RNA id: XM_021596934.2


Basic Information

Item Value
RNA id XM_021596934.2
length 2714
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110519994
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 43830961 ~ 43845629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttacagtcaggcaACAGTCTAGGCTACAGGGGTCCTGAATTCCACACGCGTGTGTGCGCTCAGCTGCAAGCATGGCAGATCTTCAGATGAGGCTTCTTCGgcagaaaatccagaaaagaaGCGAAAAGAACAAAGAGCGAAAGCTACTTAATAAACAGAAACAAGAGGAAGATAATGGTGACGCAAACAGACTTCCAGAGGAGCGTTGTGATGAAACGAGTCACGGGGCCACAGCAATTTCAAAGCCACAGAATGCCAAACCCACAAAGAAGCCACAAATACAGAAGAATGTGTCTGCAGAGGTGAACACAGAAGAAAAATCTGTCAAGATGAAAAGGAAGCTCAAAACTGCTGAATCGCCAGGTGTGAAAAAAGCCAAGAAGGATGAGGCAGATGATGAGgaggatatggaggaggagagggggttgaCTGTGACTGAGGAGGATGCTGATCAGGGCACAGACAAACCCACACAGCCTCTTGAAGGGGCagaggctggagaggaggaggaagatgatgatgatgacgacgaggaggatgaagagggaagTGAAGATGAGGCGgaaaagggggaaggagagaagtttggggatgatgatgaggaagatGGACCTGAGCTCCCAACTGGCTTGACAGGTGCGTTTGAGGACACATCGTTTGCCTCTTTAACCTCTCTGGTGAGCGAGAACACTCTAAAGGGTGTGAAGGAGATGGGCTTTGACCACATGACCGAGATCCAACACAAAAGCATCCGCCCCCTACTGGAGGGAAGGGATATCCTGGCTGCTGCTAAGACCGGCAGTGGTAAAACCCTGGCCTTCCTCATCCCCTCCATCGAGCTCATCTACAAACTCAAGTTCATGCCCAGGAACGGCACGGGCGTGGTGATCCTGTCCCCAACGCGCGAGTTGGCCATGCAGACGTATGGTGTGATGAAAGAGCTGATGACCCACCACGTGCACACCTTTGGCCTGATTATGGGCGGCAGCAACCGCACGGCCGAGGCCCAAAGGTTGGCCAACGGTGTCAACATCCTGGTGGCCACACCCGGCAGACTGCTGGACCACCTGcagAATACTGCTGGCTTCATGTATAAGAACCTCCAGTGTCTGATCATTGACGAAGCCGACCGTATCCTGGAGGTCGGCTTCGAAGAGGAACTGAAGCAGATCATCAAACTCCTGCCAAAGCGGAGGCAGACCATGCTGTTCTCGGCCACCCAGACCCGTAAGGTGGAGGACCTGGCCCGTATCTCCCTGAAGAAGGAGCCCCTCTACGTGGGCGTGGACGACAACAAGGACAACGCCACCGTGGATGGCCTTGAACAGGGCTATGTGGTGTGTCCGTCTGAGAAGCGCTTCATGCTACTCTTCACCTTCTTGAAGAAGAACCGTAAGAAGAAGCTGATGGTGTTCTTCTCCTCCTGCATGTCGGTCAAGTTCCACTACGAGCTGCTCAACTACATTGACCTGCCCGTCATGGCCATCCACGGGAAGCAAAAGCAGACGAAGCGTACCACCACCTTCTTTCAGTTCTGTAACGCTGACTCTGGCATCCTGTTGTGTACCGACGTGGCGGCCAGAGGCCTGGACATCCCCGAGGTGGACTGGATCGTACAGTATGACCCCCCAGATGACCCCAAGGAATACATCCACAGGGTCGGCAGAACAGCTCGTGGGATCAACGGCATAGGCCACGCCCTCCTGATCCTACGGCCAGAGGAGTTGGGCTTCCTGCGCTTCCTCAAACAGGCCAAGGTTCCTTTGAGTGAGTTTGAATTCTCTTGGGCGAAGATCTCCGATATCCAGGGTCAGCTGGGGAAATTGATTGAGAAGAACTACTACCTGCACAAGTCAGCCCAGGAGGCCTACAAGTCCTACGTGCGGGCGTACGACTCTCATTCACTCAAAGCGATCTACAGCGTCAACACGCTCAACCTCCCCATGGTGGCGCTCTCCTTTGGCTTCAAAGTGCCCCCCTACGTCGACCTCAACGTCCACAGCAAAGGAGGACTGAAGATGACGAAGAGGGGTGGGGGCGGCGGCTTCGGCTACCAGAAGGGCAAGGGTGCTCACAAAGCCAAGATCTTCAAGCACGTCAACAAAGGCAAGGGGGACAAGAGGCAATTCTCTCGCTAGCCTGCGGTCCTTGGGGGATATTACAAAATGGCTTCCTGACCTGGACTCACTTTCTGTCCAGAGACCAATCTATTAGCCTGTTACTGGGCATCGTGTCTCGCTCCCTATTTGTGTGTGAAAGACCAGTCTGTTGGGtctccactagttaccacagccacaaagtcattaaCCTCGCTTATTTATTTTCTTAACATCTGATtttaaatctaaccttaaccacactgctaaccttatgcctaacctttaAATTAAGACTAATAGCAAATGTTTGTATTCATTCATTTTTACAACATAGCCAATTTGACTTTGTTGCTGTGGTAACTAGTCTCTTTTATGGGGGCTCAATTGTTTTGCTCCAATGTCTCAGCCTGTCTTTCTCTGAACAGGTATTTTGTAGTGACAGGACTCTGTGGGCTCATACCGTTCTGAGGACAGCCCTTGCATTCCTTTCCTCACAGCAGATGTGGATTTTTACTGTAGATTCTCTTTGATATGAGTATGCAGCACTGTACATTGATTTGCATTGTTTTCCTCCTCTACTGgccgatttaaaaataaaaaatatacaccCACA

Function

GO: NA

KEGG:

id description
K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297187 lncRNA upstream 468 43830170 ~ 43830493 (+) True G261215
TU297185 lncRNA upstream 1554 43829183 ~ 43829407 (+) True G261213
TU297184 lncRNA upstream 1806 43828863 ~ 43829155 (+) True G261212
TU297179 lncRNA upstream 3305 43827208 ~ 43827656 (+) True G261207
TU297178 lncRNA upstream 4516 43826149 ~ 43826445 (+) True G261206
TU297241 lncRNA downstream 50211 43895840 ~ 43897118 (+) True G261268
TU297242 lncRNA downstream 51718 43897347 ~ 43897554 (+) True G261269
TU297245 lncRNA downstream 54038 43899667 ~ 43899875 (+) True G261272
TU297247 lncRNA downstream 55279 43900908 ~ 43901187 (+) True G261274
TU297250 lncRNA downstream 58873 43904502 ~ 43904875 (+) True G261277
XM_036974136.1 mRNA upstream 317074 43169785 ~ 43513887 (+) False LOC110519984
XM_036974137.1 mRNA upstream 317074 43305863 ~ 43513887 (+) True LOC110519984
XM_036974135.1 mRNA upstream 747201 43051602 ~ 43083760 (+) True LOC110519989
XM_021596932.2 mRNA upstream 886364 42895618 ~ 42944597 (+) True LOC110519992
XM_021596914.2 mRNA upstream 947639 42746657 ~ 42883322 (+) False LOC110519980
XM_021596937.2 mRNA downstream 11460 43857089 ~ 43875820 (+) False LOC110519995
XM_021596935.2 mRNA downstream 11641 43857270 ~ 43875820 (+) False LOC110519995
XM_021596936.2 mRNA downstream 12438 43858067 ~ 43875820 (+) True LOC110519995
XM_021596938.2 mRNA downstream 30635 43876264 ~ 43895648 (+) True LOC110519997
XR_005045715.1 mRNA downstream 97495 43943124 ~ 43986958 (+) True LOC118956122
TU292451 other upstream 3378781 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 3378781 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 4162873 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 4986405 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 5230095 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 406440 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 674790 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 1993292 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 2088490 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 2229855 46075484 ~ 46079425 (+) True G263733

Expression Profile