RNA id: XM_036974234.1


Basic Information

Item Value
RNA id XM_036974234.1
length 5058
RNA type mRNA
GC content 0.43
exon number 22
gene id LOC110520023
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45434956 ~ 45462768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gGGTTAAGATTAATGTTACACTTAGGAGTTAAAGGtgttaagggttaatgttaggtgAAGGGTTTTCTAAAAAtagttcaggttagggttagctaagtagttgcaaagtagctaaaaagtagtaagtagttgaaaagtcgctaaaatgctaaagttgtccttgATAAGATTTGAACtctcaacctttgggttgctagatatTTGTGTTTTACAACCACCCATCCACCTGTCTAACACATCATAAGAAACGggtttatgtacagaataatacgaaatgctctgagaccaagtTGCGTGGGAGGGAGATGACAAAACCTGTAAGGCAGGCCTGTTACATGACGATCAACGTAAAATAAGTATGTGGTCGGGAATTCACGAAGGCTTCAAGAGGAAACAACTGAAAAACATTCTCATGACTTGTGTACGGTGGATATTTATGTGATAGAGAGCACCGAGTTGAAAGACACAGAATGAGTCAATGGAAACAAATTCAACAGCTCGAGTTCAAATACCTGGAGCAGGTGGATTACCTTTATGATGACAACTTCCCTATGGGGATTCGGCAGGTGCTTTCTGACTGGATTGAAAGCCAGGActgGGATATGGCCGCACACCATGAGTCCATGGCGACAGTTCTCCTCAGCAATCTCCTGTCTCAGTTGGACAGGCAGTGTTCTCAGGAACAGAACTTCCTACAAAGACACAACCTGAAGAACATCAACAAGCAGTTACAGataaAATACAAAGCCTACCCTCTGCTCATGGCCGGGGTTATCTCCACTAGCCTCAGAGAGGAGCGTCGTATCATCGCCTCAGCCAACATACCGGAACAGGGCCCGTTGGAGAAGTCTGTACAGAATTCCGTGGCCTTCGAGAGACAGAAGAACATGGACAACAGGGTGGTCGTGATCAGGAGTAGTGTGCAGATGCTGGACCCGGCAGTGAAATGTCTAGAGGACATGCAAGATGACTTTGACTTACGCTTCAAAACTATCCAGTCTCGAGATCAGGCGGACAGGAACACAGAGCGGATGGAACAGGAAGTGGCCCGACTGCAGGAGATTCTCAACAACCTGGACTTTAGGAGGAAGGAGATCCTGTCTAAAATGAGTGACGTGATGAAAGAGATTGACGCTCTGATAGCCTCCCAGCTGAACCCAGAGCTGATGGAGTGGAAACGCAGGCAGCAGATCAACTGTATAGGTGGCCCACTGCTCACTGGACTGGACCAGCTCCAGAACTGgTTTACTCTGACGGCCCAGAGTCTGTTCCAGATGAAACGTCAGCTGGACAAACTGGGAGAACTTATCCTGAAGGTGACCTATGCGAGCGACCCCATCTCCTTGCAGAGACCGCAGCTGGAGGAGCAGGTCAAATACCTCATCGACCACCTCATCAAAAGCTCATTTGTGGTGGAGAAGCAGCCATGGATGCCAACCCACCCCCAGAAACCTCTCATCATCAAGACCGGGGTGCAGTTCACCACCAAAGTCAGATTGTTGGTCAAACTCCCAGAGGTGGATTATCAACTGAAAGTGAAGACGATATTTGACAAGCACCTCCCCCCTGGCAGAGTACATCGTCAGTTCTTCATCCTGACTTCCACCACCAAAGTAATGGACGTGGAGGAATCATCTAATGGCTGTCTATCTGTAGAGTTCAGACACTTGCTGAAAGAGAAGAAATATGTTAACGGTATAAAGGTGAACGAGGGTCCTCTCTCTGTGACGGAGGAGCTCCACTCCCTCAGCTTCGAGGCCCAGTTCAACATACAGGGCATTAACATCGACCTGGAGacctGCTCTTTTCCTCTGGTGGTCATCTCCAATGTTAGCCAGCTGACTGGAGGCTGGGCCTCCATCATGTGGTACAACATGCTGACTGACGAACCCAGGaacCCGGACTTCTTTGCCAGTCCTCTGCGGGCCAGTTGGGGCCAGCTCTCTGAAGTGCTGAGTTGGCAGTTCTCGACTTTCACTGGGCGGGGCCTCAACAGGGAGCAGCTGTGCATGCTGGGAGAGAAACTCATGGGTCAGCAAGCCTCTCACAATGAATGTCAAGTATCCTGGTCCAAATTCTGCAAGGAGAATATTCCTGGGAAGCCTTTCAGTTTTTGGATGTGGCTGGATTTCATCCTGGAGCTCATCAAGAAGCACCTGCTTCCCATCTGGAACGACAACTGCATCATGGGCTTTGTCagtaaggagacagagagggcctGTTTGAAGGACAAGGAGCCTGGGACATTCCTGCTGCGCTTCAGTGAGAGCCACCTGGGTGGGATCACTTTCACCTGGGTGAAGCAGTCCGACAGTGGAGAGGCTAAATTAATCTCAGTGGAGCCGTACACCAAATCACGCCTCAGCGCTCTCCCGTTCGCCAACATCATCCGGGACTACAAGGTCATCGCAGACGGAGAGGTCCCTGAGAACCCGCTCAAGTTCCTCTACCCCGGCATCCCCAAAGACGAGTCCTTCAGACGACATTACAACAGTCAGCAGAGCAAAGTCTTTCCATATATATCATCTACATGGATCCCCATCTCCACTTTGCAATGAGTTCTCCGTACTCCGAGTAACACAAGATGACCTGCAGAGTATGCCAAGTATACGACTCTACGACTTGTGTTCCACTGAGGGTCACTGGATGTGGCATTTTCTCTTACATCTGATCACAATATATTGCTCTTCTATCCAACTGCTAGTATTGTCTTTGAGCCCATTGTCATGAATACAAACATATAATGTTGTAAGTGTAAAGTAGATATTACATGCAGTGGTATATCACTTCTcataaaatatatgtatttaatTGTGTGTATTCTGAAATGTCTTGTATTATGTGGCACTAATGTTAGCCTGTTGTTGGACTATATGTCTTAAACTTCTCTATCACGAACCAAGGTTTGGACAAAGAATAAATGTTTATTATCCCATTCTTTTTCATTAGTTTAGCTACCAATTTGATATTTTTGCACTAAGCCCAAAAAAATCCCAAGGCCTCTCGAGTAGAAAAAGGGTTTAACTACATATGATTTCCCCTATTGTCTTTACTACTGAGTAGAATATACATACAGATAGCCATGATCAACAGTCAGAGGATGGATAAAATATTGTACTGGACAAAGCAATATTTTTTTCATCAGCTTTTCTCTCCTTGAATATGTGGAAAAGTAATTAGTTTTTATTAATTGACTAATGACTGCTTATCAGATTGTAACCCAGGGTTAGATTACTAATTTTGCTGTCTAAAATTCAACACGTAAACAAATTCCCAAGTAAGATTTTTGTTTTTTGTCATGCTCTTCAGAAGCACAACGTTTCCTCGTATGTTGAAATATTTCGTGAATGATTCAAATGCAGATGTGCCGATTCATATGTCAATACCCGATTCTCATTTTCTCTTGGCATTTATTTGATCTGCTACATTGTTGGCATCATGTGGCTACTGTACCTCCCTTCTATTGTAGTAAAATGGGAAAGCACCTTGGGCTGTCCATTTAGGTTACTGTTTTGCCTTGAAGGAAGAGGTTGCTTCCTTATTTCACTGATCAGCGGCGCTACAGTAGTTTCTGTCAAGTGTAAACACTAATTTACAGGCTTTATTCGCAAAATAGTGTAGCATGATGTGTTGTAGGCCTACTTTGGGTTTACGGCTTCTTCCAATGGTTTGTGGCACAGGTGGTTTATACACcgcaaaaaaatctaaactacCCTTTATCTGTCATTTAAACAGTGAAGTATGAGAACCCGGGGGATTATCATGAATTACACACGACGAAGGCTGTTCTCAAACGCCTGGATTAAACGGTtgccaacatacagtacatacatttgTTTGACCTTGACAATCAAACCCTTTTTTTCTATTTAGCCTGAGTCAGATGAATTCATGGGTACCTTTTTGTATGTCTGCGTGCAATGCTGAAGGTCGTTTATCAAGCCAATGCTAACGCCCAATGATTGAAAGTCTACAGAAGCAGCTAGCGTGCTAGAGTGAATAGTTTGGGCAAAAGCCAGTAGTTCAGAGATTCTGAAGTTGCTAGCCAAGCGGACTGGTGGTCCATtttaagcaacaacaaaaaaaggttgATATGCAGGCTGGCCAACTAAAGCtaacacacaatcacatcaagcagctgtgcatttttaatttgttttaccTTTTTCTATTTCCATTTCTTTGGATTTATCTCCATAATAATGATGATTtcgcctggctcagagaagctgtcagtcttgTCTGGACACATTAATACAACTGGTGAGTCTATTCCTGGATGCTATTaggttaaaaccacattccaaCAATGTATCTATTTCACAACCCACTACTGTTGTGAAATAACATAACTAATTTCTGCATAGGTCGGAGAGGCAGGCTTGCAAGGTTCAGAGTTGGAGGACTCATTGTGGATATGACCCAatttagcatggacattgccattgagggcttccaccattttaaagtagtcaactgagtTTCTTATGGGTTGGGAGCGATCAGCCAATGATCAGAGCATTGTCTTCAAGTTGGGTTAACTATGATTTTTAAATGTCTTTAAAATACTGTATATCACCACATTCTAGTGGCcacaagtcaatgacacaattTGGTTCAGGACTCCAGCACTGCAagtggcagtaaatcaccaataATAGCTGTATGCTTTTTTCAAACACAAAATAAGAAAATGTaatacttcaaaatggagatggcctcaatgacACTGTGCGTGCTGTCACAGATGCCATAGTACATTGTTCATTCAAATGGAATTGTTATTGTGAATAACTTGCGGCTATCAACCAACCAGCATCCAAGATCCAAATGTACAGTTTTATAATGACTGTAGCCTATAATGGGACAAAGGACATTCTGATATTGTAATTGATTGACTGTCTGCATTGTACCATAATCTTGGCATTAATGTTTTTTAATCATTATCTCTCTAGTAGGCCTATGTTCGATCTTGTAGGCCTCGTCCTAATATTTTAAatatttcttaactccattcttttacttttcgatttgtgtgtattgttgtgaattgtttga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299222 lncRNA downstream 138503 45294739 ~ 45296453 (-) True G263122
TU299234 lncRNA downstream 174757 45255713 ~ 45260199 (-) True G263133
TU299227 lncRNA downstream 186136 45244750 ~ 45248820 (-) True G263127
TU299226 lncRNA downstream 191867 45242808 ~ 45243089 (-) True si:ch211-136m16.8
TU299219 lncRNA downstream 210344 45224072 ~ 45224612 (-) True G263119
TU299406 lncRNA upstream 44478 45507246 ~ 45507568 (-) True G263293
TU299384 lncRNA upstream 68843 45531611 ~ 45570492 (-) True G263273
TU299448 lncRNA upstream 128491 45591259 ~ 45591483 (-) True G263332
TU299489 lncRNA upstream 160219 45622987 ~ 45623447 (-) True G263373
TU299767 lncRNA upstream 371538 45834306 ~ 45834950 (-) True G263640
XM_021596979.2 mRNA downstream 2098 45400285 ~ 45432858 (-) False LOC110520020
XM_021596993.2 mRNA upstream 77076 45539844 ~ 45548118 (-) False LOC110520026
XM_021596991.2 mRNA upstream 77076 45539844 ~ 45548120 (-) False LOC110520026
XM_021596992.2 mRNA upstream 77076 45539844 ~ 45548737 (-) False LOC110520026
XM_036974236.1 mRNA upstream 77076 45539844 ~ 45567046 (-) True LOC110520026
XM_021596995.2 mRNA upstream 117335 45580103 ~ 45587403 (-) False si:ch1073-416j23.1
TU299078 other downstream 330693 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 422707 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1403451 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 3107776 42305328 ~ 42327180 (-) False G259576
TU299385 other upstream 73564 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 2136450 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2569279 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 4032709 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 4039648 49502416 ~ 49502971 (-) True LOC118944672

Expression Profile