RNA id: NM_001124342.2



Basic Information


Item Value
RNA id NM_001124342.2
length 1660
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110520024
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45500138 ~ 45502139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGCGGAGATAACCTGCATCACTGCGTTGCCACGATGTCTACTTTTTACGAGGTCGAACACATATTTTTTGACAACACCAGCTATGAAGAATCAGGGGATTTTGACTTGGATTTGGGTTTCGAGGAGCCGTGCAACAGAGTCGGAGGTGATGATTTTCAAAGGATCTTCTTACCGACAGTTTATGGAATAATCTTTCTGCTTGGAATCGTCGGAAATGGACTGGTAGTAACAGTGATGGGCTACCAGAAAAAGGTCAAAACGATGACTGATAAATACAGGCTCCATCTTTCTGTGGCTGACCTCCTACTCGTCTTCACGCTACCTTTCTGGGCAGTGGATGCGGCCAGCAGTTGGTACTTTGGtggcttcctctgtaccactgtgCACGTGATCTACACCATCAACCTGTATAGCAGTGTTCTGATTCTGGCTTTCATCAGCGTGGACAGGTACCTGGCAGTGGTGCATGCCACCAACAGCCAAACCACCAGGAAGAGGAAGCTGCTTGCAGAGAGATGGATCTATGTGGCGGTATGGCTACCTGCTGCTGTTCTCACTGTGCCTGACATAGTGTTTGCCACAGCTCTGGATGGAGGCTCCAGAACCATCTGCCAGCGCATCTACCCCCAGAAGACCAGCTTCTACTGGATGGCTGGGTTCCGTTTCCAGCACATTCTGGTGGGCTTTGTCCTGCCTGGTTTGGTCATCCTCACCTGCTACTGCATCATCATTGCCAAGCTGTCCCAGGGAGCCAAGGGTCAAGTGTTGAAGAGGAAGGCTCTCAAGACCACCGTAATCCTCATCCTGTGCTTCTTCAGCTGCTGGCTGCCGTACTGTGTGGGGATCTTTCTGGACACCCTAATGTTGCTCAATGTGATCTCCCATAGCTGTGCCCTGGAGCAGAGTCTGCAGACCTGGCTCTTAATCACAGAGGCTCTGGCATACTTTCATTGCTGTCTCAACCCCATCCTTTATGCTTTCCTGGGCGTTAAGTTCAAGAAATCTGCCCGAGATGCACTGGCTGTCAGCAGTAGGTCAAGTCATAAAGTACTGACTAAAAAAAGAGGAGCCATTTCATCTGTATCCACTGAATCCGAGTCTTCAAGTGTCTTGTGCAGTTAGTCACCATCCTTTGACTTTTAAATCTCAGGTTGAAACTAAGCTTTCTTTTTCAGGGACAAACTACATTTTGTACAGTTTTGACACCAAAACAAAAAAGACGCTCTTTCTATTTGTAGTTgccacttacattttttttttgttgttcttgTCAAGAAAATAATTTTATGTACAAAGGAGATTTAATCTACAGGCAGAGCCTGATGTCCATTGACTGGTCAACTGTATATATCAATTCTGCTACAGACGCAATTCCTTGCGGACTATCATAGAAGATACATTGTTCTAATACGGGACATGTCATACTTCATCATGTCTGCTTAGGGATACTATTTGTTCGTTTAAAATATTTGTAGATAGTTGTTTGCCTTTTTTCCGTTCGCACTTAACTTGTGTGATTAGAAGTTATATTATTTATTGCTGTCGCTCACACTGAATGTTTGGTATAATTATTTCACTATTTTGTTATAAGTGTTTGTATCATTTCAATGTCAATGCCATTTTGTTCAAGTGTTCTAAAATAAAATGTGGATAAATGACA

Function


GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0042119 neutrophil activation biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016494 C-X-C chemokine receptor activity molecular_function

KEGG:

id description
K04189 CXCR4, CD184; C-X-C chemokine receptor type 4

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU298928 lncRNA upstream 11758 45400277 ~ 45488380 (+) True G262852
TU298957 lncRNA upstream 164772 45335127 ~ 45335366 (+) True G262875
TU298898 lncRNA upstream 245690 45254197 ~ 45254448 (+) True G262827
TU298891 lncRNA upstream 257047 45242850 ~ 45243091 (+) True G262820
TU298884 lncRNA upstream 272754 45227173 ~ 45227384 (+) True G262814
TU299447 lncRNA downstream 89114 45591253 ~ 45591539 (+) True G263331
TU299478 lncRNA downstream 114999 45617138 ~ 45617349 (+) True G263362
TU299488 lncRNA downstream 120859 45622998 ~ 45623306 (+) True G263372
TU299492 lncRNA downstream 122138 45624277 ~ 45624493 (+) True G263376
TU299515 lncRNA downstream 142054 45644193 ~ 45644394 (+) True G263399
XR_005046279.1 mRNA upstream 4158 45494309 ~ 45495980 (+) True LOC118956876
XM_021596982.2 mRNA upstream 100637 45340331 ~ 45399501 (+) False glsb
XM_021596983.2 mRNA upstream 101330 45340331 ~ 45398808 (+) False glsb
XM_021596984.2 mRNA upstream 101330 45340332 ~ 45398808 (+) False glsb
XM_021596985.2 mRNA upstream 101330 45340332 ~ 45398808 (+) True glsb
XM_021596990.2 mRNA downstream 7326 45509465 ~ 45539298 (+) True dars1
XM_021596994.2 mRNA downstream 47773 45549912 ~ 45561382 (+) True pnkd
XM_036974274.1 mRNA downstream 69511 45571650 ~ 45578326 (+) False LOC110520030
XM_021596996.2 mRNA downstream 69526 45571665 ~ 45580003 (+) False LOC110520030
XM_021596997.2 mRNA downstream 69526 45571665 ~ 45580003 (+) True LOC110520030
TU298041 other upstream 974730 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1247587 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 5047958 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 5047958 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 5832050 39659059 ~ 39668088 (+) True LOC110519960
TU299672 other downstream 336782 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 431980 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 573345 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 681995 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 1328869 46831008 ~ 46832134 (+) False LOC110520046

Expression Profile