RNA id: XM_021596918.2


Basic Information

Item Value
RNA id XM_021596918.2
length 4056
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110519982
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42339910 ~ 42364268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGCAGAGCGATCGAGAGTGTGGCAGTCTGTCTCTGAGTGCTTTGTTTCATTGTGTGCCATTGTTCCCAATAACAGATTATCCTCCCCATCTCCACCTCGCTCATCTGCCTTCCTTCGGGAGGAGCTGGAGAAGCCAGCTGCACAGAGGGGAAATACCTGCAGGATAATGACCTAAAGGCCTTTGTCATTTTGCAGAATTTGTTTTACCAAAGACTGTGGAATAAAGATAGTTCAGCTCAGGGTGTTACTTTTGGTGTTGGGAAGAAGATGAGGAAACACCGGATGTTAGCGCTGTGCGCTCTTCTGGGCGTACTTTTTGCAGGACTGCTGCCCAAACTTGACGCTCAAGAGGAAGCACAAGAGTCAGCTGACCTTGTACTCTTAATTGACGGATCTGAGAATGTTGGAGCGGCCAACTTCCCCCGTGTGCGCGATTTGGCCATGAAAGTCATTGAGGGCCTTGATGTGGGCAGGGACACAATTCGGGTGGCCGTGGCTCTGTACAGCGCGGACCCCGAGGTTCAGTTCTTTCTAAATACCTATGAGAACAAAGCCGATGTCCTGGATGCAGTGAAGGCCATTCAGTTCACAGGCAACAATGAGGCTAACCTTGGAGCCGCCTTGGAGAAAGTCGCTGAGAGCCTGTTGAGTCCGGCATCAGGGGGCAGGGCAGAGGAGGGGGTGCCCCAAGCTCTGGTGGTTATCAGTGCTGGACCGTCCAATGACGATTTCAGTGCGGGTGACCGGGCTCTTAAGGCAGCAAGTGTTATCACGTTTGGCGTAGTGGTCGGCGGCACGGCCACCGCCGAGCTGGAGACTATCGCCACAGACAAGAGCTTTGTTCTGTCGGCCCCCGATTTCAGGGCAGTGGCAAGCATGGGTGACCAGCTGCTACCATACGTTAACGGGGTGGCCCAGGGTACCATTGTCGTTCTGAATGAATTCACAGAAGCCTTGGAAGTGGGAAAAAGGGACATCATTTTTCTCATTGACAGCACTATGGGTGCCACAACCATCAACTCTCTTCGTGAGTTTATCAAAAGGTTTGTTGACACCATGCCAATCGGACCGGACCAAGTGCAAGTAGGTGTGGCCCAGTTCAGCAACGCTGCCAGACTTGAGATAGACCTGAACTCATATGGATCCAAGGAGGACCTGAATGCGGCACTGGGAAGACTCAAGCCAAGACCGGGACAAGTGGTGAACATCGGGGTGGCCCTGGACTTTGTGAGGACCAACATGCTGAGGGGTGAAAAGGGGAGTCGTATTCAGCAGGGTGTGCCCCAGCTGGTGCTGTTGATGACCAGTAAACAGTccagtgacagtgtggggcaggCTGCTGAGGCTCTGCAGCGCATGGGGGTTCTGACCCTGGCCGCTGGCTCTAAGACTGCCAATGAGCAGGAGCTGAAGCAGATTGCCATTGATGAGAGTTTGGTGTTCATGCTGAAGGACTTCCGCATATTGCTTCGCAACCCAAGGAtgattgtctctctcctctccactctatcTGGGGTTGTGGTGACTGAGGAACCCACAGAGCCAGTGGTTGAAATTACAACAGTGCAGACCCAGCGAGTAGTCAGAGACATCGTCTTTATGGTGGATGGCTCTAGCTACATTGGGGGTGCCAATCTTCCATATGTGCGGGATTTCATTGTCGGCGTGGTAAACCTGCTGGACGTGCGGCCCGACAGGGTGCGCATTGGGCTTATGCAGTTTGCAGAGAACCCAAAGATCGAATTCTacctgaacacacacaaaacaaagcaAGATGTGCTGGCTAGAGTTGATCAGCTCAGGCTAATGGGAGGATCTGCTTTGAACACTGGAGCGGCTATGGATTATGCCCTTACCAACATGTTCCAGGCCTCGACTGGGTCACGTAAGAGGCAGGGTGTCCAACAGGTTCTTCTCCTGATCACTGGAGGCCCATCCCAGGATGAGGTTAAAAAGATTGCAGACAAAGTGGCTGTGGCGGGTGTACTGACCTTCACAGTCAGTGCCGGCCAGGCAGATGAGGCCTACTTGAAGACGGTCGCTTTCGTCCCAAACTTGGCTTACCATGAAAGCAGATTTTCTAGCCTACCAAGTGTTGTTGAACAGATCATGACTCCTTTGATTGCTGTGGTCGGTGACACCGACATCTCAGTAACAGACATCGAAATAACCAAGGAACCTGCAGTTGCTGGAGGCGAGAGGGATGTTGCATTCCTGATTGACGGCTCGGATAATGTCCGAGCAGATTTCCCCTACATCCGGGACTTTATCATCAAAGTCATTGAGCCTCTTGATATTGGACAAGATAGAGTACGGATTTCAGTTGTCCAACATAGTGAGAGGCCAGCTCCCAACTTCTACCTGAATACATATAAGGATAAGGCTGAAGTGTTAAGGGCTGTTAATGATCTAAGACTGGCCGGTGGAAGGAGTCTAAACACCGGAATGGCCTTGAAATTCATGAAGGACACTATCCTGTCTCCGGTTCATGGTAGCCGTGCGGCCCAAAATGTCCCCCAGTTTTTGATCGTTTTGACCGGAGGCAAGTCAAATGATAGTGTGAAGGAATCTGCTAGCGCTTTAAAGACCGATGGAGTGGTACCGTTTGGCGTTGGTGTCAAGGATGCAGACCCTAAGCAAATCGAGGCCATTTCTCACAACCCATCCTTTGCTTTCAATGTGAAGGAATTCAGCCAGCTCAATATGGTACAACAAAGGCTCAATAGCTATGTGAGCCTTCCCAAGGAAGAGCTGAAGGTCATTCTGGACCAAGCCTCGGTTCATGCTTATGCTATCTCAGTTCATACTGATGCTGTGAAAAGAGATATTGTATTCCTGCTGGATGGTTCTGATGGCACAAGGAGTGGATTCCCAGCAGTGCGAGATTTTATTCAAAGTATAGTGGGTAAACTAtctgtggaggagaacagagacagagttTCAGTGGTTCAGTACGCTGACAAACCAGAGGCCCATTTCTATCTAAACTCTCACAAAACAAAGGATGCCATTATTAATGCCATAAGTAAAATGAGGCACAAGGGTGGAAGGAGCCTAAACACTGGGGCAGCTCTCCAGTTTGTAAGACACCGTGTCTTTACAGCCTCCTCTGGCAGTAGACGACTGGAAGGTGTGCCCCAGATTCTGATCCTTTTGACTAGCAAGAAATCCAGAGATGATGTTAAGGGTCCTGCTGTAGCTCTTAAAGATCTGGAAATTGTGTCATTGGGGGTCGGAGTTGGGGACGCCAATGTCCGTGAATTGGAAATGATTTCCTTCCAACCTGGTTTCACATACCAGGTCACCGAGTTCTCTGAGCTGCCCACAATCCAGCCACAGCTTGTTGCTGCGCTTAAAAGCCTGTCGAAAGACACCGAAGAATCAGTAGCTCCTGGGATTCCTGATGTGACACCTGGGATTCCTGATTTAGTAGATGCTGCACAGAGAGACATAGTGTTCCTTTTGGATGGATCTGATGATACTAGGAGTGGATTTCCAGCCATGCTTGGCTTTGTTCAAAGAGTAGTGGAAAACGTCAATGTTGGAGAGAACAAAGATCGAGTTTCTGTGGTCCAGTACAGCCGAAATCCAGAGGCCCATTTCTTACTGAACACACATCCAGAAAAACAAAGTGTTCTACGTTCTATTCGAAGCCTGAAGCACAAAGGGGGTAGACCACTCAACACTGGGGCAGCCCTCCAATATGTAAAGGACAACGTCTTTACTTCCTCCTCTGGAAGCAGAGGCCAAGAAGGCATCCCTCAGATACTGATACTGCTGAGTGGTGGCAGATCTCAAGATGATGTTGGAGGTGCTGCTGTTGCTTTGAAACAGAACAGAATTGTACCATTCTGTATTGGTACAAGGAATGCAGACATATTAGAGCTCCAAATAATAGCTCGTTTCCCCTCCTATGCTCTTTCTGTCCCTTGGTTCGATGACCTTGAAAGTATTGAACAGCAGCTTTTGTCACTTGTAAAAAGGGTCCCTCGTCAGCCAAAAGTTTATCAACGAACTGTAGTAGGTAAGGAGTTATTTCTCTAACTCGCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295517 lncRNA downstream 25223 42297846 ~ 42314687 (-) False col6a3
TU295473 lncRNA downstream 37401 42290259 ~ 42302509 (-) False G259579
TU295475 lncRNA downstream 42125 42290259 ~ 42297785 (-) False G259579
TU295457 lncRNA downstream 47810 42291363 ~ 42292100 (-) False G259576
TU295482 lncRNA downstream 57392 42279545 ~ 42282518 (-) True LOC110519979
TU295587 lncRNA upstream 68933 42433201 ~ 42433418 (-) True G259685
TU295594 lncRNA upstream 75012 42439280 ~ 42439506 (-) True G259691
TU295603 lncRNA upstream 83019 42447287 ~ 42447514 (-) True G259700
TU295683 lncRNA upstream 222016 42586284 ~ 42590360 (-) False G259779
TU295684 lncRNA upstream 222016 42586284 ~ 42590360 (-) True G259779
XM_036974111.1 mRNA downstream 256 42334907 ~ 42339654 (-) False LOC118936375
XM_036974112.1 mRNA downstream 256 42337480 ~ 42339654 (-) True LOC118936375
XM_036964861.1 mRNA downstream 5115 42329639 ~ 42334795 (-) True LOC110519978
XM_036974104.1 mRNA downstream 10283 42291728 ~ 42329627 (-) False col6a3
XM_036974105.1 mRNA downstream 10283 42291728 ~ 42329627 (-) False col6a3
XR_005039884.1 mRNA upstream 90856 42455124 ~ 42457706 (-) True LOC110520683
XR_005045624.1 mRNA upstream 228098 42592366 ~ 42617176 (-) True LOC118955837
XM_036974130.1 mRNA upstream 582476 42946744 ~ 43004057 (-) True LOC110519987
XM_021596924.2 mRNA upstream 651432 43015700 ~ 43044965 (-) False LOC110519985
XM_036974133.1 mRNA upstream 651432 43015700 ~ 43044965 (-) False LOC110519985
TU295465 other downstream 11915 42288992 ~ 42327995 (-) False G259576
TU295461 other downstream 12730 42305328 ~ 42327180 (-) False G259576
TU295450 other downstream 14132 42322739 ~ 42325778 (-) True G259576
TU295472 other downstream 20525 42290259 ~ 42319385 (-) False G259579
TU295488 other downstream 24552 42295880 ~ 42315358 (-) False col6a3
TU297567 other upstream 1625256 43989524 ~ 44031505 (-) True G261580
TU299080 other upstream 2645904 45010172 ~ 45012249 (-) True G262993
TU299078 other upstream 2735072 45099340 ~ 45104263 (-) True LOC110520012
TU299385 other upstream 3172064 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 5234950 47599218 ~ 47599815 (-) True G265988

Expression Profile