RNA id: XM_021596998.2


Basic Information

Item Value
RNA id XM_021596998.2
length 4075
RNA type mRNA
GC content 0.45
exon number 10
gene id asic4a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45726237 ~ 45823301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGGAGGAAATAATCACAGTGTTCCCTTCTCATGAATTATTAAGTAGCCCCCTGCCTCTTTTAGCTTGACTCAAAATGCTGCATTTTCATCTGTGGGTCTGAAGCGGAGAGCAAGGGTGTTTTTTTTGACAGCTGTATTACTGCTGATAAGCAAGACTCTGCGAGATGATCAAGTACTGAGACACGCATCCAgaacagcagcacagcagcactATTCACTACGAGCAGTGGCAgtcagtagcagcagcaggagcagcagcagcactaacagcagcagcagcaacagcaactCTCTCGtgcctttttcttcttctttgtggAGTTGTAATCTGTTCTGAGGACAACAGCCAGAGAAGACGGGACAAGTGGATCAGGGCTGACAGCTGTCATCAAAACAACCCCAAACGCAGAGCTGGCTGCCCACATGCCGATCGAATTTGTTTGCAAAATCAAATTTGCAGAGGAGGATGAGAAGCAGAAAGGCAAGCAGGATGGGGACAAGGAGAGCCTGATTGAGGAGAGCTGCTCACCTCCAGCTAAGGACCTGGTCGGCTTCGCCAACTCCAGCTCTCTCCACGGGATTAACCACATCTTTGTCTCGGGGCGCCTGGGCATTCGGCAGACCCTCTGGGCACTTGCCTTTTTGGCTTCTCTGGCACTCTTTCTGTACCAGGCGGCAAAGTGTGCCATCTCTTACCTGGAGCACCCTCACGTCACCGCTCTGAATGAGGAAGCGAGCCCTGAGATGGTCTTTCCCGCTGTGACCATCTGCAACATCAACCGCTTCCGCTTCTCCGCTCTCACCGACGCCGACATCTACCACCTGGCTAACCTCACAGGTCTACCACCAAAAAACCGGGATGGCCACAAGCCCACCGATTTGGACTATCCTGCGCCGGACATGCAGGACATCTTCAACCGGACAGGACATCAGCTGGACGAGATGCTGAAGAGCTGCAACTTCAGTGGACAGAACTGCTCTGCTGAGGACTTCTCTGTGGTCTACACCAGATACGGAAAATGTTACACTTTCAACGGGAACAAGTCGACGTCCAGGAAAACCAAGCAAGGTGGAATGGGAAATGGCCTGGAGATTATGTTGGATATTCAACAGGACGAGTATCTCCCCATCTGGAAAGAGACAAATGAGACGTCGTTAGAGGCAGGGATCCGCGTGCAGATCCACAGCCAGGATGAGCCTCCCTACATCCACCAGCTGGGCTTCGGAGTCTCCCCGGGATTCCAGACCTTTGTTTCATGTCAGGAACAAAGGCTGACCTACCTGCCCCAGCCCTGGGGGAACTGCCGCTCCACCAGCGACCAGATGATCCCGGGATACGACACCTACAGCATCAGTGCCTGCCGCCTGCGCTGCGAGACCAGGGAGGTGCTCCGGGAGTGCAACTGCAGGATGGTGCACATGCCAGGAACTGCCGATATCTGCACTCCCAGTAACATCAAGTGTGTTGACAAGGCGCTTGCCCTTCTCCAGAAGAGCACTGGGGACACCTGTCCCTGTGAGACACCATGCAACCTGACCCGCTACGGCAAGGAACTCTCCATGGTCAAGATCCCCAGCAAGGGCTCCGCTCGCTACCTGTCCAGGAAGTACGACAAGTCTGAGGAGTATATCAGAGACAACTTTCTGGTGCTGGACATCTTCTTCGAGGCTCTTAACTACGAAACAATTGAACAAAAAAAAGCGTACGATGTTGCAGGTTTACTAGGTGACATTGGAGGCCAGATGGGCTTGTTCATTGGAGCCAGTATTTTGACAATCTTAGAAATTTTGGATTATGTTTACGAGGTGATCAAGCACAGGCTGCAGCGTCTGCTGAGGCCACAGAAGGATGAGAAGAAACAACAGACGACCACAGTTGCAACTGTGGATCTGCAAGATATGAAAGCCAGTAAGGAGTCCAGTGATATGACCATGATCAGAAGTCATCCTGAAGGAGCTTACGCCAATACGATTCTACCGAACCACCATCTCCCCCACCACCAAGGACAGCCACATGTGTTTGAGGACTTTGCCTGCTAGAGCCGGCGGCCATCTTTCCATCCTGATGACAACAAAAGTTGTGTCCTCTCTGGGCTGGATCGGGCATCAAAACAGACCCTGGGACCTCAGTTCTATACCTTTCTTGCTGTCACCAGTGAAAAAGCTACAGCCAAAGTTGAACACCAAACCTGTGCTGCAAACAGACCACTTGTATGTAAGCACAGATTGGACCCCACATTACTGTCCAGCTGGAGACGCCCACCTTCAATCTTCCTACAATTGACAGCTGGCCACTCTGCGATTTCTATACTGGTTATTTTGGTACATGGTCACCACATGGGAACAAGACAAGGACTGCATGTCATTTTGAGCCATCTTGATTCATTTCTACTCAACTCCAGTATCTTGATTTGTGTACCTTTCTtaatttgttattattattctcAATAAGTTCTCACTCAGCTCACTGTTTTTGAATCATTGTAAAATATGTCATTATTTGATGAGACATCATTTCCCCTTTATATTGTATACAAGATGAGTATAAGACAGGTGGTCATATTCAATCGAACCATTATACAGAGATATCAAACAAAATCAGAGGAATTACATTGATCTTTTGGCGTGTTAAAACCATACTATCCTCGCTTTGATGATAGGGCCCATACTGCGTACCAGCTATACACtatttagtatttattaggatccccattagctgctgccaaggtagcagctactcttcctgtggtccaagCAGGGTTAAAACAATTACATCACAACCAAACACAACAGCCGAAATCATAAATAAAACAACGCATCATACAATATATTACATTATTGCTCTTTTATTACAAATGTACAATATAAAATCCACAATACCACattacaaatgtgtgtgtgtgtgtgtgtggagagtgaGTGTGTTAGATTGTGTGTAAGTGTttgggtctcttcacagtcctcgttgtgccatgaggtgttgTTTTATCTGATTTTAGTGCTCGCTTGAGTTATTTGGTGTggaagagagttccatgtagttatggctctatgtagtactgagTTTCCcagagtctgttctggacttcgggactgtgaagagacccctggtggcatttcttgtggggtatgtatgggtgtctgagctgtgtatTAGATGtttgaacagacagtttggtgCTTTCAACACGTCAATACCTCCCACAGAGGCAAGCAGTGAGGaggtcaatctctcctctactttgagccaggagagattgacatgtctGGTTTATGGGAAAGGTGTTTTAGAGAGTAGCATTATACATTTACATAGGTTCAACCTGAACACAAAGAGAAAGCACTGTTTTAAATGGATAATTATTAATTTAATTCAACACTAATACTAATTTTTGTAATTGATTTATATATTTTAgagaaaattattttaaaaatatatacatatatatatatatatatatatatatatagctgttATGATTGTAGTAATCACACTGACATATTGTTTATTAGCAAAACCAGTCAGAAAGATGATTGGAATTGCCTTGCTCCATCCAAGCAACAAAATGCACATAGATATGGTTAGTATGACTgtcattatttgtattttatttactgACTTGGGTGAAGTTCTTACAACAATTATGGTGTCCATATTGGGTCATCATTCAAAAAGGCAATGAATAGCAAGCAACAAGCTGTGCTGTGAATCCCCTTGACATGGATGAATCAGAATACACACAATTGAGCACATTCCACAGTCTGTAGTAGCTGAGCGCCTCTATTTAAAGAAAGGGCCAGAAGAGTCCTTTCCCATAAATCCCTGTTGGAAGCAAAGTTGCTTCCAAAATAATTGCTTTATGTCTCCTGCACAATCTCTTGGCTTAGATAGTGAATTTGTTACAGTAAAAGTTTATCCTGGACTAAAACTGCTGTCCACTCCAGTGTAGAACAGCCTCAGTGAAAGACCTATCACTTTGACTACTGTCTGAAAATCGACTGTAGGTATACGATTTTGTATTTTGCTGGGTTATTCATTTATACCTCACATTACAGCACACAATCACATAAAT

Function

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG:

id description
K04831 ASIC4, ACCN4, BNAC4; acid-sensing ion channel 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299569 lncRNA upstream 36381 45689470 ~ 45689858 (+) True G263453
TU299515 lncRNA upstream 81845 45644193 ~ 45644394 (+) True G263399
TU299492 lncRNA upstream 101746 45624277 ~ 45624493 (+) True G263376
TU299488 lncRNA upstream 102933 45622998 ~ 45623306 (+) True G263372
TU299478 lncRNA upstream 108890 45617138 ~ 45617349 (+) True G263362
TU299640 lncRNA downstream 2382 45825683 ~ 45830272 (+) False G263516
TU299641 lncRNA downstream 2382 45825683 ~ 45830272 (+) True G263516
TU299674 lncRNA downstream 10334 45833635 ~ 45833881 (+) True G263549
TU299673 lncRNA downstream 10976 45834277 ~ 45836050 (+) True G263548
TU299675 lncRNA downstream 17233 45840534 ~ 45840763 (+) True G263550
XM_021596996.2 mRNA upstream 146236 45571665 ~ 45580003 (+) False LOC110520030
XM_021596997.2 mRNA upstream 146236 45571665 ~ 45580003 (+) True LOC110520030
XM_036974274.1 mRNA upstream 147913 45571650 ~ 45578326 (+) False LOC110520030
XM_021596994.2 mRNA upstream 164857 45549912 ~ 45561382 (+) True pnkd
XM_021596990.2 mRNA upstream 186941 45509465 ~ 45539298 (+) True dars1
XM_036974278.1 mRNA downstream 28881 45852182 ~ 45884194 (+) True LOC110504149
XM_021597002.2 mRNA downstream 80364 45903665 ~ 45933022 (+) True LOC110520033
XM_021597003.2 mRNA downstream 184898 46008199 ~ 46010647 (+) True LOC110520034
XR_005046468.1 mRNA downstream 209464 46032765 ~ 46043845 (+) True LOC118957146
XM_036974285.1 mRNA downstream 518547 46341848 ~ 46441801 (+) False LOC110520040
TU298041 other upstream 1200831 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1473688 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 5274059 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 5274059 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 6058151 39659059 ~ 39668088 (+) True LOC110519960
TU299672 other downstream 15620 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 110818 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 252183 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 360833 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 1007707 46831008 ~ 46832134 (+) False LOC110520046

Expression Profile