RNA id: XM_021596992.2


Basic Information

Item Value
RNA id XM_021596992.2
length 2311
RNA type mRNA
GC content 0.42
exon number 12
gene id LOC110520026
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45539844 ~ 45567046 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGGAGAGACtattgccgcgttcaaaacaacggGGAGCTCGGAACTGAGAAATCTCTGACTTCCAAATTCAGTGCGCTCAAGATAACTGGGAAATCGGGAAAAAAACGAGCTCCAACTTGGAAAATCTGACGTCATGATTTGTCCCCGTTTTTCCCAATTGCCTTGAAAGCACCATTAGGACACAGCTGGCGCTTAAACCAAGTAGCGAAAACTAAAACGGACCCAGACCTTAACCAAACCCTTAAACATACCCCTAaccaatacattttgaaatatcGGGTTGGGCGTCAGGCGTGTCCTAAAAGGCGTTTTCATGTGTTGTCCATATCATTGCGAACCATATAGCCAAGTCTGAATGTAGTTTCTAGTCAGTAATATTAATTGAATATTGATAACACATACAGTTTACACCCGACAAGTCAAGAGCCTACAAACAAGTAAAGAAAGTGACAACTAAATCCAAAGGTCTCTAGTCTAGACATCCGCGTTCCCACAATTTTCAAATGCTTCGGGTCTGGTTTTCGAGACTAGTGGTGTTGGGTGATTATGGGCCCAGTCACTTTTCGGTCACTATCGCCTAATTGTTATTTCCACTTCTGCAGTGCCCATATCGCATGTCATAATGTCAAAGTCGGATTTCCCTCCAGCCTATGAAGATGCACTACATGGCCCCAGGCCCCGGCATGGGAACTACCCACAGCCCCCACCAGCGTATGGACCATACCCTGCTCAGTCCTCTGCTCAATACCCAGGACAAGCAGGGTACCCTCTGGGCTACCCTCCTTCTGGGATGCCTTATTCCATTCCTCTAGGAATGCCCACCTCCAACCCAGTGGAAGACGATGAATATCCTTATTCTACAGCATGGGAAAGCATTTCTATTCGACATGCGTTCATCCGAAAAGTGTACTTAATATTGGCTGCTCAGCTCATCGTCACGGTATCAATTGTGGCTGTGTTTACATTTGTTGAGGAAGTACGTGCGTTTGTCATTAGGAACCCAGCCGTGTATTGGACATCATTCGCTGTTTATTTAGTCACTTATTGCATTCTTGTCTGCTGCGAAGGGCCAAGGAGACGCTTTCCTTGGAACTTTGTGCTGCTGGCCATTTTTACACTGGCCATGTCCTACATGACAGGAACAATATCAAGTTACTATGACACAAAAGCAGTGTTACTGACCATTGGAATAACAGCAATAGTGTGCATAATTGTCACCATCTTCTGCTTTCAAACTAAGGTGGATTTTACATCTTGTGGGGGACTTTTCAGTATTCTTGCCATCGTAGTCTTGGTTACTGGGATCATTACAGCCATCGTGCTATCCTTTAAATATGTCCCATGGCTTCATATGCTCTATGCTGCAATTGGAGCTGTCATTTACACCCTgTTTTTAGCATACAACACCCAGCTTCTCATCGGAAACCGCAAGCTTTCCATCAGCCCAGAGGAGTATGTTTTTGGAGCACTTTCACTTTATGTTGACATTGTCCAGATCTTCATTTTCCTCCTGCAACTAGTTGGGGCTTCCACAGATTAAAGGCAGGAGGATGACATACGACCTAGTGTGGATGGATCCTACTTATATTGTATTTTGTCACCTCAAACTGTTGCTGCTCATACAGGACTGTAAattagttttttttcttcttgtaATACCATTAACATAACCCTATGAGAGTGCTGCAAACTTTCAATGAAGATCGTTGTATATTTACTTATTCCCAGAATGGATGTTGGTTATGTGATGATTTGGTAAGTTATGAATGCAATATGCATACATGATTGTCTGAATCGCATTTGATTTGACCTACATATTTGTTTAAAATACAGTTGTCCTCGTGTTGCCTTTTTCCTTAAACCGTAAAAATGTCAAACGTAATTAATTCATTGTCAAAATGGCTCAAACTGTCTCTGAATGCATCCATTGGTGGTGTTACAGTTCAGCAacaaggccagagggggtgtggtatatggccaatataccacggctaagggctgttcttagcgtgacgcaatgcagagtgcctggacagagcccttagccgtggtatgttggccatatatCATAAACCACCAAggtgccttatttctattataaacttgttaccgatgtaattagagcagtaaaaatgtgttttgtcACACCCATAGCATACacgtgtcagccaatcagcactcgaaccacccagtttattatAACATCGCTTCCATTTTCCTCAATTGTATATGTGATAACTGTAAAGTTTACTTTTCTTGATATACATTTCTGATTATCAGAACCAATAATTAAAGACAATATCTCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299406 lncRNA downstream 32276 45507246 ~ 45507568 (-) True G263293
TU299222 lncRNA downstream 243391 45294739 ~ 45296453 (-) True G263122
TU299234 lncRNA downstream 279645 45255713 ~ 45260199 (-) True G263133
TU299227 lncRNA downstream 291024 45244750 ~ 45248820 (-) True G263127
TU299226 lncRNA downstream 296755 45242808 ~ 45243089 (-) True si:ch211-136m16.8
TU299448 lncRNA upstream 42522 45591259 ~ 45591483 (-) True G263332
TU299489 lncRNA upstream 74250 45622987 ~ 45623447 (-) True G263373
TU299767 lncRNA upstream 285569 45834306 ~ 45834950 (-) True G263640
TU299771 lncRNA upstream 295346 45844083 ~ 45844346 (-) True G263644
TU300453 lncRNA upstream 335479 45884216 ~ 45884464 (-) True G264287
XM_036974233.1 mRNA downstream 77076 45434956 ~ 45462768 (-) False LOC110520023
XM_036974234.1 mRNA downstream 77076 45434956 ~ 45462768 (-) True LOC110520023
XM_036974232.1 mRNA downstream 77078 45434956 ~ 45462766 (-) False LOC110520023
XR_005046275.1 mRNA downstream 77078 45434956 ~ 45462766 (-) False LOC110520023
XR_005046182.1 mRNA downstream 106986 45403748 ~ 45432858 (-) True LOC110520020
XM_021596995.2 mRNA upstream 31366 45580103 ~ 45587403 (-) False si:ch1073-416j23.1
XM_036974256.1 mRNA upstream 31366 45580103 ~ 45587525 (-) False si:ch1073-416j23.1
XM_036974264.1 mRNA upstream 31366 45580103 ~ 45587671 (-) True si:ch1073-416j23.1
XM_021597001.2 mRNA upstream 282193 45830930 ~ 45845044 (-) True LOC110520032
XM_021597004.2 mRNA upstream 472233 46020970 ~ 46024407 (-) True LOC110520035
TU299385 other downstream 2302 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 435581 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 527595 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1508339 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 3214066 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 2050481 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2483310 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 3946740 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 3953679 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 4015111 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile