RNA id: TU292451


Basic Information

Item Value
RNA id TU292451
length 2741
RNA type TUCP
GC content 0.44
exon number 4
gene id LOC110519969
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 40440040 ~ 40452542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTTTTGATGCGTTGCTAGACTGAAGCAAACTGTGGATGTCCTAGCAACAAACAAGCACTTTACGTGTAGATATAGCTAGCGAACTAGCTAAACTATTGTTATATTTTTACAGTAGGAAGCTTTCTAGCTAGTAAACCGTTCCTGAAACGTAGCTAGCAAGGTACTGAAAGTTGGTGGCCAAAGCGGGCCAGTGAGGAGGTCAGAATGTCGGGCGACCTGGTAGGAGTGTGGGAAGTGGCCCTGAGCGATGGAGTCCATCGGATTGAATTTGAACATGGCACAACCACGGGGAAAAGGGTAATCTACATAGACGGAAAGGAAATTATAAGAAGAGACTGGATGTTCAAGCTGGTGGGAAAGGAGACCTTCAATGTAGGAAGTGCGGCTACCAAAGCGACCATTAACATTGACGCAGTGAGCGGCTTTGCTTACGAATACACCCTGGAGATCAATGGAAAGAGCCTGAAAACGTACATGGAGAACCGCTCCAAAGTCACCAACACTTGGCTGCTCAACCTGGACGGCATCGACTGCAGGGTCGTCCTGGGGGGAGTTTGTGGAAGACGGTACTGAGACACACTTCACTCTAAGCGACCATGACTGTTGCATTAAGGCCGTGAGCAGTGGAAAGAGGCGAGATGGCATTATCCACACTTTGCTTGTGGACGGCACAGAGATAGCCGAAACCACAGAGTGATTGTCTGTATAGGTGTTTTGAGCACTTTGTTGGAGTGAAGAAAGCCTTTTTCAAATCAGGGACAAAATAATAGACTGAACATTGGTGCTGTGTGATATTTCACTGTCAAGCTGGAGTCCATGAGGCACCTCTGCACAATGTCTATGATCTTAGATGGTTAACCACCAAAGATCATGGGCATCGGAATAAGGTGCCATTCGGGACACAGAACCTGTCCATGGGCCATGCAGCTCACTTATAATGCATTAATGTGCCAGTAATTTGCTTTTTTGTGTAGGCTGCAACATTCTAAAACAAATTAATTGTAATAACTGGAGCATTTATAAACAGATCTGTCCCGTGCATAGTTGGTAACATCAATGGTATGTTTATGTTAATGATTATTTGATGTCAGCCCTTACAATTAATTAATTCATTGAGTTTAGGCAAGTTTGGTAGGTTGCAAATTATAACGGTTGCAGATAAAGGAAAACCACACTGGGGGTTCACTCAGAATGTTGATGCTGAATTGGAGGTGTTAAGTGTTAAGAATGATTCATCTCAGTTAACCCAGAACTATAGTCTCGCATAATTGGTCAGATACTTGATTATGTTCTGGGTGTTTAGAGAATGAGGATCAAAACCGGAACGAAGAGCTTCACAATCTCTCTTTGCAAGTTACGGGCAAGTCTATGGGCAAAATGTCCACTCCCCTTTGGGAAAAAAGTGCTAACATCTGCAAAATTGCGATTTGTCCAAAGCACCAGAACTAAGGCTGCTCGTTATCCCATGCATCCCGTTGTATTTTGACAGATCTACGCTACCATGTATATTTATGTAGTCTGTCCAGGAGAGATGAAAAACTGACACTTGCCATTGGATATTGACGTGAAAATACACCTGTCCTAAGTATAACGTAAACCTGTCCATGTACCAGTTTTCCTATAtctgtgattgattgatttgggGTCAATTCAATGGAACGGGACTTATTTTGCTAGATTCTAGCCAGTGTCTGACATGAACGGAATGAACTGTGCTGTTACCCTCAGATTCAATTTATTTTATATCAAAAGAGCACTATATGTATTCAGGTATAGTTACTGCATTGTTTGTATTATgtacactgcatgaccaaaattatgtggacagacacctgcttgtcaaacttCTCATTCCAGAATCTTGGGCATTAAGTTGgtcacccctttgctgctataacagcctcctctcttctgggaagaattcagccacaagagcgttagtgaggtcgggcactgattaggcctggcttgcagtatgcgttccaattcatcccaaaggtgttcgatggggttgaggtcagggcactgtgcagcctagtcaagttctttcacaccgatcttgacaaaccatttctgtatggacctccttttgtgcacgggggcatggtgatcttaggcttgtgtgtggatgCTTGgctatggaaacacatttcatgaagctcccgacgaataggtcttgtgctgatgttgcttcgagaggcagtttagaacttggtagtgagtgttgcaaccgaggacagaataTTTTTACGCGCTACACACTTTAGCACTCagaggtcccgttctgtgagcttgtgtggcctgctACTTTTCGGCTGAGCCGTTGTCACTCCTAgactttccacttcacaataacagcacttacagttgaccggggcatctctagcagggcagaaatttgacaaactgacttgttggaaaggtgccatcCTATGACGGtcccacgttgaaagtcactgagctcttcagtaaggccattctactgtcaatgtttgtctatggagaatgtttgtctatggagattgcatggcggtgtcctcgattttatacagctgtcagcaacggatgtggctgaaatagccgaatccactcatttgaaagggtgtccacatacttttgtatatatagtgtatattttgttttgtgtgtcggGTGTTTCAACATGTTTGTAATGTGTATATTTTGTTGAACTTGTCAGACATTACTTATTTTATTACATCCATGTAATTTCACTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU292405 lncRNA upstream 69363 40370492 ~ 40370706 (+) True G256675
TU292403 lncRNA upstream 71332 40368421 ~ 40368737 (+) True G256673
TU292401 lncRNA upstream 72200 40367525 ~ 40367869 (+) True G256671
TU292388 lncRNA upstream 81541 40358198 ~ 40358528 (+) True G256658
TU292369 lncRNA upstream 99708 40340137 ~ 40340361 (+) True G256639
TU292976 lncRNA downstream 335015 40787195 ~ 40787426 (+) True G257218
TU293004 lncRNA downstream 354536 40806716 ~ 40807004 (+) True G257246
TU293005 lncRNA downstream 356288 40808468 ~ 40808734 (+) True G257247
TU293027 lncRNA downstream 369521 40821701 ~ 40822470 (+) True G257269
TU293028 lncRNA downstream 370398 40822578 ~ 40822788 (+) True G257270
XM_021596887.2 mRNA upstream 657665 39769763 ~ 39782404 (+) False asmtl
XM_036974091.1 mRNA upstream 657665 39769763 ~ 39782404 (+) False asmtl
XM_036974092.1 mRNA upstream 657665 39769789 ~ 39782404 (+) False asmtl
XM_036974093.1 mRNA upstream 657665 39769831 ~ 39782404 (+) True asmtl
XM_036974090.1 mRNA upstream 670643 39745774 ~ 39769426 (+) False LOC110519965
XM_021596897.2 mRNA downstream 8981 40461161 ~ 40701455 (+) False dnah7
XM_036974097.1 mRNA downstream 8981 40461161 ~ 40702678 (+) True dnah7
LOC118944668 mRNA downstream 406117 40858297 ~ 40861180 (+) True LOC118944668
XM_021596899.2 mRNA downstream 1102291 41554471 ~ 41725755 (+) True LOC110519971
XM_021596901.2 mRNA downstream 1287910 41740090 ~ 41767612 (+) True LOC110519972
TU290915 other upstream 771981 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 1595513 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 1839203 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 1998335 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 2347335 38092322 ~ 38092734 (+) True G253834
TU297744 other downstream 3799889 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 4068239 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 5386741 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 5481939 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 5623304 46075484 ~ 46079425 (+) True G263733

Expression Profile