTTTTGTTCCTTGCTTTTTGATTCTATGGGAGAGTCTGGAACTCGAAAAACATTTTGAAGACTAAAcgctacttttttttttacaacattgCCTTCATGTTTCCCATATATGTATAGTTTTAAGGTGGCCCAAGCACGTTTGTGAATTAAGAATCCGGTTAGCTAGTCAACCAATTCGGTAACTTTTAGAGCTTTAGCTAGTAGCCAGTGAAGTGTAAGGAAATCTGGGTCTCCATGAAGAAATCCCAACGTGCGAGTTGAAACTGTCCTAGTAACCTAATACAACTGAACGCTTTTCTCGTGTTTTGTGTGCccataacatttttattttatttaaccgaCTCAATGAACACGATGTTAGTGTTCTCTACGGTTTACACATTGGCCCTGCTTTTTGTTTCGACGAAGGCTGAGCCCAATTCGAAAAGCTGCATTGAAGTTAGGGCTGCATACAGTTCCAAAGGCTTCAACGTCAATGACGTTCCCAACAAAGGGGTACACGAATTCTTCCGCGAGTTGCTGGACAATGCGGAGCACTCGCTTAACGACATGTTCGTGCGCACGTACGGCCTGATGTATGTGCATAATGCGGAGCTATTCAAGCACTTTTTCCAGGAGCTGAAGCGCTACTATGTGTCAGGCAGCGGGGCAGTCAACCTGGACTCCATGCTGTCTAACTTCTGGGAAGACCTCCTGGAGAGGATGTTCCGATTGGTCAACGTCCAGTACGAGTTCAGTGACGCCTACATGGAGTGTGTCAGCCGCCACACCGAGCAACTGAAACCGTTTGGTGACGTGCCGCGCAAGCTCCGCCTCCAGCTGACACGGGCCTTTGTCGCGGCGCGCACCTTCACACGTGGCCTGGCGCTCATGCCCGAGGTGGTCAACAAAGTCTCCACGGTCAGTGCATCCCCTAGCTGTGTGCGGGCAGCCATGAAGATGTTGTACTGTCCCTACTGCAAAGGCCAGGTGGCCCTCAAGCCTTGCCAGAACTACTGTCTCAACGTGATGCGTGGCTGTCTGGCCAACCAGGCTGACCTCGACACAGAGTGGAACAACTTCCTGGATGCCATGTTGAGTCTGGCTGAGAGACTGGAGGGGCCCTTCAACTTTGAATCTGTGATGGACCCCATTGACGTTAAGATCTCTGAGGCCATCATGAACATGCAGGAGAACAGCATGCAGGTGTCACAGAAGGTGTTCCAGGGGTGTGGTCAGCCTAAACCAGGTAATGGCTTCCGGTCGCATCGCTCAGTCAAGGAGTCAGGATTCACCGGTCGCTTTCGACCCTACAGCCCTGACGCACGGCCCACTACTGCTGCTGGCACCAGCCTGGACAGACTGACGACAGACGTGAAGAAAAGGCTGAAGCATGCTAAGAAGTTCTGGTCCACGCTGCCAGAAACCGTGTGTGCTGGGGAGAGGATTACGTCGAGGGATGACTGTTGGAACGGAACAGCAAAGAGCAGGTACGAGTCTGTTGTCATGGGCAACGGATTGGCCAATCAGGTGTCCAACCCGGATGTGGAAGTGGACATTACAAAGCCAGATGTGGTGATTCGCAGTCAGATCGCAGTGTTGAAGGAAATGACCAGCTGGCTGAAGGCCGCCCACAGCGGCAATGATATCTCCATCGACCAAGGTGAGGATGatGAGGATGGTAGCGGAGGACAGGAGAGTGGTAGCGGCTGTGACTCTCCATCCTGTGAGGCGGACCGGGACATCTACTTCTCCATCCCACCCACCCCCATCAATCCCCGCGTGGTCAAGGTGGTGCACCAGGAAACGACCGGTGGAGACCGTATGGCGCACGGGAGCATGGCACTGGCACTCTGTGGGCTCACCCTGGCCCTGCTCGCCCCCCATTGgcgataaagggagagagagtgagaaagtaaGATGGAGAGAAGGGAAAAACTTTCAGACTTTTAAGAAGACTGCCTTCAGGACCTGTCTGCCCGCCATCATGTGGGGGGGGGGACTCTGAGTTATTTTAATTGTTCGTTCGTTTTTATAAAAATGGTCAATACTGTACAGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291424 lncRNA downstream 835 39408086 ~ 39410397 (-) True G255751
TU291344 lncRNA downstream 123055 39283550 ~ 39288177 (-) True LOC118954848
TU291335 lncRNA downstream 135675 39275335 ~ 39275557 (-) True G255686
TU291332 lncRNA downstream 137983 39272997 ~ 39273249 (-) True G255683
TU291328 lncRNA downstream 158466 39252552 ~ 39252766 (-) True G255679
TU291581 lncRNA upstream 108832 39617643 ~ 39621075 (-) True G255897
TU291596 lncRNA upstream 137539 39646350 ~ 39646598 (-) True LOC110519961
TU291600 lncRNA upstream 148216 39657027 ~ 39657546 (-) True G255916
TU291618 lncRNA upstream 163207 39672018 ~ 39672218 (-) True G255920
TU291674 lncRNA upstream 237033 39745844 ~ 39750074 (-) True G255966
XM_021596863.2 mRNA downstream 17692 39388775 ~ 39393540 (-) True LOC110519954
LOC118944667 mRNA downstream 46317 39345765 ~ 39364915 (-) True LOC118944667
XR_005044924.1 mRNA downstream 123017 39282509 ~ 39288215 (-) False LOC118954848
XM_036974067.1 mRNA downstream 141766 39258791 ~ 39269466 (-) True LOC110519953
XM_036974065.1 mRNA downstream 141813 39258791 ~ 39269419 (-) False LOC110519953
XM_021596868.2 mRNA upstream 122688 39631499 ~ 39643295 (-) False LOC110519957
XM_021596871.2 mRNA upstream 122688 39631499 ~ 39643295 (-) True LOC110519957
XM_036974079.1 mRNA upstream 137244 39646055 ~ 39652961 (-) False LOC110519961
XR_002472915.2 mRNA upstream 137244 39646055 ~ 39652966 (-) False LOC110519961
XR_002472914.2 mRNA upstream 137244 39646055 ~ 39660579 (-) False LOC110519961
TU287636 other downstream 2677792 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 3053261 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 3266660 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 4514936 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 4521278 34889506 ~ 34889954 (-) True G249978
TU291595 other upstream 135760 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 309837 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 813695 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 826399 40335210 ~ 40335440 (-) True G256632
TU295117 other upstream 2255006 41763817 ~ 41767588 (-) True G259259

Expression Profile