RNA id: TCONS_00028909


Basic Information

Item Value
RNA id TCONS_00028909
length 529
lncRNA type retained_intron
GC content 0.42
exon number 3
gene id XLOC_014624
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 12121944 ~ 12145765 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGGAAACATCTTCATTAAAAATCTGGATAAGTCTATTGACAACAAAGCTCTTTATGACACCTTCTCAGCGTTTGGCAACATCTTGTCATGCAAGGTGGTTTGTGACGAGAATGGCTCAAAGGGCTACGGCTTTGTGCACTTTGAGACCCAGGAGGCTGCTGAAAGAGCCATTGAGAAAATGAACGGCATGTTGCTGAATGACAGAAAAGTGTTTGTCGGCCGCTTCAAGTCTCGCAAGGAGAGGGAGGCTGAGCTTGGTGCAAGAGCCAAAGAGTTTACCAACGTCTACATTAAAAACTTTGGAGAAGACATGGATGATGACAAACTTAAGGATATCTTCAGCAAATATGGCGAGTTATTTGCATAAGTCTCATGCATTAACTATTTTCATGgtttatacatttaaacaaaaaccttTCCTTGTTTTGTAAGGTAATGCCATGAGCATCCGTGTCATGACTGATGAAAATGGGAAATCCAGAGGCTTCGGGTTTGTGAGTTTTGAAAGGCATGAAGATGCCCAAAGG

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050308-1 Predicted to enable RNA binding activity. Predicted to be located in cytoplasm. Is expressed in several structures, including alar plate midbrain region; nervous system; notochord; pronephric duct; and yolk syncytial layer. Orthologous to human PABPC1 (poly(A) binding protein cytoplasmic 1).

Ensembl:

ensembl_id ENSDART00000136324

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030168 lncRNA downstream 907223 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028870 lncRNA downstream 1257961 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00028865 lncRNA downstream 1269992 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028866 lncRNA downstream 1274342 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028835 lncRNA downstream 1815829 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00028922 lncRNA upstream 259805 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00030169 lncRNA upstream 482187 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00030170 lncRNA upstream 828280 12967019 ~ 13008216 (-) False XLOC_014635
TCONS_00030171 lncRNA upstream 828280 12967019 ~ 13009415 (-) True XLOC_014635
TCONS_00030172 lncRNA upstream 1047214 13185953 ~ 13188728 (-) True XLOC_014636
TCONS_00028904 mRNA downstream 56208 12030832 ~ 12078583 (-) True XLOC_014622
TCONS_00028902 mRNA downstream 157008 11952309 ~ 11977783 (-) False XLOC_014621
TCONS_00028901 mRNA downstream 159627 11948559 ~ 11975164 (-) False XLOC_014621
TCONS_00028903 mRNA downstream 168776 11955335 ~ 11966015 (-) True XLOC_014621
TCONS_00028898 mRNA downstream 184357 11897631 ~ 11950434 (-) False XLOC_014621
TCONS_00028912 mRNA upstream 25689 12164428 ~ 12193622 (-) True XLOC_014627
TCONS_00028913 mRNA upstream 67419 12206158 ~ 12212694 (-) False XLOC_014628
TCONS_00028914 mRNA upstream 67419 12206158 ~ 12212796 (-) False XLOC_014628
TCONS_00028915 mRNA upstream 67616 12206355 ~ 12212772 (-) False XLOC_014628
TCONS_00028916 mRNA upstream 68082 12206821 ~ 12212692 (-) True XLOC_014628
TCONS_00028907 other downstream 3611 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028905 other downstream 88221 12046454 ~ 12046570 (-) True XLOC_014623
TCONS_00028897 other downstream 409160 11725496 ~ 11725631 (-) True XLOC_014620
TCONS_00028885 other downstream 941428 11193249 ~ 11193363 (-) True XLOC_014611
TCONS_00028867 other downstream 1274325 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028921 other upstream 247558 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028926 other upstream 494410 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028935 other upstream 1594429 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028954 other upstream 3036104 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028962 other upstream 3888680 16027419 ~ 16027490 (-) True XLOC_014658

Expression Profile

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