RNA id: XM_021596938.2


Basic Information

Item Value
RNA id XM_021596938.2
length 5967
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110519997
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 43876264 ~ 43895648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAATACAGTAAACAGCATTGCTATAAAAGGCTTACTGTGCAGTTCACCTTCCACCACCAAGATGAAGAACCTGGTGCGGGTTCTCTATCTGTACCTGATGTGCCTCTATAGCTGTCTGTGTCAGGAAGATGACCCACAGGACTTTATGCTTCTAGCAGGCCCTCTCACCAACCACTTGAGGATGGACTTGAGCACCAAACCCATTGATGCCTTTGACTGCAGTCATCCCCTTCCCTTGGGCTCCAGGGCCTACTTCCAGTATCTCCAGAGTCGGGGAGTAACTCATTTCAAAGTTCCCCTGTCCTGGGCTCAACTTTTGCCCACAGGTGACCCCAGCCAGCCCAGTCAGCCTGCATTGTCTTGCTACCGGAACTTCTTGGAACAGCTAGTGGAAGTAGGCCTCAAACCACTTGTTGTCTTGCATCGCTCTGCTTTACCAGAGGCCCTGAGATCCAGGTATGGGGGCTGGGAAAGCGCAGAGCTGCTAGATGTATTTCAGCAATATGCTGAATTTGTTTTTCTGGCGTATGGAGAACTGGCACACTCTTGGGTGACACTGAGCCACATCGAAGAGCTGCGGGATGAGGTGAATCTGCAGCTGAAACACGCTCTCCATGCCCACGCCGACGTGTACCACCTCTACCATCACCTGTTTCCTGGACAAGGCGGCCATGTGTCGATTGGCGTAAGGGCCAGTGATGTTTCCATCCTTTACCAAAGCGAGGCTGCCATTAAGGAGTCCCTAGATTTCCTGTCAGTGCAAATTGAGTACAACTGCACCTCTAAATCAAACCTGGCAGAGGAGCTGAGAAGATTACAGAAGGCCAATGGTCAGATACCCATTGTGATTTACAAGATGAATATCAAAGGCTGTTCCTTCAGTCAATTCCAGCCACTCGGTAACATCCTGCAAGTTCTGCGAAATGGGGACCTGCAAATTCTGGGATGTGACATGGTTGACTTGTTTGAGGAGCTGGATTTGGTGGACACTCTGAATAGTCTTTCAGATCACACTGGGGATGCACTGTCAGTAAACTACCAGAGAGTGTGGGATAAGTTTGGAACTCAGACCATTTCTGAGCGGGACATCTTCCTGAATGAGTCTTTTCCTGATGGCTTCCAGTGGGCCACTTCCAGTGAGTCCTTTAAAGTCGAGGGTGGCTGGTCTGAGCATGGGAAGGGTGAGACCATTTGGGACCGCTTTGGCCATGAGCACCAAGTCTTTGAGAATCAGACTGCAGACCTGGCTTGTGACAGTTACCATAAAGTCGACTATGACGTCTATCTTCTGAGAGGTCTACTTGTCAAAACCTACCAGTTCTCTATCTCCTGGGCCCGCGTTTTCCCCTCTGGCCACTGGGGGAGCCACTCTGAGAAAGGTGCGCTTTACTATGACAGCCTGATCAATGCGCTGATAGAGGCGGGTATAGAACCTGCTGTGACCCTGCACCACTGGGATCTTCCCCAGGCACTCCAGGACTATGGAGGCTGGACCAATGTTTCCATTGCAGAAGCCTTTAAAGACTATGCCGACTTCTGCTTCTTCAGGTTTGGAGATAGGGTTAGGACCTGGAACACTTTCAGTAGCCCCTGGGTGATTAGCCATGCTGGGTACGGTACCGGTCAGCATCCCCCTGGAATAAAGAACTATGTGGTTGCCTCCTACCAGgtgACTCACAACATGCTCAAGTCCCACGCTGAAGCATGGCATGTTTACAACGACAAGTACCGGAAGGACCAGGGAGGCAAAGTAGGCATTGCCCTGGACTCCAACTGGGCTGAGCCTCCAAGCTCCTCTTCCAAGCCTGAAGATGTAGTGGCTGCAGACCGCTACCTGCAGTTCATGCTGGGATGGTTCGCCCATCCCATTTTTGTGGATGGGGACTATCCACCCTTGCTAAAGTCTCAGATTGAGCAGAAAAGGCGGAATTGTTCCCTCTCTGTGCCTGCCATACTCCCGTTCTTCACTGCAGCAGAGAGTAAGCGAATTCGCGGAACGGCAGATTTCCTGGGGCTCAACCACTACACCTCTCGCCTGGTCAATGCCAGTGATGGTGGCTGCGTGCCTGGACCAGAGGGGGTGGGAGACTTCAAAGCTCATGTGGACCATGCCTGGCCTTCTACGGAGTCTGACTCGATACACTCTGCACCCTGGGGCCTCCGTAGGCTGCTCAACTATGTTTCTGCAGAGTATCTGAATGTCACTAAGGTGCCCGTCTACATAACTGGAAATGGAATGCCCACGGGGTACAGCGGGGACGCTATCAATGACACGGAGCGTACAGAGTACTTAAAGGGCTACATCAACGAAGCACTGAAAGCAATCCATCTGGATGGAGTGGACGTGCAGCGTTTCACTGTGCAGTCACTGATGGATGGGTTCGAGGGGCCAAAGGGCTACAGCCAAAGGTTTGGTTTGCACTATGTCAACTTTGAAGACCCTAACAGGCCCAGAACCCCAAAGCAGTCAGCCTATTTCTACTCTGATATTATCAAGAGAAATGGGTTTTCTGATACAAGAGAAAGAAGTCCACAACAAGAACCAAAGTTTCAAACCGTTGTGCGGCAACCCACTCTGCCCCCGTCCGAGGTTCCCTCCAGATCCAAGGTTGTCTGGGAGAAGTTCTCCAGTCAGTCCAATTTCCAGAGGAAGCTCTACCACTACGGCACCTTTCCAAAGGGCTTCCAATGGGGAGTGACGTCCTCAGCCTATCAAATAGAAGGTGGCTGGAATGTTGACGGAAAGGGTGCAAGTGTATGGGATACCTTCACCCACAAGCCTGGCAGTACTACCGAAGATGCCAATGGTGACATAGCCTGTGACAGTTACCACCGACTAGAGGAAGACCTGTACATGATAAGGGCCCTAAGGGTTAAGACCTACCGATTCTCCCTGTCCTGGTCCAGGATCTTTCCCGATGGTCGGCGCAATTCCTTGAACCAGAAGGGTGTTAACTACTACAACAGGCTCATTAACGGCCTACTAGCTTATAACATAACCCCCATGGTGACACTCTACCACTGGGACCTCCCTCAGGCCCTGCAGGACCTTGATGGCTGGGACAACATCCAGATGGTTGAGATCTTTAACGACTTCTGTGACTTCTGCTTTTCCACCTTTGGGGAGCGAGTAAAGTTTTGGTTGACCTTCAACCAACCCTATACAATTGCCTGGTCAGGATATGGTCTGGGGCAGATCCCACCAAATGTCAGGAAGCCTGGGGATGCACCATATAGAGTCGCTCATAACCTTCTAAAGGCACATGCCACGGTGTACCACAACTATGACAAGAAATACCGCAAATCCCAAGGCGGTCTGGTCTCCATCGCCCTCAACGCAGACTGGGCTGAGCCCAAAGATGTCAACAACCCCCGGGAAGTCATGGCAGCAGACCGTGCCCTGCAGTTTCAGCTTGGCTGGTTCGCTCACCCAATCTTCAAAACTGGTGATTACCCCGACGCCATGAAGTGGCAGGTGGGCAACAAGAGTGAGCTCCAAGGCCTGCCAGGTTCCAGGCTCTCCACGTTAACCAATGATGATAAGGCCTACATCAGAGGTACTGCTGATGTCTTCTGTCTAAATGCTTATACCACTAAGGTGATACGTCAAGTAACTGCCAGGCTTAGTCCTCAGTCCTATTATAACGACCAGGacattggagaggaggaggagggtgattCCCCCACAACTGCCATCAAAGGGCAGAGGGCTGTAGCATGGGGCTTACGGAGACTCCTCAACTGGATCAAGGAGGAGTACGGAGATCCAGAGATTTATGTCACAGAGAATGGAGTTCCAACGGCTTCAAAGACCACAGTGGATGACACTGACAGAATATTCTACTACAAAACCTACATTGACGAGGCTTTGAAAGCCCATGACCTGGATGGTGTGAAGGTGAGGGGTTACAGTGTCTCGTCTCTTATGGACTCTTTTGAGTGGCTCAATGGGTACACAGTGGGCTTTGGTCTCCACCATGTGGACTTTACTCACCCAAGCCGACCCAGGACGCCCAAACGTTCAGCACACTACTACTATCAAGTCGTGAGGGACAACGGTTTCCCTCAATCGGAGGATGGTACACCCATTTATGGAAACTTCCGTAAAGATTTCATCTGGAGCACAGCAACAGCATCTTACCAGATTGAGGGGGGCTGGAGAGCAGATGGAAAGGGCCTCAGTATCTGGGATAAGTTTGCTCACACTCCTCTTAGAGTGTTCAATGATGACACAGGAGATATTGCCTGTGATAGTTATCATaaggtggaggaggatgtggcTATGCTGAGGAGGCTGAAGGTGACCCACTACCGCTTCTCTATATCCTGGTCCAGGGTGCTCCCCGATGGCACCACCAAAAACATCAACGAGGCTGGCCTCAACTACTACCGTAGACTGGTTGACGCACTTCTCATTGCCAACATACAGCCTCATATTACCCTCTACCACTGGGACCTCCCTCAGGCTCTGCAGGATGTGGGGGGCTGGGAGAACGACAGCATCATTGACCGATTCAGAGAATATGCTGATTTTATCTTCACTCACCTTGGAGACAAAGTGAAGTTCTGGATCACCATCAATGAGCCTTACAATATTGCCAATATTGGCCACGGCTATGGAGCTGCCGCCCCAGGCATCAGCTTCAGACCTGGCACATTGCCCTACATAGTGGGCCACAACCTCATCAAAGCCCATGCCGAAGCCTGGCACCTGTACAACGATAACTACCGCACCAAGCAGGGAGGCATTATCTCCATCACCATCAACTCAGACTGGTCAGAGCCACGGAACCCCTACAAGCAGGAGGACGTAGAAGCTGCACGACGCGTTGTTCAGTTCTATATCGGCTGGTTTGCCCACCCTATATTCAATGGAGACTACAGTGATACAATGAAGACAATCATTCGAGAGAGGAGCCTAGCAGCAGGCCTATCTAAATCACGGCTTCCTGAGTTTTCCCCTGCAGAGATCCAGAGGGTCAAAGGTACATATGATTACTTTGggttcaaccactacacaactgTCCTGGCATTCCCTGTTGAGTATGGGAACCTACAGCATTACGATGCAGACAGGGGCGCTGGAACGATTGCTGATCGCACCTGGCTGGACTCTGGCTCTGGCTGGCTGAAGGTTTCCCCATTTGGATTCCGCAAGATCCTCAACTTCATCAAGGAGGAGTACGGCGACCCACCCATCATCATCACAGAGAATGGGATATCGGCACGAGGGCCAGTGGATCTGAACGATGTCCACAGGATTCACTACTATGAGAATTACATCAATCAGGTCCTCAAAGCATATTTGCTGGATGGGGTGGATATTCGAGGCTACACAGCCTGGTCTCTGATGGACAATCTAGAGTGGGCCACTGGCTTCTCAGAGAGATTCGGCCTGTTCTATGTGAACCGTTCTGACTCCAAACTTACACGAGTAGCCAAGAACTCTGTTGCCCGCTATGCCACCATCATCACCTGCAATGGATTCCCTGACCCCACTCTGGGGCCTCACGAGTGTTTGAATCCCGATCCCGAAGGAACGAGTGCACCCTCCACCACCTCGCCTATCTTATCAGTCGAGAACGTGAGCTTCCTCGGTATGGAGCTGTCATCGGGCAGTGCTGAGATAGCCCTCTACAGCGTCTTTGCTCTCTCCGTTACGGGTGTCCTCTCAGTCATCGCTGTAACCTATCTGTACCGGAAGTCAGACAGATCCTCTGTGGAATCTGTGAGGATGGAGGCACTCTGAACACATAAAGAGTGCGAGAAGGCTCTGCCCCATCCAACATAAATCTCTCATTGTCTCTGTTTTTTAAATAATCTGTCAATACTCTACCTGAAAAGTGCCTGTCTATTTGTGGTATAGGAAAATTTGTTGTAGCTTATATATCTGATGAATCATTAGTGTCTGCACCAAACGTTGCCTTCGCTTGTTATTTTAAGAAATAAAGGACTAACTTTTGAA

Function

GO: NA

KEGG:

id description
K01229 LCT; lactase-phlorizin hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297189 lncRNA upstream 32688 43840940 ~ 43843576 (+) True G261217
TU297187 lncRNA upstream 45771 43830170 ~ 43830493 (+) True G261215
TU297185 lncRNA upstream 46857 43829183 ~ 43829407 (+) True G261213
TU297184 lncRNA upstream 47109 43828863 ~ 43829155 (+) True G261212
TU297179 lncRNA upstream 48608 43827208 ~ 43827656 (+) True G261207
TU297241 lncRNA downstream 192 43895840 ~ 43897118 (+) True G261268
TU297242 lncRNA downstream 1699 43897347 ~ 43897554 (+) True G261269
TU297245 lncRNA downstream 4019 43899667 ~ 43899875 (+) True G261272
TU297247 lncRNA downstream 5260 43900908 ~ 43901187 (+) True G261274
TU297250 lncRNA downstream 8854 43904502 ~ 43904875 (+) True G261277
XM_021596937.2 mRNA upstream 444 43857089 ~ 43875820 (+) False LOC110519995
XM_021596935.2 mRNA upstream 444 43857270 ~ 43875820 (+) False LOC110519995
XM_021596936.2 mRNA upstream 444 43858067 ~ 43875820 (+) True LOC110519995
XM_021596934.2 mRNA upstream 30635 43830961 ~ 43845629 (+) True LOC110519994
XM_036974136.1 mRNA upstream 362377 43169785 ~ 43513887 (+) False LOC110519984
XR_005045715.1 mRNA downstream 47476 43943124 ~ 43986958 (+) True LOC118956122
XM_036974177.1 mRNA downstream 180174 44075822 ~ 44191656 (+) False LOC110504116
XM_036974162.1 mRNA downstream 180176 44075824 ~ 44208105 (+) False LOC110504116
XM_036974170.1 mRNA downstream 180176 44075824 ~ 44208105 (+) False LOC110504116
XM_021596952.2 mRNA downstream 574523 44470171 ~ 44475272 (+) False LOC110520002
TU292451 other upstream 3424084 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 3424084 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 4208176 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 5031708 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 5275398 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 356421 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 624771 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 1943273 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 2038471 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 2179836 46075484 ~ 46079425 (+) True G263733

Expression Profile