RNA id: XM_021596956.2


Basic Information

Item Value
RNA id XM_021596956.2
length 3894
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC110520005
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44904034 ~ 44930884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagaggcagggggagctGGGTCTCCTATGTGTGATTGTTGAGGTTGGGTCTTATCCCCTTCTCTGAGGGCCTTCGACACTCCGTAGCACTTTCACAAAGGGAGAGCCATGGAGCTGAACTAACCATTCACCCAGAGCCACGGAAGGAGGGTGAGAGTCCGCCAGCCCAGCCCCAGGAGAGGAGCACCCAGTGGCAGCCACTCAACAGGGGATACAGGCAGCTCCGAGGTGCTGGCTCTCTTTATCTCCTTCCaggcaccaccaccacagcaccaAGGGGTTGGTTAATGAGTTGGAGGAGGCAGAGGGAGTGGCTGTACACAAGGGGCTGAAGTTCACCGAGACACAAGCAGCAGGTGGAGGGAGAGATTGTGAGAGAGAGCCTGACGCACTGACGCTGTcaaggagacacacacaccctccacctGACTGAGGTATCTTTTCTAAGCTGAATCTGGCACCATGCCACAGATGCAGGTCAAAACCCAAGTTGCAAAAGTCCTCAATAAAACCACACCAGGGCTGCAGATATGGAGAATAGAGGACATGGAGATGGTGCCCTTCTCTTCTAAAGCATATGGACAATTCTATGAAGGTGACAGCTATGTCGTTCTATACACCAATAAGATGCGTAGCTCGTTCACCTACGACCTCCACTATTGGCTGGGAAAGGCCACCTCCCATGACGAGCAGGGGGCGGCGGCCATCTACACCACTATGATGGACGAGCACCTGGGAGGCATGGCTGTGCAGCACCGTGAGGCACAGGGCTATGAGAGCGACACCTTTCGTGGATACTTCAAAAAGGGCATCATCTACAAGAGTGGCGGCGTGGCGTCTGGGATGAAGCAGGTGGAGACCAACACCTACAACATCTGCCGCCTGCTCCATGTCAAGGGAAGGAAGCATGTGGTGGCTGGAGAGGTGGACATGAGCTGGAGCAGCTTTAACAAGGGGGATGTGTTCCTGCTTGACCTGGGCAACCTCATCATCCAGTGGAACGGACCCAAGAGCAACCGTATGGAAAGACTCAAGGGAATGACTCTAGCCAAGGACATCCGTGACAGGGAAAGAGGGGGACGGGCGCAGGTTAGCGTGGTGGAAGCTGATGATGAGAAGTCTTCCGAGGAGGCCATGAAGCTGATGAAGCAGCACCTGGGAGAGACGAGACGAGACATCAGGGACAGCATCGTGTCTGATGACGTGGTCGACCAGAAGCTGAGGTCCAGCGTCAAGCTCTTCCATATCTCAGATGCCCAGGGGAACCTTGTGGTGCAGGAGGTAGCAGTGAAGCCTCTGTCTCAGGACCTGTTGAATCACGAGGATTGCTATCTGTTGGATCAAGGTGGTATAAGGATCTTTATCTGGAAAGGAAAGAAGGCTTCCAAGACAGAACGGTCCAAGTCTTTGGATAAAGCAGAAGCATACAAGAAGGCGAAGGGCTACCCTATCTCCACCTACGTCGAGACGGTGAATGATGGTGCCGAGTCTGCCGTGTTCAAGCAGCTGTTCCAGAGGTGGAGCGTGAAGGGTCAAACTGTGGGGATGGGGACCACAAACTGTCCAGGCAAAATTGCCAAGGTTGAGCAGATCAAGTTTGATGCTACTTCCATGCATGCAAGGCCTGACGTGGCTGCCCAGCAGAAAATGGTCGATGACGGAACAGGTGAAGCAGAGGTGTGGAGGTTAGAGGACAGTGAACTGGTGCCTGTGGACAGGAAGTGGTTGGGCCACTTCTATGGAGGCGACTGCTATCTCATCCTCTACAAATATGATGTCAGCAATAGGAGTCACTACATACTATACATATGGCAGGGTCGCCATGCAAGCACCGGTGAGCTGGCTGCCTCTGCTTTCCAAGCCGTGAACATCGACCAGCAGTACAACGGTGAGCCAGTTCAGGTCCGAGTGCCCATGGGGAAAGAACCACTCCACCTCATGGCCATATTCAAGGGCAAGATGGTGGTCTATGAGGAGGGGAGCTCCAGGGCCAACTCTGCACATGTCCAGCCGGCGGTTCGTCTCTTCCACATCCACGGCACCAACGAGTTCAACACCCGCGCCATCGAAGTGCCAGCACGCTCCTCGTCCCTCAACTCCAACGACGTCTTTGTGCTCAGCACTGACACTTGCTGCTATCTGTGGTACGGAAAGGGCTGTTGTGGTGATGAGCGAGAGATGGGCAAATCCCTGGCAGACATCATCTCCAGGAGGGAAAAACATGTAATCGCAGAGGGTCAGGAGACGGCTAACTTCTGGCTAAATCTGGGAGGCAAGACCCAGTATGCCAACAGCAAGAGGCTTCAGGAAGAGCACAACAACATCACCCCGCGTCTCTTCGAGTGCTCCAATCAGACAGGCCGCTTCCTGGCCATGGAGGTCACCAACTTTAACCAGGACGATCTGGACGAAGATGACATCATGCTGCTGGACATCTGGGATATGgtgTTCCTGTGGTTGGGCAAGGGAGCTAATCAAATAGAGAAGGAGAATGTGGTCCCCACGGCACATGAGTACCTGAGGACCCACCCAGGTGGTCGAAATGTGGACACCCCCATCGTGCTGGTCAAACAGGGCTTTGAGCCTCCCACCTTCACAGGCTGGTTCCACGCCTGGGACCCACACATGTGGAGTGGAGGGAAATCCTACCAGGAGTTGAAGGCTGAGCTTGGGGACGCCAGCGACTTCATCCAGATCACCGTGGACAGAAGCACATCCAACTCTACTCAAAAGAACTCCAAGAGCATTGGAGAACCACTGCTGTCCCCGACCGTTGGGGCCACCTTCCCTGCAGACAAGCTGTTGAACCGCCAGACAGAGGACCTGCCCGATGGGGTTGACCCCACCAAGAAGGAGGAGTATCTGTCCAATGCTGACTTTGCTCTGATCCTGGGTGTGTCCCGGGTAGAGTTCTACTCCATGCCCACCTGGAAGCAGCAGAATCTGAAGAAAGAGAAGGGTCTGTTCTAGGAGAAGAATATCTGCACCTCAGGTCTCATTTTGACAGCGTAAAATAGCAGCGTGCTGTCGTCAAATCACACGGTATCTCCTCAAATACTCTCTTGGGAATCTAGTTCATAGGGAGGTTGGAATGCAAGAACTATACATCTTAATTCTGTATCTTGAATTTGCACCGTTATTCGTGCATCCTTAAACTCCAAACATATTGCCCCTGCGTGGACTTTGTATCATTCCAAATTAGATCCACTAAAACAAAAGTATAGGGAGAATATCAGACATGGCGAACACTAGCACTGCTTTTTTGCGGTGTCAAAATTAGGCCCCTCGTGTTTTGTCATCTAGCCTTGCAATTCAATCATTCACACATTCTCAGATAACCAACAGTAAGTTGGTTATCAAATGACTGTGCcttaggcttttttttttttttctgaaatGTTGCTGTTGTAATTTAAACAATCAAGTTATGGAGAGGAAAAGTGTAGGGGATAGGAATAATTATATACGTTTTGTTATCTGAGATTTATCATAGGCACAATAAGCAGCACTTTTCCCCTGAATTGCTACTTGTGTCACCGAATTCTACCTGGATATATAATGTAGATGTCAAGCATTTAAGACTAAGCAGGAGATGATATTGGTTCTATACTTTATTTTCACAATGAGCCTTATTAACATTGAAAATGTGTCTAAAATGTTTCTTTGTAATGCCAATATTCAGAGGACCGCAAGGGCTTAGTTATATGTTGTAGTGCAGAAATATAAAGATGAGTTACTTCATATGCTTTATAATATAAATGTTTAGATCTAATGTATCAATGAAATTCAAGATTGTCAAATGGGGATAACTACTGCGCTATTTAGTTTTTGTCTTTATATGAAGACCCTTCAAATGCCATGCTGAATGGCAGTCAATAAAGATAATATTCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298275 lncRNA upstream 11975 44851379 ~ 44892059 (+) True G262259
TU298039 lncRNA upstream 387550 44516200 ~ 44516484 (+) True G262035
TU298032 lncRNA upstream 395943 44507752 ~ 44508091 (+) True G262028
TU298028 lncRNA upstream 403437 44500343 ~ 44500597 (+) True G262024
TU298020 lncRNA upstream 412052 44491656 ~ 44491982 (+) True G262016
TU298341 lncRNA downstream 27803 44958687 ~ 44959175 (+) True G262313
TU298803 lncRNA downstream 169155 45100039 ~ 45102438 (+) True G262735
TU298877 lncRNA downstream 267466 45198350 ~ 45198602 (+) True G262807
TU298884 lncRNA downstream 296289 45227173 ~ 45227384 (+) True G262814
TU298891 lncRNA downstream 311966 45242850 ~ 45243091 (+) True G262820
NM_001124435.1 mRNA upstream 358 44878660 ~ 44903676 (+) True cd18
XR_005051414.1 mRNA upstream 69469 44834511 ~ 44834565 (+) True LOC118964364
XM_021596952.2 mRNA upstream 428762 44470171 ~ 44475272 (+) False LOC110520002
XM_021596954.2 mRNA upstream 428762 44470245 ~ 44475272 (+) True LOC110520002
XM_036974162.1 mRNA upstream 695929 44075824 ~ 44208105 (+) False LOC110504116
XM_036974218.1 mRNA downstream 58224 44989108 ~ 45010624 (+) False LOC110520010
XM_036974217.1 mRNA downstream 59321 44990205 ~ 45010624 (+) False LOC110520010
XM_036974219.1 mRNA downstream 59321 44990205 ~ 45010624 (+) True LOC110520010
XM_021584346.2 mRNA downstream 97948 45028832 ~ 45033273 (+) False LOC110505238
XR_002470717.2 mRNA downstream 97948 45028832 ~ 45035346 (+) True LOC110505238
TU298041 other upstream 378626 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 651483 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 4451854 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 4451854 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 5235946 39659059 ~ 39668088 (+) True LOC110519960
TU299672 other downstream 908037 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 1003235 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 1144600 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 1253250 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 1900124 46831008 ~ 46832134 (+) False LOC110520046

Expression Profile