RNA id: XM_021596980.2


Basic Information

Item Value
RNA id XM_021596980.2
length 4026
RNA type mRNA
GC content 0.46
exon number 24
gene id LOC110520020
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45400285 ~ 45432858 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTCTCTACTGAATTTATGCAAAAGCTTAGCTGCGATAGGCTATACAGAATTAAAAAGCCTACCTAAATGTTCACATGTTTTCTGAAGCAAAGGGCTGGGGATGTTAGTGGAGGAACCTTTTCCCATCTATCTTGACTTCACCTTTTTGTACCGTTTTCAACGTTAATCAAGATGGCCCAGTGGTTCCAGCTGCAGAAAATAGACTCCAAGTACCTGGAGCAGTTGGACCAGCTGTATGATGATACTTTCCCCATGGAGATCCGCCAGTACCTCAGTGAGTGGATTGAGAGCCATGACTGGGACACGGCGGCAACCAGCGTTTCCCTGGCGACGGTCCGTTTCCATGACCTCTTGGGCCAGTTGGACAACCAGTACAGCCGCTTCGCCCTGGAGAACAACTTCCTGTTGCAACACAATGTACGCAAGATTAAACGCAAACTGCAGGACCACTTTCAGGAGGACCCTTTGCACATGGCCATGATTATATGTAAATGTCTGAAAGAGGAGAAGAAAATCCTGGCCTGTGCCTTAAAAAAAGAGGAAAACGTTCGGTCCACACAAAACAATGTGGTGTTGGAGAAACAGAAAGAGTTGGACAACAATGTCAAAGACCTGAGGAAGCAAGTACAGGATGTAGAGCAGGAAATGAAGTCACTGGAGGACCTACAGGATGAACATGACTTTAAGAAGAAGACCCTGCAGAGCCGAGTGGAACAAGAGGTGAATGGGATGACACAGTCACCGGTGGTACAGAAAGAGATCCGTGAAGAGGAGATGGTCATCAGAGAGATGTTCATCAAACTCAACATaaccagagagGTGGTGGTGCATCAGATAGCTTACATCCTGAACTTGGCCGAGCAGATCCAGTACACCCTGGTGACGGAGGAGATACCTGAGTGGAAGCACAGACAGCAGATTGCGTGTATCGGTGGTCCACCTAATGCCTGTCTAGATCAGCTACAAACCTGgttCACTGCGGTGGCAGAGGGCTTACAGCAGGTACGCCAGCAGCTGAAGAAACTTCAGGAGCTGGAACAGAAGTACACATACGAGAACGACCCCATCACTCAGGGCAAAAGCACTCTGGAGGAACGCGCTCTCGTCCTGTTCAAGACCCTCATTGTCAATTCTATCGTGGTGGAGAGACAGCCCTGTATGCCCACTCACCCCCAAAGACCTCTGGTGCTGAAGACTGGGGTGCAGTTCACTGTCAAAATCAGACTGCTGGTGAAGCTTCAGGAGTTGAACTACCAGTTCAAAGTCAAAGCTCTGTTTGACAAGGACGTGACTGAGAGGAATGCAGTGAGAGGGTTCCGGAAATTCAACATCTTTGGAACTAATACTAAAGTTATGAACATGGAGGAGTCCAATGGAAGCTTGGCAGCAGAATTCAGACACCTGCAACTAAAGGAGCAAAAGGCTACAGGCAACAGAACAAACGACgGTCCTCTCATAGTGACAGAGGAGCTCCATTCCATCAGCTTTGAGACACAACTCACTCAGCCAGGACTCCAGGTCAACCTGGAGACGATGTCCCTGCCCATTGTGGTCATCTCCAACATTAGCCAGCTGCCCAGCGCCTGGGCCTCTGTCATGTGGTACAACATGCTGACCAGTGAGTCCAAGAATCTGCTGTTCTTCCTGAGCCCGTCCCAGGCCACCTGGAGCCAGTTGTCGAAGGTGCTGAGTTGGCAGTTCTCCTCCGTAACCAAGCGAGGCCTCAACGACGAGCAGCTGAGCATGCTGGGAGACAAGCTCCTGGGTCGAGAGGCTGTAGGAAATCCTAATGGGCTCATCCCCTGGACCATGTTCTGCAAGAATGTGAACGAGAAGGGCTTTCCCTTCTGGCTGTGGATCGATGGAATCCTGGACCTGATCAAGAGTCACCTCCTGTGTTTGTGGAATGACGGGTGTATCATGGGCTTTGtcagtaaggagagagagaaggccctGCTGAAGGACAAGGAGCCTGGGACTTTCCTGCTGCGTTTCAGCGAGAGCAGCCGGGAGGGAGCCGTCACCTTTACCTGGGTGGAGCACTCcaatgacgATGTCCATTTCCACACGGTGGAGCCCTACACTAAGAAGAAGCTGTCCGCCATCTCTTTCCCTGACATCCTCCACAACTACAAGGTGATGGCTGCCGAGAACATCCCTGAGAACCCTCTGGTCTACCTCTACCCCAGGATCCCCAAAGACAGCGCCTTCGCACGCTACTACAGTCGCCCCACAGAAGCCGCTGAGCCAATGGAGTTGGCGAGTAAGCCTGATGCTGGCTACGTTAAGAGGGATCTTATCTATGTGTCTGATGCTGGCTACGTTAAGAGGGAGCTTATCTCTGTGTCTGAATTCCACTCCAGACTACAGGACACCATGATGCCCATGAGTGCTGAAGTGTACGGAGAGCTGACCAGGATTATTAACCCTGCTGAGATTGATACTGTGATGTGCGAAGCTTTCCCAAACTAACCTGCCCTCTTCAGGCAGCGCCCCTTGGAATACTTGTTACCCCTCTGCACCAAACTGATCTGAAGATGTTGATTAAATTGAAGAGATTTGTTGGGTTTCCTTTGTAAATACAACTAAAACTGTATACATATGTAGTCTGTCGATTTAATGTACATGCATGAGATTTTGGGGCTTCAAGTCCAGCTGTTTCTATTAAGGAATGTCATTCTGTGTGACAGGATAATATTTTGTGAATGCGTATGTAGTGTGAAATGGTTAAGCTGTTATAGcgtcaaaagtattgggacatttgacacatttgttgttgttttggctctgtactccagcaccatgggtttgaaatgatacaatgagaTTAAAGTGTAGTCTGTCAGCTTTTAATTTGAGGGTTTTTCATACATAGAgggaaccgtttagaaattacagctcTTTTTGCACATAGCCCCTtaattttaggggaccaaaagttaATGTGACAAATTCCCTTATGTGAATTTAAGTAGTCAAGTTTAGAATTTGGTCCCATAATCCGAGCACGCAATGATTCCAAGCTTGTGACTCCTCACACTTgtatgcatttgctgtttgttttggttgttcgataattttgtgcccaatagaaatgaatggtaaatgttTGGACTTCACTGTTTAATTTAAGGACAAAGAAGAGGGCTCACACATGCCTGAATagctttgatttatttaaccttgtttattaaaataaatatgtgtatatattcCACTGCCAGGAGCAATCGCACATCTGCACATCAACTATGCCCTAAAATATGAACAGAAAAGGACATCCGTGTTTAGCAGTACATTCAGAACTGTCTAGTTGGAACTTTAGACGGGTCTGCAACTACAGGTGACACCTGACTTGAACCATCTGTCCATATGACCTACAGGGGTTCAAACTCCGGTCTTCTGCAAGCCACAATATTGTGTTCGCcctctgagctaaagcctaggcagcTGACAAGTTCAGGTCACAGGCAAGGTTACCTTTCACTGAATCAACAATAGCAAAACCAATGTCTGATTTTGAGACCTTTCCCTGTATGTCACGGATACGACAGTGTTATGGAGGTGATTGATTGGAGGGTTCAGGTCTAGTGTTTCCCGGACTACTGGGAGTGGTGAAGGAGGTTGAGTTTCTGTAGCAACGTGTTCCGTTATCATTCTTTGGCTTTCATTTGAACATTTTTCTATACACAATGTCACCGTCTCAGACAGATCTGGGGAGTTGCTGAAAACCGGCCACGTTGCCTTACAGAGACCAACAAGTAGTGGTAGAGATGTTATGTACATAGAGGACAGGGCTTTCCAATCCACTTGATTTTCCATCTGTGTATTCGTTATCTGGATTAGAACGTTGCGTAAGGTTATTCTACATTGTGTCATTGAAGCTGTTCTTTATGCTACATCGGTCttatgggggaaaaaaatactaCCATTGTTGTTCATTTATAATTTGATCTATTGTACAGTATTGCTTCATGCGGTCTTAACATTCATGTTaacatcaaataaaaaaatgaaaacaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299222 lncRNA downstream 103832 45294739 ~ 45296453 (-) True G263122
TU299234 lncRNA downstream 140086 45255713 ~ 45260199 (-) True G263133
TU299227 lncRNA downstream 151465 45244750 ~ 45248820 (-) True G263127
TU299226 lncRNA downstream 157196 45242808 ~ 45243089 (-) True si:ch211-136m16.8
TU299219 lncRNA downstream 175673 45224072 ~ 45224612 (-) True G263119
TU299406 lncRNA upstream 74388 45507246 ~ 45507568 (-) True G263293
TU299384 lncRNA upstream 98753 45531611 ~ 45570492 (-) True G263273
TU299448 lncRNA upstream 158401 45591259 ~ 45591483 (-) True G263332
TU299489 lncRNA upstream 190129 45622987 ~ 45623447 (-) True G263373
TU299767 lncRNA upstream 401448 45834306 ~ 45834950 (-) True G263640
XM_021596977.2 mRNA downstream 73005 45302405 ~ 45327280 (-) False LOC110520019
XM_021596978.2 mRNA downstream 73005 45302405 ~ 45327280 (-) True LOC110520019
XM_021596974.2 mRNA downstream 156898 45236500 ~ 45243387 (-) False si:ch211-136m16.8
LOC110520016 mRNA downstream 165258 45228250 ~ 45235027 (-) True LOC110520016
XM_036974223.1 mRNA downstream 187602 45210945 ~ 45212683 (-) True LOC110520013
XM_036974232.1 mRNA upstream 2098 45434956 ~ 45462766 (-) False LOC110520023
XR_005046275.1 mRNA upstream 2098 45434956 ~ 45462766 (-) False LOC110520023
XM_036974233.1 mRNA upstream 2098 45434956 ~ 45462768 (-) False LOC110520023
XM_036974234.1 mRNA upstream 2098 45434956 ~ 45462768 (-) True LOC110520023
XM_021596993.2 mRNA upstream 106986 45539844 ~ 45548118 (-) False LOC110520026
TU299078 other downstream 296022 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 388036 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1368780 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 3073105 42305328 ~ 42327180 (-) False G259576
TU299385 other upstream 103474 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 2166360 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2599189 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 4062619 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 4069558 49502416 ~ 49502971 (-) True LOC118944672

Expression Profile