RNA id: XM_021596997.2


Basic Information

Item Value
RNA id XM_021596997.2
length 2588
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC110520030
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45571650 ~ 45580003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATAACTCACATTCCCATAATCCTCAGTTTTACGCGGTGACGTATTGAGCATAACAAACAACTCAGGAAGAGCATATTTGATCCAGGTTAGACAGCTACCTACACATTCAAAATGCTGAAGGCTGTGATTCTCATTGGAGGCCCGCAGAAAGGGACACGGTTTCGACCGTTGTCATTTGAGGTCCCAAAACCCTTGTTTCCAGTTGCTGGTGTGCCCATGCTACAGCATCACATTGAAGCATGTGCCAAGGTGCCAAATATGAAGGAGATTTTGCTTGTTGGCTTTTACCAGCCAAATGAAGAACTTACCAGATTCATTTGTAGCGCACAGCAGGAATTCAAAATCTTAATCAGGTATTTGCAGGAGTTTGCTGCTTTGGGCACTGGGGGCGGAATCTACCACTTCAGAGATCAGATTCTATCTGGTGGCCCAGAGGCATTCTTCATCATGAATGCTGACGTGTGCTCTGAGTTTCCTCTACCAGAGATGCTCAACTTCCAGAAAGAACACGGAGAGCCAAGCAGTTTCGTCATCATGGGGACAACTGCAAACAGAAAGCAGTCCATGAATTATGGCTGTATTGTGGAAAACCAGCAAACAAATGAGGTTTTACATTATGTGGAGAAGCCTAGCACTTTTGTTAGTGACATCATCAACTGTGGAATATACCTGTTTACCCCGGAGATCTTCCAACACATTGGGGCAGTCTTCCAGAAGAACCAGCAGGACATGCTGTTAGATGAGCAGACCAATGGCAACGGCTGGCATCGGGCTGAGGCCATTCGGTTAGAACAGGACATTTTCACAGCCCTGGCTGGGCAGGGCAAGCTCTACGTCTACAAAACACCTGCCTTCTGGAGCCAGATCAAATCTGCAGGGTCTGCAATATACGCCAGTCGGTTGTACCTTAACCAGTACCATAAAACACATCCTGAAAGACTGGCTACAACTGAGGATGGAGGGCCTAGAATAAGTGGAAATGTTTACATTCACCCAACAGCCAATATTGACCCTACTGCGGTGTTGGGGCCCAACGTCTCGATAGGCACAGGAGTGACCATCGGGGCTGGGGTGCGTGTAAGAGAGTCCGTCATCCTCCACGGGGCTACCCTACAGGATCACAGTTGTGTGTTGAACTGTATAGTGGGGTGGGACAGCACTATTGGCAAGTGGGCCAGAGTTGAAGGAACTCCCAGTGACCCAAATCCAAATGACCCCTATGCAAAAATAGACAGTGAAACACTCTTCAGAGATGGAAAACTCACACCATCAATCACCATTCTTGGTTGTAATGTGACTATCCCATCGGAGGTGATCATACTCAACTCAATTGTTCTGCCACACAAAGACCTCAACAGGAGTTTCAAAAACCAAATTATACTGTAGTTAATTTGCTGCGTTCATTTAGTGTCAAACTAATTAAGGATTGTAGCTTGAAGATCAATGTCACTGCCTCTGGGTTATTGTATAGAAGATGACACTAGGTGTTTGGAAAGATTGTAGGTTTTAGCCTTTATAAATTAAAGGATGTAAATGAGATGGTTTGGAGGATGATAGTGGGTCGGTTAGATTACCTCGACATGAATGTCATCCCGTAACTTTGAGCGGCCGCCCGCCTGTGTTTTGTTAAAAAGCTGAGGAAtgagcctggagaaatgtaaaccACTCAATttcagagctatggatgcaaccATGTTGAGGCTAGACAGTGTTTAAACATTTGCGTAAAACAAGCTTTTATTTTggattctgatggggtacgacagttgagcTAAGCACGAGGTATAAGTTAATCTTCAAGAATCAAAAGGGTGTGTGCACACAATTAAGTCAAATTGATGGAGCAACTAAAGGATTCTAATTTTACATTTCTGCACTATCCCTATGATTAGCTCTGGATTCACTACCATGTAAGGGAAATTAAAACAATGGTAATTTTGGCATAGGGTTTGGTAGCAGTACTTACCATTCATTGGTGCTAGCCTAGTTACTGAAATGTCATCTTGGAAAGAAGTGAAAGTCTGCAGCTGATCTAGTAAGATTACAAAATGAAAGGAATTGGTTTGCTGTTTAATTTTGAGGGGTAATTTGGGGGCCTTTTTACACGCGCTTTGATTAAAACATGACAATTAATTGCAAGCGTTTACATTCTGAAAGAAATGACTGCCTCATGTTTTTGGTTAAAGGGGCAAGCAGTAGTTCGAAATAAGTGGCAACCTTGCCCGTTTTGGTAaatagctgagggatggggctgttGAACTCTACCacttcaaattcatagacagcgctagggatgcaaggactgaccaaccATGAGATAAAGTTTAACCTTGAGGCTAGTGTTTGTCCAAAAATGAATGTACCAATTGCAATCAAGAAATGTTTGCTTTCAATTTGAACATGGCAGGGAACTTAGATTCGGGGCTGTAGGAGAGATTTACTTTAATGAGTAGCCATTGATTCTGTACATGTGACAATCAAATGGGAGATTGTTACCCAGTATAAAATTGTTGCTGCATGCCTAATTTGCTTCAAAATCAAGCACTccttgttttaaaaaaataaaataaaaacttttaactaaa

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG:

id description
K00966 GMPP; mannose-1-phosphate guanylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298928 lncRNA upstream 83285 45400277 ~ 45488380 (+) True G262852
TU298957 lncRNA upstream 236299 45335127 ~ 45335366 (+) True G262875
TU298898 lncRNA upstream 317217 45254197 ~ 45254448 (+) True G262827
TU298891 lncRNA upstream 328574 45242850 ~ 45243091 (+) True G262820
TU298884 lncRNA upstream 344281 45227173 ~ 45227384 (+) True G262814
TU299447 lncRNA downstream 11250 45591253 ~ 45591539 (+) True G263331
TU299478 lncRNA downstream 37135 45617138 ~ 45617349 (+) True G263362
TU299488 lncRNA downstream 42995 45622998 ~ 45623306 (+) True G263372
TU299492 lncRNA downstream 44274 45624277 ~ 45624493 (+) True G263376
TU299515 lncRNA downstream 64190 45644193 ~ 45644394 (+) True G263399
XM_021596994.2 mRNA upstream 10283 45549912 ~ 45561382 (+) True pnkd
XM_021596990.2 mRNA upstream 32367 45509465 ~ 45539298 (+) True dars1
NM_001124342.2 mRNA upstream 69526 45500138 ~ 45502139 (+) True LOC110520024
XR_005046279.1 mRNA upstream 75685 45494309 ~ 45495980 (+) True LOC118956876
XM_021596985.2 mRNA upstream 172857 45340332 ~ 45398808 (+) True glsb
XM_036974276.1 mRNA downstream 146234 45726237 ~ 45821275 (+) False asic4a
XM_021596999.2 mRNA downstream 146234 45726237 ~ 45821291 (+) False asic4a
XM_021596998.2 mRNA downstream 146236 45726239 ~ 45823301 (+) True asic4a
XM_036974278.1 mRNA downstream 272179 45852182 ~ 45884194 (+) True LOC110504149
XM_021597002.2 mRNA downstream 323662 45903665 ~ 45933022 (+) True LOC110520033
TU298041 other upstream 1046257 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1319114 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 5119485 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 5119485 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 5903577 39659059 ~ 39668088 (+) True LOC110519960
TU299672 other downstream 258918 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 354116 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 495481 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 604131 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 1251005 46831008 ~ 46832134 (+) False LOC110520046

Expression Profile