RNA id: XR_002472923.2


Basic Information

Item Value
RNA id XR_002472923.2
length 3763
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110520012
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45099333 ~ 45104286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAGTTTACTAACTGCCTTCAGAACGTTGAGTCAAACAGGCAACACTTTCAACGATGATTTATGTAGAATCTCCAGTAGAATGATGGCAAGAAGAAGGTATAGTCCTCCATGTCCGACTATTCCAGGATGTGAGAGTTTAATTAAATCGATGTTTGTATTTAGTGGGATTACTGCACAATGTGGTATGGTGGAACATTGAATGTCCAGTTTGGTAACTTGGTGGAAATTTCGTGCTGAGAGAGAAACCTGACCAACGTGGTCGCTGCCTTCCAAGTTTCATGTTCAAGCCTTGGACGCATATTCGGCGGTTTGATAAGGAGACGGAGTAGACACAGTCCGAGAGGCGGCACGTTTGGTGATTTCGGTTCACAAACCGTGTGGATGTATGAGACTTCTTTATTGAAACGTGTCGTTCAAGATAAAACGATGCGTTTTCCTACGGGATGAATTTGATATTCATGGAGGGAAACGCATCCAGTCCTACTTTTCCAAGAGTCTTTTTGAAGGCAGGACTGAGGCAACACACACCAGGACAGATGGAGACTACAGCAAATAACAGCAGTGCTTTGTGCGTTCAACCCAGGGTCACGTGGTCTATTTATGAAGACTGAAAAGACTGAGGATACAAAACAACAAGATCATGGcaCAGGGGAAGATATAAGTAGGGCAGCATAGGAGCATGGCTGACTGTCTGGACTATTTCAGGGCAGCTCAGTTAAGACAAGAATCGGCTTCCTAGCCGTCGCTTCTTAACCAGGGGCCAAGCCCCCCTCCGGCACATTCCTCCTTCaccaccttctctctcccctcctctctgagATCAATGCTCCATGATTTATATAATGGGATGCGTCAAATCCAAGAAGAGCGATCCGATCCAGTACGCCAACTCGGTGAAGGCGGACGGCAATCCTGGGAAGTGGCAGGGCGAGAACGCGCTGCTGGTCCACTATGAGACGGGGTCCGTGGACGACTCTGCCCGGGTGGACCCCATTCTGCTGGAGTATGCCCAGCGGCTGTCCGAGGAGATAGTGGCCCGGGCCGTGCAGCAGTGGTTGGAGGTGGACAGCCGCTACATTGACATCCCCTACATTGAGTGTGATGTGCCAtgagggggatggggggagggcaTTGCCAGAGAGTGTTATTTCTGTTATGGGATTCACCTTGAACCTCTGGGGAAAAGAAGACTACTGGATGcccaacaaacagacagacagacagacagacatcactcTCCTTCAGGTTGAAACAATACACTACGAAGATCTACTAGCTGATGCAAGATGTTGATGCCATTCTATGGTCCAAAGCCATTTTTCTGTTTAATTCATACTTGGACAAAGACCTTGATTAATCCTCTCATTTTCAATCCAGACCATGTGCTTGTCTCCATCGTTAGCTAGATGATAAGAGTTCCGAGCTGGGGTGTGTGATATCTTTGTCTTGGGAGCCGATAAAGCAGAAGAGTATCATTGAATCCTGCTTTGAAAATGACCGGTTCTGCCCTTCAGTGAATATCTATCGTTTCCGCTTGACGCGTGCCATCCTTGCGGCCAAATAGCAGTTCCGATGTAGGAAGTTATTTATTAGCACCTCAAATGGCCAATGTTTTTCACTTGAGATTTTTTGCTAGAGTCAGCAGGTACAtgcctccctctccatctgtctgcccAGACAGAAGTTCCCAGTTCAGGGTTCTTGGATAATGGCATCCCAGGGGGCCTGTGGTCGACCAACAAAGGAGAGCTCATTATTCATCCTGCCCAACTACCCATTAAGCATGTACGACGACGAGCTGCAGCAACCAAGGACCTGACAACGGTCACTTTGACGAAATGATGCTCTACGAACATGGCCGTGGGAAGATGTTTTGGGTTGGGGGTGCTGATGAGTATTTTTGTCCACTCATATAGGAGTAATAAAGGCCAAGTTCACTAAGGATGTTTTTTTCGAtttatcagggggtgctgcagcaccctcagcatccctacttcctgcggctatgtTTAGGAATGTTTTACAGAGGTTCAGCACCCTCCCATTCTATGAATTTGAATGCCATTGACAATAGGACATCCCTGAGGGCTGGCTAAGTCCCCCATGCCTCGAGGAAATCAGGACACGAGGATGGATTGACACACTTTTACTGAGACTTGGCTTTTGTACACAAAACGAGTTCTGGGTTCACAAATACATTTTGCTTTCGCCAAAATGTCTTGGGCCAAGCACCCTGGTAATGAGGAACTGCTGCCATCCGCCCCATAGAATTTACAGCACAAATATGCAACTCTCCAAGGCCATGGTATTTTTATTGAGAGCAAATGGCTTCTTAAAATAGTACGATGCTATTTTAACAGGCCATAGGCACACATAAGCACAATGGagagttgagttgtttggaaaaGGAGAACAACTGTCAAAGTCCTTAATGAATGGTAGTACAAGCACAATACGCTTGATGGGTTTTCGTATGGCGTTTATAAGAGAGGTCATATCAGTGGGTTTTAGTCAGTCATGGCAGGTCAGTTCCTACCATACCACAACTGATGTTCAAGAAGCTTTAAATGGCGGATGAGTCAAGGCTGGGCAACATGGAACATTTCACAGAGCATTAAATCAGAGTGCCATTGTATACACACCACAAAGAACAAGTAGACATTATTTCACCGGCTAAGGAAGTTTGACCTGTGCATCTCAAGTAAGATTCGGCTGCTAAGTCATTAGGTATGCTCAGTAAAGGAAATGGTAGTGGTGTGCCTCAAATGCTACACCCAAAAATCCATTACAGTTAAAAGCAACAAATATATAACAGCATTTTCACTAATCTGGGTTGAAAGATGAATCTCTTGAACCCATTCAATTATGTAAACCAATTGAAAAGCTTAGCGGTGACAACTTCCCCCCCCCATACTGTATTCCTAAATCTAAGAACTGGACAGATCACAGATCACTGTTGTTACTGCCTCAGCTAATGTTTTAAACAATTTTACAGATCAAGCTGCAAAAAACACAATGaaatcaaacaaaaaaaaaatccatcaaGCTTGATTTTCACTCGGATGAATTGGTTGATACAAGTCGTTTTACTATGCAGGAGACGGCTAGCACTGCATGCCATATATCAAGCCCCTATCATTATCTCTGCCTTTTATTTTTtgcatctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagaattgtaccttgtcagctcagggatttgaacttgcaacctttcggttactagtccaacgctctaagcactaggctaccctgccgccccaagctACCCTGCCTTTGAAGCCATGTCGAACACAGAATTCAAATGCTTTGTATAATGATGGTCAATGTCGCAGTTCACAATGCTTACAGCTTGACATAAACAGGTATACCAGGTATACCAAAGTATGTACAAACGAGGTATACCTGGATTCCTTCCTTCTAAATATTTCAATGTCGGGAACAGTTACATCTTGTAACATCAGTCTTCCAGTCAAGCCTTCAGTTTGATtatgggcaaaaaaaaaaaagtatgttggGAGATCCTAATGCTTCTTTTCCCCCCAGCGTCTAAGGACTCATCTATATTTATATCATATACCATTTAACCTGCAGCACTGTACAGGTCTGTAAATAAATCAATGACAAAAAAATGTGACGACAATAAAGCTGAAATCTATGCCTTCTACCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299126 lncRNA downstream 20496 45078521 ~ 45078837 (-) True G263039
TU299099 lncRNA downstream 58794 45040218 ~ 45040539 (-) True G263012
TU299098 lncRNA downstream 59805 45039251 ~ 45039528 (-) True G263011
TU299093 lncRNA downstream 64298 45034799 ~ 45035035 (-) True G263006
TU299076 lncRNA downstream 97789 45000542 ~ 45001544 (-) True G262989
TU299206 lncRNA upstream 92717 45197003 ~ 45197346 (-) False LOC118956634
TU299210 lncRNA upstream 94933 45199219 ~ 45199584 (-) True G263110
TU299211 lncRNA upstream 95444 45199730 ~ 45199996 (-) False LOC118956634
TU299212 lncRNA upstream 95804 45200090 ~ 45200378 (-) True LOC118956634
TU299209 lncRNA upstream 109459 45213745 ~ 45214224 (-) True G263109
XM_021596962.2 mRNA downstream 113079 44964412 ~ 44986254 (-) True LOC110520009
XM_021596963.2 mRNA downstream 113080 44964412 ~ 44986253 (-) False LOC110520009
XM_021596961.2 mRNA downstream 141990 44941359 ~ 44957343 (-) True LOC110520006
XM_021596960.2 mRNA downstream 142001 44941359 ~ 44957332 (-) False LOC110520006
LOC110520007 mRNA downstream 151515 44944721 ~ 44947818 (-) True LOC110520007
LOC110504133 mRNA upstream 75078 45179364 ~ 45190120 (-) True LOC110504133
XR_005046065.1 mRNA upstream 92791 45197077 ~ 45200662 (-) False LOC118956634
XM_036974223.1 mRNA upstream 106659 45210945 ~ 45212683 (-) True LOC110520013
LOC110520016 mRNA upstream 123964 45228250 ~ 45235027 (-) True LOC110520016
XM_021596974.2 mRNA upstream 132214 45236500 ~ 45243387 (-) False si:ch211-136m16.8
TU299080 other downstream 87084 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1067828 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 2772153 42305328 ~ 42327180 (-) False G259576
TU295450 other downstream 2773555 42322739 ~ 42325778 (-) True G259576
TU295485 other downstream 2793326 42298242 ~ 42306007 (-) True col6a3
TU299385 other upstream 432046 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 2494932 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2927761 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 4391191 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 4398130 49502416 ~ 49502971 (-) True LOC118944672

Expression Profile