RNA id: XM_021596999.2


Basic Information

Item Value
RNA id XM_021596999.2
length 2102
RNA type mRNA
GC content 0.52
exon number 11
gene id asic4a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45726237 ~ 45823301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGAGGAGGAAATAATCACAGTGTTCCCTTCTCATGAATTATTAAGTAGCCCCCTGCCTCTTTTAGCTTGACTCAAAATGCTGCATTTTCATCTGTGGGTCTGAAGCGGAGAGCAAGGGTGTTTTTTTTGACAGCTGTATTACTGCTGATAAGCAAGACTCTGCGAGATGATCAAGTACTGAGACACGCATCCAgaacagcagcacagcagcactATTCACTACGAGCAGTGGCAgtcagtagcagcagcaggagcagcagcagcactaacagcagcagcagcaacagcaactCTCTCGtgcctttttcttcttctttgtggAGTTGTAATCTGTTCTGAGGACAACAGCCAGAGAAGACGGGACAAGTGGATCAGGGCTGACAGCTGTCATCAAAACAACCCCAAACGCAGAGCTGGCTGCCCACATGCCGATCGAATTTGTTTGCAAAATCAAATTTGCAGAGGAGGATGAGAAGCAGAAAGGCAAGCAGGATGGGGACAAGGAGAGCCTGATTGAGGAGAGCTGCTCACCTCCAGCTAAGGACCTGGTCGGCTTCGCCAACTCCAGCTCTCTCCACGGGATTAACCACATCTTTGTCTCGGGGCGCCTGGGCATTCGGCAGACCCTCTGGGCACTTGCCTTTTTGGCTTCTCTGGCACTCTTTCTGTACCAGGCGGCAAAGTGTGCCATCTCTTACCTGGAGCACCCTCACGTCACCGCTCTGAATGAGGAAGCGAGCCCTGAGATGGTCTTTCCCGCTGTGACCATCTGCAACATCAACCGCTTCCGCTTCTCCGCTCTCACCGACGCCGACATCTACCACCTGGCTAACCTCACAGGTCTACCACCAAAAAACCGGGATGGCCACAAGCCCACCGATTTGGACTATCCTGCGCCGGACATGCAGGACATCTTCAACCGGACAGGACATCAGCTGGACGAGATGCTGAAGAGCTGCAACTTCAGTGGACAGAACTGCTCTGCTGAGGACTTCTCTGTGGTCTACACCAGATACGGAAAATGTTACACTTTCAACGGGAACAAGTCGACGTCCAGGAAAACCAAGCAAGGTGGAATGGGAAATGGCCTGGAGATTATGTTGGATATTCAACAGGACGAGTATCTCCCCATCTGGAAAGAGACAAATGAGACGTCGTTAGAGGCAGGGATCCGCGTGCAGATCCACAGCCAGGATGAGCCTCCCTACATCCACCAGCTGGGCTTCGGAGTCTCCCCGGGATTCCAGACCTTTGTTTCATGTCAGGAACAAAGGCTGACCTACCTGCCCCAGCCCTGGGGGAACTGCCGCTCCACCAGCGACCAGATGATCCCGGGATACGACACCTACAGCATCAGTGCCTGCCGCCTGCGCTGCGAGACCAGGGAGGTGCTCCGGGAGTGCAACTGCAGGATGGTGCACATGCCAGGAACTGCCGATATCTGCACTCCCAGTAACATCAAGTGTGTTGACAAGGCGCTTGCCCTTCTCCAGAAGAGCACTGGGGACACCTGTCCCTGTGAGACACCATGCAACCTGACCCGCTACGGCAAGGAACTCTCCATGGTCAAGATCCCCAGCAAGGGCTCCGCTCGCTACCTGTCCAGGAAGTACGACAAGTCTGAGGAGTATATCAGAGACAACTTTCTGGTGCTGGACATCTTCTTCGAGGCTCTTAACTACGAAACAATTGAACAAAAAAAAGCGTACGATGTTGCAGGTTTACTAGGTGACATTGGAGGCCAGATGGGCTTGTTCATTGGAGCCAGTATTTTGACAATCTTAGAAATTTTGGATTATGTTTACGAGGTGATCAAGCACAGGCTGCAGCGTCTGCTGAGGCCACAGAAGGATGAGAAGAAACAACAGACGACCACAGTTGCAACTGTGGATCTGCAAGATATGAAAGCCAGTAAGGATTACATCCCCCCAGAGGCAACTCCAATTCCCAGGAGTCCAGTGATATGACCATGATCAGAAGTCATCCTGAAGGAGCTTACGCCAATACGATTCTACCGAACCACCATCTCCCCCACCACCAAGGACAGCCACATGTGTTTGAGGACTTTGCCTGCTAGAGCCGGCGGCCATCTTTCCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299569 lncRNA upstream 36379 45689470 ~ 45689858 (+) True G263453
TU299515 lncRNA upstream 81843 45644193 ~ 45644394 (+) True G263399
TU299492 lncRNA upstream 101744 45624277 ~ 45624493 (+) True G263376
TU299488 lncRNA upstream 102931 45622998 ~ 45623306 (+) True G263372
TU299478 lncRNA upstream 108888 45617138 ~ 45617349 (+) True G263362
TU299640 lncRNA downstream 4392 45825683 ~ 45830272 (+) False G263516
TU299641 lncRNA downstream 4392 45825683 ~ 45830272 (+) True G263516
TU299674 lncRNA downstream 12344 45833635 ~ 45833881 (+) True G263549
TU299673 lncRNA downstream 12986 45834277 ~ 45836050 (+) True G263548
TU299675 lncRNA downstream 19243 45840534 ~ 45840763 (+) True G263550
XM_021596996.2 mRNA upstream 146234 45571665 ~ 45580003 (+) False LOC110520030
XM_021596997.2 mRNA upstream 146234 45571665 ~ 45580003 (+) True LOC110520030
XM_036974274.1 mRNA upstream 147911 45571650 ~ 45578326 (+) False LOC110520030
XM_021596994.2 mRNA upstream 164855 45549912 ~ 45561382 (+) True pnkd
XM_021596990.2 mRNA upstream 186939 45509465 ~ 45539298 (+) True dars1
XM_036974278.1 mRNA downstream 30891 45852182 ~ 45884194 (+) True LOC110504149
XM_021597002.2 mRNA downstream 82374 45903665 ~ 45933022 (+) True LOC110520033
XM_021597003.2 mRNA downstream 186908 46008199 ~ 46010647 (+) True LOC110520034
XR_005046468.1 mRNA downstream 211474 46032765 ~ 46043845 (+) True LOC118957146
XM_036974285.1 mRNA downstream 520557 46341848 ~ 46441801 (+) False LOC110520040
TU298041 other upstream 1200829 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1473686 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 5274057 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 5274057 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 6058149 39659059 ~ 39668088 (+) True LOC110519960
TU299672 other downstream 17630 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 112828 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 254193 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 362843 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 1009717 46831008 ~ 46832134 (+) False LOC110520046

Expression Profile