RNA id: TU295485


Basic Information

Item Value
RNA id TU295485
length 680
RNA type TUCP
GC content 0.44
exon number 2
gene id col6a3
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42291728 ~ 42329627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATAAATATGGTTTTGATCAGTTCCATTTTCACTCTTACATCAGGATTTGAGTATTTGATAGCTTTGACATTTTAGGTAGATGCCTCCCGAGGCCTTTCATGTTGGATTTATTTCGTACCTCTGTAGGAATGTTCTCTATGATAGCACACAGTCCAATGCACACATTGACACTTTCTTTGAATGGTTGTTTGAGATTAGGGAAAGGGATGACTGTCATGTGAAGGAAGCAACTTTGTCCTGTTTTTCCCTTACCTATGCAtcatttaataaaacattttttttctgaacATTCACATTCTCTAGTTGAGAGTCAGGCTCCCAGGAGGGATGTTGTGTTCTTGCTGGATGGATCTGATGGCACTAGGAGTGGATTCCCAGCAATGCGGGACTTTGTTCAAAGAGTAGTGGAGACACTCGGTGTGGATGAGAACAAAGATCGCGTGGCTGTGGTCCAGTACAGTAGAGATCCAGCCGCCCAATTCTATCTGAACACATACACAACAAAAGGAGAGATTCTCAACACTGTACAAGGTCTGAGACACAAAGGTGGGAGACCTCTCAACACTGGAGCAGCTCTCCAGTACGTGAGAGACAATGTCTTGACTGCCTCCTCCGGAAGTCGACGCACTGAAGGTGTTCCACAGTTACTGATTCTGCTGAGTGGTGGAAGGTCCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295475 lncRNA downstream 457 42290259 ~ 42297785 (-) False G259579
TU295457 lncRNA downstream 6142 42291363 ~ 42292100 (-) False G259576
TU295482 lncRNA downstream 15724 42279545 ~ 42282518 (-) True LOC110519979
TU295515 lncRNA downstream 28118 42269230 ~ 42270124 (-) True G259614
TU295501 lncRNA downstream 64561 42233442 ~ 42233681 (-) True G259600
TU295587 lncRNA upstream 127194 42433201 ~ 42433418 (-) True G259685
TU295594 lncRNA upstream 133273 42439280 ~ 42439506 (-) True G259691
TU295603 lncRNA upstream 141280 42447287 ~ 42447514 (-) True G259700
TU295683 lncRNA upstream 280277 42586284 ~ 42590360 (-) False G259779
TU295684 lncRNA upstream 280277 42586284 ~ 42590360 (-) True G259779
XM_036974106.1 mRNA downstream 6637 42243576 ~ 42291605 (-) False LOC110519979
XM_036964861.1 mRNA upstream 23632 42329639 ~ 42334795 (-) True LOC110519978
XM_036974111.1 mRNA upstream 28900 42334907 ~ 42339654 (-) False LOC118936375
XM_036974112.1 mRNA upstream 31473 42337480 ~ 42339654 (-) True LOC118936375
XM_021596918.2 mRNA upstream 33903 42339910 ~ 42364268 (-) True LOC110519982
XR_005039884.1 mRNA upstream 149117 42455124 ~ 42457706 (-) True LOC110520683
TU295474 other downstream 2462 42292227 ~ 42295780 (-) True G259579
TU295466 other downstream 5073 42285630 ~ 42293169 (-) False G259576
TU295453 other downstream 8206 42288992 ~ 42290036 (-) False G259576
TU295117 other downstream 530654 41763817 ~ 41767588 (-) True G259259
TU292362 other downstream 1962802 40335210 ~ 40335440 (-) True G256632
TU295450 other upstream 16732 42322739 ~ 42325778 (-) True G259576
TU297567 other upstream 1683517 43989524 ~ 44031505 (-) True G261580
TU299080 other upstream 2704165 45010172 ~ 45012249 (-) True G262993
TU299078 other upstream 2793333 45099340 ~ 45104263 (-) True LOC110520012
TU299385 other upstream 3230325 45536332 ~ 45537542 (-) True G263274