RNA id: XM_021596978.2


Basic Information

Item Value
RNA id XM_021596978.2
length 2618
RNA type mRNA
GC content 0.54
exon number 20
gene id LOC110520019
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45302405 ~ 45327280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACGTGTGTTTCAGATACGAAGGTTCATAGTTGAAATTCGGAAAGATGGTGGTGCACGCAGAGATCCGCATGGTTCACCGTGGTGGCAGCAAAATAAACTTCAGGGAGCCAGTTATTACACATGACTCCAGGTTCCTTTTGTGTGCCGCGGGGGAGTCCGTGAACGTGTACAGTACCAGCACAGAGGAATACGTCCATGATTTGCAGGGACACACTGACCTGGTGACAGGCGTTGTCCTCAACCCTTCAAACCATCTGCAGGTATACTCGTGTTCAGCAGATGGCACTGTCCGATTGTGGGACTTCACGGATGCCATCCTCATCAAGACCTTCATTATCGGGTACCCAATCTACTCCATTTACGTCTCGGAAAAACATGGAGGAGTTGTTTTTCTCGTCGTTCCCATGGCAAATTACAAAAGCTCCGAGCTGTTCCAGCTGGTGGCTGTTCATCTGCCCCACAGTGGGGACCAGGAAGTGGAAGCGCGAGAGCTCTCGGCCGTGCTCTGTGATGTCAGCCACCACCCTGGGGCTGCCTCCTTTGGCAGAGAGGGTGAATACATAGCTGCCGTCAAAGGTTTACAGCTCGAGGTATTTTTCTTCAAGAAGCAGAAGTCCTACAGGTTTTCCCTGAAGTCAGGGATGAAGAAAGGGGCCAAGAATGCCTTCACCTGCGTTTCGTGCCACCCTAAAGAGGACTGTATTGCCACAGGTCACGAAGATGGCAAGATTCGCATGTGGAGAAACTTCAACCAGAAGAAGGAGTACACATACTCCACCTTGCACTGGCACCACGGTGCTGTCAACACACTGTGCTTCACCCCAGAAGGCACTAATCTTCTGAGTGGGGGCATAGAATCTGTGCTGGTCCATTGGCATTACACACAGGAGAACCAGAAAGACTTCTTGCCGCGCCTGGGCGCCGCCATCACACACATCGCCGTGTCACCTGACGGTTCCTTGTTCTGCACCTCGCACTCGGACAACAAGATCACAATCATTCAGAGTTGTGTCAAAGTGTCGGCCGTCATCCAGGGGCTGGTTAAAGGCGATGGTGTGTGGACAAACCTAATCATTGACCCGCGCAGTAAAGCTTTGGTGCTTAATGGGAAACCAGGGCACCTGCAGTTCTACTCTCTCCACCACGACAAGCAACTCTACAACTTGGACATAGTACAGCAGGAGTACATCCATGAGGAGGGTCTGGACCAGTTTGAGGTGGTCAAAGCGGCATTCGACGCCCGCGGCGACTGGCTTGCTaccgtggaggagaggagaaaaaaaggcGCTGAGCTGGAGATCAATTTGAAGCTGTGGGCGTACGATGAGCTAACTCAGAGTTTTGTGCTGAACACCACAGTGACAGCTCCCCACGAGGACCGGATTACAGCCATGTTCTTCAGCCCCTCCCCAGAGACCACCATGCTGGTGACCACTAGCCTCGACGGCCACTTCAAAGCCTGGCTGCTGGCAGACCACTCAGACGCCAACGAGGGCTTCTGGGCATGTGACTTTGTGGGTGGGTATCATCTCCTGAAGCCCGGTTGCTGCTCCTTCTCGGCTGACGGCTCCCTTTTGTCCGTCGGCTTCCAGGAAGTGGTGACCGTGTGGAGCCCCGCTTCCTGGGAGCTACTCACCACTCTGTCCCAGCCCCCAGGGGCTATcagGGACCTTTGTTTTGGACGGTTAAGCTGTTCCAAGTACCTGTTGGGGGCCAGCACCAAGAACCAACTCTGCTGCTGGAACCTCCTCACCTGCTCACtggaGTGGAGTACCCCCATGGACGTAAGCCTGCTCCAGACCGACCCGCTGTCTGAGAACATAGCTGCCTTCTGCAGCCAATCTGGCAGCTCTGACTTGTTTGTGTTCAAGCCCAGCGAGCCACGGCCCCTCTACTCCCAAAAGGCTTTGTGCACGGGCAAGGTGCAGCATGCAGTCTTCGCGCCGCGCGACCAGATGCTGGAGAGCTGCGAGGAGCGTACCCAGTGGCTCAACAGATCCCAGCTCTACTTCTTGACCCAACACATGGATTTGTTGACTTTTAGCACCAAGACTGAAGAGGACAGACTGTTGGCATCCAGTAAACAGCTCATGGTAGACGACAGTGTTGCCGTGACGCCGTTCTACCTGTTGTTAGGGAAACACAGAGGGCAGCAACTGGAGAAGCAGGAAGCACTGACCAATCCCATGGCAGAAAGGACTCAGCTCCCACAGGGCTCCATTGCCATCAaggagctgcTGCACACCCCAGCCCACGTCCTGCCTTCAGCCTCGTTCCTCTGTGCCATGTTTGTCCGCTCCCTGCTCATCTCCAGCTCCTCTGCCAGAGAGGAAAAAGAACATGAAGaaggggaaatggagagagagaaagaggaagaggactcCGAAGGGGAAGCAGACCCCCGTCTGGGGGAATCGGCAACATGGGGCCATCCCGAGGAGTTTGGGGCACCAGCTCTCACCAAAGCCCAAGAGAGGGAACTGAGGAAAGTTAGAACATTTGACCACAGCTGGCTCAGCAGCCTACTGGACTGTTAAGCGTGAACaagcccaaacacacacacttttcacaAAGGCTGTATTTTCATATAATAAATATTTCTGTTTTCAAATGTG

Function

GO: NA

KEGG:

id description
K14552 NAN1, UTP17, WDR75; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299222 lncRNA downstream 5952 45294739 ~ 45296453 (-) True G263122
TU299234 lncRNA downstream 42206 45255713 ~ 45260199 (-) True G263133
TU299227 lncRNA downstream 53585 45244750 ~ 45248820 (-) True G263127
TU299226 lncRNA downstream 59316 45242808 ~ 45243089 (-) True si:ch211-136m16.8
TU299219 lncRNA downstream 77793 45224072 ~ 45224612 (-) True G263119
TU299406 lncRNA upstream 179966 45507246 ~ 45507568 (-) True G263293
TU299384 lncRNA upstream 204331 45531611 ~ 45570492 (-) True G263273
TU299448 lncRNA upstream 263979 45591259 ~ 45591483 (-) True G263332
TU299489 lncRNA upstream 295707 45622987 ~ 45623447 (-) True G263373
TU299767 lncRNA upstream 507026 45834306 ~ 45834950 (-) True G263640
XM_021596974.2 mRNA downstream 59018 45236500 ~ 45243387 (-) False si:ch211-136m16.8
LOC110520016 mRNA downstream 67378 45228250 ~ 45235027 (-) True LOC110520016
XM_036974223.1 mRNA downstream 89722 45210945 ~ 45212683 (-) True LOC110520013
XR_005046065.1 mRNA downstream 101743 45197077 ~ 45200662 (-) False LOC118956634
LOC110504133 mRNA downstream 112285 45179364 ~ 45190120 (-) True LOC110504133
XM_021596981.2 mRNA upstream 73005 45400285 ~ 45425844 (-) False LOC110520020
XM_021596979.2 mRNA upstream 73005 45400285 ~ 45432858 (-) False LOC110520020
XM_021596980.2 mRNA upstream 73005 45400285 ~ 45432858 (-) False LOC110520020
XM_036974227.1 mRNA upstream 73005 45400285 ~ 45432858 (-) False LOC110520020
XM_036974228.1 mRNA upstream 73005 45400285 ~ 45432858 (-) False LOC110520020
TU299078 other downstream 198142 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 290156 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1270900 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 2975225 42305328 ~ 42327180 (-) False G259576
TU299385 other upstream 209052 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 2271938 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2704767 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 4168197 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 4175136 49502416 ~ 49502971 (-) True LOC118944672

Expression Profile