RNA id: XM_036974133.1


Basic Information

Item Value
RNA id XM_036974133.1
length 4062
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110519985
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 43015700 ~ 43051414 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAGCAGAGTCACCTGAGCAGGAATCATAAGGATAGTTAATGTTTACAACAAAACCAGTTTGTTTAGATATGTGTTATCATCGCACACTGGACATGTATTACCGATGATCAAGCTATTGTATTTTCCTGCAAAGACGAGGAATGAACGACCACGACAAATAGAAGGAAACCTACTTAtcatctagctagctagTATGGTGCCTGTGAAGCCCCGTGTTGGTGTTCCTCTTTCCTGAACCGGTCTGCACAGCAACTCCTAGAGCCAACGTGCCTTTCCTGGGGTCGACCTGATTCCTGCCTGTTCTGAGTCAGAAAGTCCAAAACTCTGAAGAATCCTGTATTAGGATTTCCAGATGGTGTGGGTGTTCATCATGAACCGGATGGGTTCTCAGGGCAGCACGGTGGCCCAGCAGAGACGCATGGCCCTGGGGGTGGTCATCCTCCTGCTGGTGGACGTCATCTGGGTGGCTTCCTCTGAGCTCACCTCATACATATTCAAGCGGCAGGAGTACAACAAGCCCTTCTTCAGCACGTTCACCAAGACCTCCATGTTTGTGCTGTACCTGCTGGGGTTCCTGCTGTGGAGGCCATGGAGGCAGCAGTGCACGGGCAGTCTCCGGGGACGACACGCTGCCTTTTTTGCTGATGCCGAGGCCTACTTTACCCCCTGTATCAACGACACCAGTTTGAATGACCATACCCTAAGTGAACCCCTGTACGTTCCTGTGAAGTTTCAGGACCTTCCCACAGAACAGACAAACTGTGCCAATGGAGACTGTGATTCCACCTCTAAAAAACAGCGGGTGCGCTTCAGCAACATCATGGAGGTGCGCCAGCTCCCATCTACACAGGCCCTGGAAGCCAAGCTGTCCCGTATGTCCTTCCCCGCCGTCAAGGACCAGGAGTCCATGCTCCGCACAGTGGGCAAGCTCACCGTCACCGACGTGGCCAAGATCAGCTTCTTCTTCTGCTTTGTGTGGTTCCTAGCCAACCTCTCTTACCAAGAGGCCCTGTCTGACACTCCGGTTGCCATAGTGAACGTTCTGTCCTCCACTTCAGGTCTCTTCACCCTCATCCTGGCGGCCGTATTTCCCAGTAACAGCAGTGACCGCTTTACTCTGTCCAAGCTTTTAGCTGTGGCTCTGTGCATGGGAGGAGTGGCCCTGGTCAGTTTTTCCAGCATGGACAGCCCTGACGGGAAAGGTGCTACAGGCTCCCTGTGGTCGGTGGCTGGGGCTGCGCTGTACGCGGTCTACATCGTCATGATCAAGAGGAAGGTGGACCGGGAGGACAAGCTGGATATCCCTATGTTCTTTGGATTTGTGGGGTTGTTCAACCTGCTCCTCCTATGGCCAGGCTTCCTTGTGCTTCACTACACAGGCTTTGAGGCCTTTGAGCTGCCCAGCAAGCTAGTGTGGACCTACATCCTCATCAACGGCCTCATCGGCACTGTGCTCTCCGAGTTCCTCTGGCTCTGGGGCTgcttcctcacctcctccctcataGGCACTCTGGCCCTCAGCCTCACCATCCCACTGTCCATCATAGCAGACATATGCATGCAGAAGGTGAGTTTCTCCTGGCTGTTTTTCGCTGGAGCGGTTCCcgtcttcctctccttcttcatCGCCACTCTGTTATGCCACTACAACAACTGGGACCCCGTCATGGTGGGGCTACGAAGAGTGTTTGCCTTCATATGCCGCTCGAAACATCGGATTCAAAGATTGCCAGAGGACAGTGAACAGTGTGAAAGCCTTATTCCCTTACACACTGTCTCCCATGACAATGAAAGCTTCTGCTCGTGATCCACCAGCCAGTCACAGGATCGTGAATACAGTGCGGAGCGGCATGCTGAAGTGACAATCTTGAAGCAACCAATCAGAGACTTTGAACTACGTCCAGTGCCTCTTATTCAAACGATTTATTCTCTGCAGTGTGGAGTTGACGTTCCATCTCTACAAGATGAACTCTTTTTACTTTGTACAGTGTTGATGCGACTCGTCGTTGACTGAGATTGTGTGTTTTGCTGTGTTGGATGTGTAAAAAGAAAAACTTGATGGTACTGAAGGTGCCGGCCTTTTATCAATGATTCATTATGGCCACTTCAATTGGTACACGTTTAAATAAAGGGACAGAGTGGTTTCATAAGGAGAAGAGCAAGGTTGTTATTCCAGCGGCAGCAATTTCTAACAATTAAAGGGTCGCTGCTTGTTTACAGGAGTAGGTTTGGGAGCAGGCTAAATTAATTATCGTTAATGTAGAAATAGTATGGGTGGAACAAGTTGGTCATGGATTTGACTTACACATCTGATGTAGAGATCTGGGCGTATTCACAAATGGTCACAGAGTTAAAGGAttagttttgccttttagatcataatgaataaggaTGTATCGACAGGGAGGACCTGTCCCTTGATCAGCACTCTGAGACACAGAGTAGCATTTCCTGTGAACAAGCAGTCTCAGATAAGGAGATGGCACTACAGCCAATGAACTACCGCATTTGATTTCTCCCCCATATtctacatctctccatctctggccCCTGGCAGCCAGGTAATGCTGGATCATGAAGGCAAACTGTGATGAAGCCTTTTGTATGTGTTAGAATGGGAACTGACATTAACCCCTCGACTAAGCTAAGCTGCTCTACAGAAGTTAGAATGCTGTTGCCTTTCCAACCGAAAACAGTAACCATCTCAAAACAGGTGTAAATACTGTACTACGCCATGAAATTCGAATGATGTATTCTTACTTTCGTttgtattttgaaaaatgacTACTACAAAGACCCTCTGAGTATCTAGCCTTCATGTTCTCCGAAGAATTGTTTACTCCAATGTTTTTTGTTCTTCAAAGTCTTGACTGTTATGACACTAAAAAGGATTTAAGACAGACCAAGTACATGGATTTTCCAGAAGCACTATTTTTCATTCAATTAGATTCCCATAGTCTTAAAGAGAAAATGTTATTGCATCTGAGATTAGTCATAACACTACGGGGTGTGTTGCAGAGCCACGAATGGGGACCTGATTTGATTAAATATCTTTCACTTGTTGAAAACTGACAATTCTATGCTATAATAGTTTCTATGTCCAACAATTGTATTTTAGACACATTTTGTTTGATCAGCACATGAAATGCAAATCAATCACCCTCTCACCCTTATTCTATTGATGATTTTATTTGACTTAAACACATGTTTGATCAGTTAAAGTGAACTGTCTCTTCTGTAACCCTTGATGTACACCATGACAAAGGGCATGTTATCATGTTATTCCACCAGCTGTCAACCTGTGTACAGAACTTTATGGAGTGTTTGCCCAGCACCCATTGTGGAAGACATTTTATGACTTGAGCTAACTGCAGGAAGTAATAACTTGCCCTGTAAAGTGAAAAAAACTTCAGCCCCTCAAGTGCAGGTTTTACCTTTGTCCAACTCAGTTGTTACTttcacaatgtaaaaaaataaataagaatctACCCTAGCCAGTAGCTTTTATTACCATCAGCTATGATTCTTGCACAAAGGAAACCAGCTGTGAGATGTATTTGGATGTTTAATACATGTGGTTCCTGTAGCCTATTTTTACTTGCGAAAAACCCAGGCACTCTGGAACTATACATCCTATGAAAGTTGATCATTTGTTTCCTATCTAAACATTTATCAGATTTTCCCCCATATCATCCATGTTGAAGTCTCTTATTGATAGGCGAGGTGCCAGATACATAAGTGCATTGTATATATATAACGcttttcaaaaatgtatttttttcatcGGTTCTTACGAAATGTGCGTATATTGTAAGAAGGTTGTTTTTTCTTTCTCAGGTACTTTGGTGGAAGGATGACTTTTTCCTCTGTCCAATCAGATTTTGTTTTGGTAATTTCGTGTCCTTTATTAATGGGTCTCTTTTTTAAAAGATGTATACAGATTTATCTAAGTGTGATCATCGTAGTTTACCCTATCACAGGCTCTTTTAAGAGTCTTTGGTGAAATTGCGTAAGTCCTTTTTCCAATGTTATGCAGCACTATTAAAACTAAAGATTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295855 lncRNA downstream 120708 42830496 ~ 42894992 (-) True G259941
TU295875 lncRNA downstream 142531 42867849 ~ 42873169 (-) True G259959
TU295876 lncRNA downstream 146093 42868561 ~ 42869607 (-) True G259960
TU295870 lncRNA downstream 152583 42856319 ~ 42863117 (-) True G259954
TU295738 lncRNA downstream 274129 42666995 ~ 42741571 (-) False G259830
TU296716 lncRNA upstream 171976 43216941 ~ 43217190 (-) True G260762
TU296725 lncRNA upstream 181323 43226288 ~ 43226682 (-) True G260771
TU296730 lncRNA upstream 187068 43232033 ~ 43232277 (-) True G260776
TU296746 lncRNA upstream 205377 43250342 ~ 43250568 (-) True G260792
TU296871 lncRNA upstream 379389 43424354 ~ 43510022 (-) True G260914
XM_036974130.1 mRNA downstream 11643 42946744 ~ 43004057 (-) True LOC110519987
XR_005045624.1 mRNA downstream 398524 42592366 ~ 42617176 (-) True LOC118955837
XR_005039884.1 mRNA downstream 557994 42455124 ~ 42457706 (-) True LOC110520683
XM_021596918.2 mRNA downstream 651432 42339910 ~ 42364268 (-) True LOC110519982
XM_036974112.1 mRNA downstream 676046 42337480 ~ 42339654 (-) True LOC118936375
XM_021596933.2 mRNA upstream 476366 43521331 ~ 43626170 (-) True LOC110519993
XR_005045714.1 mRNA upstream 661916 43706881 ~ 43741802 (-) True LOC118956029
XM_021596939.2 mRNA upstream 1187034 44231999 ~ 44235888 (-) True LOC110519998
XR_005045723.1 mRNA upstream 1214204 44259169 ~ 44262998 (-) True LOC118956139
XM_021596941.2 mRNA upstream 1245861 44290826 ~ 44294046 (-) False LOC110519999
TU295465 other downstream 687705 42288992 ~ 42327995 (-) False G259576
TU295461 other downstream 688520 42305328 ~ 42327180 (-) False G259576
TU295450 other downstream 689922 42322739 ~ 42325778 (-) True G259576
TU295472 other downstream 696315 42290259 ~ 42319385 (-) False G259579
TU295488 other downstream 700342 42295880 ~ 42315358 (-) False col6a3
TU297567 other upstream 944559 43989524 ~ 44031505 (-) True G261580
TU299080 other upstream 1965207 45010172 ~ 45012249 (-) True G262993
TU299078 other upstream 2054375 45099340 ~ 45104263 (-) True LOC110520012
TU299385 other upstream 2491367 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 4554253 47599218 ~ 47599815 (-) True G265988

Expression Profile