RNA id: XM_021596942.2


Basic Information

Item Value
RNA id XM_021596942.2
length 1326
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110519999
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44290826 ~ 44294051 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCGCCAGACATGGAAATCCGGGAACTATTTAATCCTCGAGATGTGTCACTGTGAGTGTCACACAGTCCAGAGATTACAGGTGACAGGTAGTGCACACCCGACGGTTCCCACAAGCACTTTATTTTGAACTAGGCACTTTTGAACTAGGCACCGATGTCTGAACAACAACTTATTTCGTGCAGCAGGCTACACGTTTTCTCCTGCCGGGTGAACACAGCTTGTTGAATCGAATTGAAAAGTAAGATTAAAAAAATGGAAGATATATTATTTGACTTGGATCAAGATGGCACTACAGACTTTGCCTTCTGGGGCCAGATGGACCCTAACTTCCAGTTCCAGGCCCAGTTGGACACTCTCCTCTTTGACTGCACCGCGGTCACGGGCCAGCTTTCGCCCTGGTCCTCTTTCGGTGGCCAGTCCATGTTCCCTGACGCACAGATGACCTTCACCGACCTGGACTCGCAGTCTCCCGGCCTTGGAGCCAGTGCTGAAGTGGACAGCTCCTCTGTGGACGAGCCCCACGAGATGAGCAAGCGCAGGCAGCGGCGGTTCGTGCCCCATCATCCGTACAAGATCCAGCGACACGCCGCTAACATccgggagaggaagaggatgctgaGTATCAATTCTGCGTTCGAAGAGCTAAGGTGCCACGTGCCAACATTTCCCTACGAGAAGCGCCTGTCTAAGATTGATACACTGAGATTGGCCATTGCCTACATTGCCCTCCTGAGAGAGATACTGATTTCCGGCTGCGACCCCAAGTCGTACGTGGACGAATGCATGAAGAATGGTTACAAGAATCAAACcaatgccatttggaacacaagcGATCTGACAGCCCGGCTCTCCTGGATAAAGTGGGATTAACTCAGGATGGAGCAACCCAAGGGATGGGAGACCGGGGCCAGACTTAAGCCCATGGGGATGGCATTTCTCACAGGGGACAGAAGCAGCCTGGCATGGGACTGAACGAACCTTGGTCAAACTATTTTTTCTGAGTGTAATACTGAAGCGCCGTGTGTTCATTTGAAACCATTAGCTGTTGTTCATTGTGTGTGACACCCACATTTTCCGTAAGTTAATTTAACCTAAttcatttatgtatttatttaatttgtttatttatttattaatcatcgaagaagaaaaaaatgttgttattattataattatttattaAACTGTTTTCATTTTGATGTGGCGAGCTGTTTAAACTGTATCTTTAATCAATTGACAATCATACATTATTTATTATGTTGTCAAATGGAACGTTTTGATATTCATGATACTTATTATGAATATATGTTGTTTTtgtagtgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297788 lncRNA downstream 38400 44252166 ~ 44252426 (-) True G261792
TU297777 lncRNA downstream 51260 44239337 ~ 44239566 (-) True G261781
TU297775 lncRNA downstream 54205 44236418 ~ 44236621 (-) True G261779
TU297701 lncRNA downstream 73511 44201848 ~ 44217315 (-) True G261711
TU297859 lncRNA upstream 24504 44318555 ~ 44318760 (-) True G261861
TU297861 lncRNA upstream 24891 44318942 ~ 44319180 (-) True G261863
TU297864 lncRNA upstream 26912 44320963 ~ 44321334 (-) True G261866
TU297865 lncRNA upstream 27392 44321443 ~ 44321750 (-) True G261867
TU297866 lncRNA upstream 27890 44321941 ~ 44322141 (-) True G261868
XR_005045723.1 mRNA downstream 27828 44259169 ~ 44262998 (-) True LOC118956139
XM_021596939.2 mRNA downstream 54938 44231999 ~ 44235888 (-) True LOC110519998
XR_005045714.1 mRNA downstream 549024 43706881 ~ 43741802 (-) True LOC118956029
XM_021596933.2 mRNA downstream 664656 43521331 ~ 43626170 (-) True LOC110519993
XM_036974134.1 mRNA downstream 1239412 43015700 ~ 43051414 (-) True LOC110519985
XM_021596945.2 mRNA upstream 131317 44425368 ~ 44468711 (-) False LOC110520000
XM_021596946.2 mRNA upstream 131317 44425368 ~ 44468711 (-) False LOC110520000
XM_021596947.2 mRNA upstream 131317 44425368 ~ 44468711 (-) False LOC110520000
XM_021596948.2 mRNA upstream 131317 44425368 ~ 44468711 (-) False LOC110520000
XM_021596949.2 mRNA upstream 131317 44425368 ~ 44468711 (-) False LOC110520000
TU297567 other downstream 259321 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 1963646 42305328 ~ 42327180 (-) False G259576
TU295450 other downstream 1965048 42322739 ~ 42325778 (-) True G259576
TU295485 other downstream 1984819 42298242 ~ 42306007 (-) True col6a3
TU295484 other downstream 1987181 42298242 ~ 42303645 (-) False col6a3
TU299080 other upstream 716121 45010172 ~ 45012249 (-) True G262993
TU299078 other upstream 805289 45099340 ~ 45104263 (-) True LOC110520012
TU299385 other upstream 1242281 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 3305167 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 3737996 48032047 ~ 48033302 (-) True LOC110505248

Expression Profile