RNA id: XR_005045980.1


Basic Information

Item Value
RNA id XR_005045980.1
length 1384
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC118956426
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44938735 ~ 44940312 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagacccactccaatttgcataccgccccaacagatccacagatgatgcaatctctattgagAGAAATGgccctgtttgtttttttttttttaccagaaaaGGTAACTCATCCACCATGGCAGAAGAGGAAGTTCCAGACTGTTGTTTGGGAAACAATAACAAAGAGGCATGAGGATTGGGTGTTGAGGGACGGGACCACATTGTCCAAGTTCATCCCTCAGGACATCCCGTGCGTGGACGTGCTGTGCCAGTGTGATTTTTGAGCGCAAGCATCCAGTTGTGGAGATCGAGCCTGTGGATGGACAGATCAGTAGCTCATCAAATGTGATACAACAATGAATTTGTAAATATATCTGCACAGTATGTTTGTGTATGGTTCTCATGACTTAAGATTGGATGTTGAGGGACTACTTGTCACATTGTCCAAGGTGGGTTTCTGTTATGGTCAGAAAAATGTGTTTTCTGTCTAGATAAAAATGGTTTTACAGCCTTAAAAAAGATTCCCCCACTGACCAAATATCTCTTTGTTTACAAGTTCAACAGGAGTGCATCCCTCAGACCATCCTGTGCATGGACATCCTGTGTCAGTGGGATCCGAGCGCTGGCGTCCAGTTGTGGAGACTACAGCACATCGAGCCTGtgaacagacagCAGGTGCCGCTTCCAGTGAATTGGAGCTGACCTTGGACCTGGTGCCAGTGAGGATAGTCTTCACTGAGGCGTTAAGACCCTCCCTCTTGATATAAAAATCCTTTGACTTCACTGCCCCTTCAATGGTAAGGCCCCTTGCACCATAGGGACACTTGACCTCCACCGCTGTGGTGGCCACTAGACCATCTGGTGAGGCACCCAGGATCCCAGACCCCATGACTCCTGCACATCCATCCCTGTAGACATTTTGAATGCCTTGATGTCCTCTTCTTTGTTATCTGTGCCCCACTTTACAGACAACATCCCACCCAATGATAATCCACAGAATCTGCTTCGGAGacggttcagagagagagagagagagaaagagagagataaccaTACTGAAGATCCTCCTCTGTGGGGTCTTGGGACAGAGGGTCGTAGTCTTCGGTCGAGTACAGGTCCTCCACTTGCTGCACCTGGTTGGACATGGCTGGCTTCCTTCTCTTACATTCCACACCCATACGACCGATATTGTGAACCTCCAAAATAGGCTGCATGGCTACACTGATAAGCTCTATGGAGGCATTTGCATGTGGTAGAGAGAATCCCCTGGTCAACTATAGAGACCTGCCAAGAGGAAGGATGTTAAGTGCCACATGCCTTTCAATGCATGACTGTGAACACCTTGAAATGCATTAGTTGTAAGAAATGTGCTatataaataaagtttgatttgattgatgacaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298688 lncRNA downstream 30142 44908327 ~ 44908593 (-) True G262630
TU298634 lncRNA downstream 35066 44892408 ~ 44903669 (-) False G262585
TU298633 lncRNA downstream 35066 44899096 ~ 44903669 (-) True G262585
TU298643 lncRNA downstream 96530 44841973 ~ 44842205 (-) True G262592
TU298638 lncRNA downstream 101478 44836977 ~ 44837257 (-) True G262587
TU298725 lncRNA upstream 20067 44960379 ~ 44960586 (-) True G262667
TU298726 lncRNA upstream 20319 44960631 ~ 44960857 (-) True G262668
TU299076 lncRNA upstream 60230 45000542 ~ 45001544 (-) True G262989
TU299093 lncRNA upstream 94487 45034799 ~ 45035035 (-) True G263006
TU299098 lncRNA upstream 98939 45039251 ~ 45039528 (-) True G263011
XM_036974213.1 mRNA downstream 220257 44523710 ~ 44718478 (-) False LOC110520004
XM_036974214.1 mRNA downstream 220257 44523710 ~ 44718478 (-) False LOC110520004
XM_036974215.1 mRNA downstream 220257 44523710 ~ 44718478 (-) True LOC110520004
XM_036974216.1 mRNA downstream 352296 44523710 ~ 44586439 (-) False LOC110520004
XM_036974212.1 mRNA downstream 352495 44523710 ~ 44586240 (-) False LOC110520004
XM_021596960.2 mRNA upstream 1047 44941359 ~ 44957332 (-) False LOC110520006
XM_021596961.2 mRNA upstream 1047 44941359 ~ 44957343 (-) True LOC110520006
LOC110520007 mRNA upstream 4409 44944721 ~ 44947818 (-) True LOC110520007
XM_021596963.2 mRNA upstream 24100 44964412 ~ 44986253 (-) False LOC110520009
XM_021596962.2 mRNA upstream 24100 44964412 ~ 44986254 (-) True LOC110520009
TU297567 other downstream 907230 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 2611555 42305328 ~ 42327180 (-) False G259576
TU295450 other downstream 2612957 42322739 ~ 42325778 (-) True G259576
TU295485 other downstream 2632728 42298242 ~ 42306007 (-) True col6a3
TU295484 other downstream 2635090 42298242 ~ 42303645 (-) False col6a3
TU299080 other upstream 69860 45010172 ~ 45012249 (-) True G262993
TU299078 other upstream 159028 45099340 ~ 45104263 (-) True LOC110520012
TU299385 other upstream 596020 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 2658906 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 3091735 48032047 ~ 48033302 (-) True LOC110505248

Expression Profile