RNA id: XM_036974219.1


Basic Information

Item Value
RNA id XM_036974219.1
length 3448
RNA type mRNA
GC content 0.54
exon number 24
gene id LOC110520010
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44989108 ~ 45010624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACATTTTCACATTCCCGCCATCATCGAGTACGGTAGGAAAACgtcgtgtgtgtgtggaccacacTGTCAACAATATAATATTGGGACCACCGAATGCCGGCAAAAAACAATTTACTACTCCCTTAGGACTTATATagagatatatttttttttatattttaaaagTTTCGGTTCAGGGATATTTCATTCGGGTTATTTTGGAGAGCACCACCCTGACAGTCACCAATGGCAGTTGCAGTGCCCAAACTCTCCAGTGGTGCTGTTGTCAAAATCCGCTACAACAGCATAGATGTGGGCACCACTCGATGGAAGGAGGGGACCTTTGAGGTTCTTGagaaggataacaaagtcaaccTGTGCCTGAAGTTTAGTGCCGGTGGTGCAGCCAAAAGTTTCCAGCTCAACCATAATGTGAATAATGTCGTGATGCAGCCCATACACACTATGAGACGAATTGTGGTGACTCTGAAGGATGACAGCATAGTCACCCTTGAGAGAGTTCCCCCTGTTGTGGCTGAGAAAATGAAAGAATACCTTGAAAAGCTGAAGCATGGAAAATCAACCGTTCTAAAGACCTCCCAGGGAAGTGCCAGCTTTGGTGTGCTCGGGAATCGATCCGTAAAAAATGAGACCAGTCCGCATGGAGAACGACAGACAACACCCAGGCGACCCATTGTGGACAACAGGGAGGAGACGACGACCCGCAAGCCCCTGGGTAGCCCCAGCAGAGTGACCTCCACACCTGCCCGCAGTGGGCTGTCTGAGAACAGGAATGAGAAGAGGAAGAGACTCCACATCTTTGACTGTGACTTGACTGAGGACTACCCCAAGGAGAATGACTCATCCAGCAACAACAAGGCCACGTCGGACCCCTCCAGGAAATTTCTGCTGAGCTGCAAAGACAAGCTGAAACAGGCGGAGGAGAAGCGTAGCTCAGTTTCACTGGTCCAGGCACCACTTCAGCCCACGTCATTCTACGGCAGCCGATCGGCGACCAAAGACTACTCCGCGAGTCAATCCTTTCTAGACAGGCCATCCACTACATCCCAGACCACCTCGGCTAAGAGAAGTCTCATGTTACCCAATCACTCAACCCCCTTAAAGAAAGTGCGCCCCACTCTGGACTACGGTGGCTGGAACAAGCCGAGACCGTCCACTctggcccagccccagcctccactGCAAGGATTCTCCAACCTGGGCAACACGTGTTACATGAACGCCATCCTCCAGTCTCTTTTCAGCCTGCCATCATTCTCCAATGATCTGCTGAAGCAGGGAATCCCATGGAAGAAGGTCCCAGCCAACGCCCTGCTCAGACGCTTTGCCCACTTGCTGGCCAAGAAGGACATCTCGTGCCCCGAGGTGAAGAAAGACCTGCTGAGGAGAGTGAAGAGTGCCATCTCCTCCACCGCCGAGCGCTTCTCCGGATACATGCAGAACGATGCCCATGAGTTTCTGAGCCAGTGCATGGACCAACTGAAGGAGGATGTGGAGAAAATGAACAAGAGCTGGAAAAGCGAGTCGGCAGCGGCCGCGTGGGATGAGCCTCCCCAGCAGGCGGCCGCAGCCCGGCCCGGGGAGGAAGCGGACACCTCGCGCATCTACACCTGTCCTGTGGTGGTTAACATGGAGTTTGAGGTGCAGCACACCATCACCTGCAAAGACTGTGGCGAGGTGGTGACCAAGCGGGAGCAGTTCAACGACCTGTCCATTGACCTGCCTCGCAGGAAGAAGACCATCCCTCTCCGGTCCATCCAGGACTCTCTGGACCTCTTCTTCAGGATCGAGGAAATCGAGTATTCGTGTGAGAAGTGCAGCGGGAAAGTGGCGACGGTGACTCATAAATTCAGCCGACTCCCCAGAGTTCTGATTCTGCACCTGAAGCGCTACAGCTTCAACGCCCAGCTGTCACTGAACAGTAAGCTAGGCCAGCAGGTGATGATCCCCCGCTACCTCACGCTGCTGTCCCACTGCACGGACGCCACCCGCCCCCCACTCAGTCTGGGCTGGAGCGCAAACGCCGCCATgtCACGAACACTGAAGGCCTCCCAGTCGGTGAACTCCTCCTCACTACTTCGGAAATTGTCTCTGAAGGCAGGGGGCAGCTCCAGCACTATCCTGGTGGACTCTGACAGCGAGGAGGAGCTGAGCCGGAAGGTGGTGAGCCGCAAGCGCCGTCTCAGCGACTGTCTGCCCGACGACAGAGCAGATGAGGTCCAGCGAGGCGTCCACCACACAGACGCGTCAGACTTCAACAGCATCAACGATGAGGAAATGCTGGCGGCGGTGCTGGAGATGAGTCGCCAGGACGCTGGGCTCTCCTGCCACGCCCCTGAGGACGAGCCAACCGGCAGCCCTGACACGGGCTTCGGTGACGCTGACGCCCAGGAGATGAACTACCGCCCAGACCTGCTGGAGACGGACACTAAGCCGTCTGCAGacgtgCTGGACTCCCTGGACCTGACCATGGACGAGAACAAGGAGAACCAGACCCCCGAGGGGGTGCAGGGGGATCTGGACTGGGTGCAGCAGTATGGCCTggagcaggagagggaggagcaggAGCTGCAGCAAGCCCTGGCCCAGAGCCTGCAGGAGCATGAAGCCCaagagatgagggaggacgacGACCTGAAGAGAGCCACAGAGCTCAGCCTGCAAGAGTTCAACAATTCGTTGCCGGAGCTGCTGTGTTCAGACGAGGACTCTGGGAACGAAGAGGTGCTGGATATGGAGTACAGCGAAGCAGAGACCGAGGATCTGAAGAGAAATGCTGAGAGCGGAGACTTGGCCAACTCGTTCCGGCTGATCAGTGTAGTCAGTCACATCGGGAGCAGCTCCTCCTCTGGCCATTACATCAGCGACGTGTACGACATGAAGAAGCAGTCGTGGCTGACCTACAACGACCTGGATGTGTCGCGCACGCAAGAGGCCACGGTGCAGAGAGACCGCGACCGCAGCGGATACATCTTTTTCTACATGCACAAggatgtgtttgaGGAGCTGTCTGAGCTAGAAAGGACAGGGGCCAGTGGAGGAGCCTCTGAGGCAGGGAGGACTGTCCTGCAGCCCCTCTGAGCCACCAGTCTGTCATCAGTCACACACCAACCAACACACTGAGCTCTCCCCAACAGATGGGTCGGGTTTGGGATGAAGGAGAACCTTTCTCCAGTACTACTGATCACCATCCACATTTTTCTGTCTTCAGGCACTTTGTGcttttttaaaacaaaaaaacaggccATGGTAGCTTCTGTTGCGAAGGCAGGCTCAGACGTCAGCACACACAGCCAATTTCCTTCTCGCCAGGTCTGTTCAGAAATGAGAGACGGTGCTCTCAAAAGAAAGAAAATAGACTGTTCTTTGTTTATTAAACACAGAGATATTAGGCCTGAACTTTTCAGGCTTCTTTATTTAATTTTCTATgatttgttgttgtaata

Function

GO: NA

KEGG:

id description
K11850 USP26_29_37; ubiquitin carboxyl-terminal hydrolase 26/29/37

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298341 lncRNA upstream 31030 44958687 ~ 44959175 (+) True G262313
TU298275 lncRNA upstream 98146 44851379 ~ 44892059 (+) True G262259
TU298039 lncRNA upstream 473721 44516200 ~ 44516484 (+) True G262035
TU298032 lncRNA upstream 482114 44507752 ~ 44508091 (+) True G262028
TU298028 lncRNA upstream 489608 44500343 ~ 44500597 (+) True G262024
TU298803 lncRNA downstream 89415 45100039 ~ 45102438 (+) True G262735
TU298877 lncRNA downstream 187726 45198350 ~ 45198602 (+) True G262807
TU298884 lncRNA downstream 216549 45227173 ~ 45227384 (+) True G262814
TU298891 lncRNA downstream 232226 45242850 ~ 45243091 (+) True G262820
TU298898 lncRNA downstream 243573 45254197 ~ 45254448 (+) True G262827
XM_021596956.2 mRNA upstream 59321 44904034 ~ 44930884 (+) False LOC110520005
XM_021596959.2 mRNA upstream 59321 44904478 ~ 44930884 (+) False LOC110520005
XM_021596957.2 mRNA upstream 59321 44904512 ~ 44930884 (+) False LOC110520005
XM_021596958.2 mRNA upstream 59321 44908574 ~ 44930884 (+) True LOC110520005
NM_001124435.1 mRNA upstream 86529 44878660 ~ 44903676 (+) True cd18
XM_021584346.2 mRNA downstream 18208 45028832 ~ 45033273 (+) False LOC110505238
XR_002470717.2 mRNA downstream 18208 45028832 ~ 45035346 (+) True LOC110505238
XM_021596968.2 mRNA downstream 30413 45041037 ~ 45092075 (+) False hibch
XM_021596969.2 mRNA downstream 30413 45041037 ~ 45092075 (+) True hibch
NM_001124283.2 mRNA downstream 95155 45105779 ~ 45108587 (+) True LOC100135920
TU298041 other upstream 464797 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 737654 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 4538025 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 4538025 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 5322117 39659059 ~ 39668088 (+) True LOC110519960
TU299672 other downstream 828297 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 923495 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 1064860 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 1173510 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 1820384 46831008 ~ 46832134 (+) False LOC110520046

Expression Profile