RNA id: XM_021596990.2


Basic Information

Item Value
RNA id XM_021596990.2
length 2281
RNA type mRNA
GC content 0.50
exon number 18
gene id dars1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45509465 ~ 45539298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGTTTCAGCCCGGATTGAGAAACTATTTTTCTGTGCATCAGGGAAATAGGCCCGTCTTCTACCACCTATGAATGCTCTCTGAACAGATGACTCTGTCTCAGAAGTAACTGTCAAGAATCTACCATCTCAAAAGAATAATAACTGTCATGACTAAAGATGGAGTCCAAGGGGTCGTGGAGGAGGCGGACCAGGCCCCGTCGAAGAAAGGCCTGAAGAAACAGCAGAAGGAAGCGGAGAAAGCTGCTAAGAAGGCTGAGAAGCAGGCCAAACTGTCTGCTGACCAACAAAGCACAGATGACGATGATTTTGCCAAGGATCGGTACGGTGTCCCTCCGATGGTACAGTCCCAGCAGAAACTGGACAGAGGGTTGGTGCGTGTCCATGAGCTGACACCTGAGAAGGCAGGCCAGCTGATCTGGGTGCGTGCCCGGATTCACACCAGCAGAGCTAAAGGGAAGCAGTGCTTCTTGGTCCTGCGTCAGCAGCAGTTTAACGTGCAGGCCCTGGTCGCCGTGGGGGAGCGTGCCAGCAAGCAGATGGTCAAGTTTGCCGCCAACATCAACAAGGAGAGCATTGTGGACGTGGAGGCGGTGGTGAAGAAGGTGGAGCAGACGATCGAGAGCTGCTCTCAGCAGGATGTGGAGTTGCACATTGAGAGGATTTTTGTCGTCAGCCAGGCCGAGCCTCGTCTGCCCCTGCAACTGGAGGATTGCGTGAGGccggaaggagagggggatgagGATGGAAGAGCGACGGTCAACCAGGACACCAGATTGGACAACCGAGTCATTGATCTCAGGACAACGACCAGCCAGGCCATCTTCCGCCTGCAATCCGGAGTGTGCCAACTCTTTAGAGACACCCTGACCAACAAGGGCTTTGTGGAGATCCAGACCCCCAAAATCATATCAGCTGCCAGTGAGGGCGGGGCAAACGTCTTCACTGTGTCCTACTTCAAAACCAGCGCCTACCTGGCCCAGTCTCCCCAGCTCTACAAGCAGATGTGTATCTGTGCTGACTTTGACAAGGTGTTCTGTGTGGGACCAGTGTTCAGAGCAGAAGACTCCAACACCCATCGTCATCTGACAGAGTTTGTGGGCCTGGATATTGAGTTGGCGTTCAACTACCACTACCACGAAGTGATCGAGTCCATCACCGACACCATGGTTCAGATCTTTAAAGGACTCCGAGACAAgTTCCAGACAGAGATCCAGACAGTGGGGAAGCAGTACCCCAGCGAGCCATTCAAGTTCCTGGAGCCCACTCTGAGGCTGGAGTACTCGGAAGGTGTGGCCATGCTCCGGGAAGCCGGGGTGGAGATGGGAGACGAGGAGGACCTCAGCACTCCCAATGAGAAGTTGCTTGGTCGTCTGGTGAAAGAAAAATATGACACTGACTTCTACGTGCTGGACAAGTACCCCCTGGCAGTGAGGCCCTTCTACACCATGCCTGACCCCAACGACAAAAAATACTCCAACTCCTACGACATGttcatgagaggagaggagatcctCTCTGGagcccagaggatccacgatgcCCAGCTGCTCACTGAGAGGGCCATGCACCACAACATTGACCTGGAGAAGATCAAGTCCTATATTGACTCCTTCCGATACGGAGCTCCCCCACATGGAGGTGGTGGCATTGGACTCGAGAGAGTCTGCATGCTCTACCTGGGTCTTCATAATGTCCGCCAGACCTCCATGTTCCCCCGTGATCCCAAACGCCTGACCCCCTGAGCGGCCATCGATCGCCATTGGACACAGATGCAGGACATGGGGAAACTACATTTTAATCTCCAAACAcaccagacagaggagacatgAGTGGCGCAACACTGAAGTGCCACTGTGATTAACAAGAGAATAATAGATAACCAAGCCAGGCTACTACGGTTACCAGTATTCAGAAATAGAACCATAATATAAGGGATAAATAATTTGAAGACATTATAGAAGTGGAATATGATTTAGAGATGTAATAACTTCGGCTTAGCTTGAGTGCCTGTCTGTTTCTGCCGTCTTGccatgtttggcttgacaatgataATTGAGTAGGCAAACGTACAAACCGTTTCCAAGCTTCCCTAGGCTCACCAATGGGGATAATAAACCTGTGTTTTATGTCTAACACTTTATCAACTTTGATACCAGTCTTTGTCAGAGTACAGAGGTATGAATAATAAATAGTCTTGGTCTGGTGACATCATTTTTAATTATTGCAGCTGTTTTTAAAGTAATTGGAGGAAAAAATTAATAAAAGTACTTCCAAAAGTT

Function

GO:

id name namespace
GO:0006422 aspartyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004815 aspartate-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K22503 DARS1; aspartyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298928 lncRNA upstream 21085 45400277 ~ 45488380 (+) True G262852
TU298957 lncRNA upstream 174099 45335127 ~ 45335366 (+) True G262875
TU298898 lncRNA upstream 255017 45254197 ~ 45254448 (+) True G262827
TU298891 lncRNA upstream 266374 45242850 ~ 45243091 (+) True G262820
TU298884 lncRNA upstream 282081 45227173 ~ 45227384 (+) True G262814
TU299447 lncRNA downstream 51955 45591253 ~ 45591539 (+) True G263331
TU299478 lncRNA downstream 77840 45617138 ~ 45617349 (+) True G263362
TU299488 lncRNA downstream 83700 45622998 ~ 45623306 (+) True G263372
TU299492 lncRNA downstream 84979 45624277 ~ 45624493 (+) True G263376
TU299515 lncRNA downstream 104895 45644193 ~ 45644394 (+) True G263399
NM_001124342.2 mRNA upstream 7326 45500138 ~ 45502139 (+) True LOC110520024
XR_005046279.1 mRNA upstream 13485 45494309 ~ 45495980 (+) True LOC118956876
XM_021596982.2 mRNA upstream 109964 45340331 ~ 45399501 (+) False glsb
XM_021596983.2 mRNA upstream 110657 45340331 ~ 45398808 (+) False glsb
XM_021596994.2 mRNA downstream 10614 45549912 ~ 45561382 (+) True pnkd
XM_036974274.1 mRNA downstream 32352 45571650 ~ 45578326 (+) False LOC110520030
XM_021596996.2 mRNA downstream 32367 45571665 ~ 45580003 (+) False LOC110520030
XM_021596997.2 mRNA downstream 32367 45571665 ~ 45580003 (+) True LOC110520030
XM_036974276.1 mRNA downstream 186939 45726237 ~ 45821275 (+) False asic4a
TU298041 other upstream 984057 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1256914 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 5057285 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 5057285 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 5841377 39659059 ~ 39668088 (+) True LOC110519960
TU299672 other downstream 299623 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 394821 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 536186 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 644836 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 1291710 46831008 ~ 46832134 (+) False LOC110520046

Expression Profile