RNA id: XM_021597001.2


Basic Information

Item Value
RNA id XM_021597001.2
length 3466
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110520032
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45830930 ~ 45845044 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATCTAGGCCACAGTATTGTGATCTATTTAGCCATGGGCGAGGTCGGCGGGTTTTATTTGACAATTTCTGTGATTCAGAGGGCTACAGAAAGAGTGCTGGAAACGCCTATGCTTATGTATTTCTGACGTTGGTGTGTTTTATTTGAGGCGGAGCTAGAGACCACTGACACGTAAGGATCCTGCATTAATTCCAAGGGAGAAGCTACATAGGCCTACATCTTTTTAGTCGAGAAGAATGTCCTTTTTAAATACAACCAGCTGCTAATGTTCTCTATTCGGATTGATGCATAAAATTACCCAACGAGTCGCACATTAGGGTGTGTGTAGGCTGGCGACGTAGTCTATAGTCAACGTTGAAAATGAGATTTGCAATGTTTATTTCTCTGCTGAGGCCGATCGGCCCGGTTATTATCGGTGTTTCTTTGGGATTTACCTTGAGTTTGCTTAGTGTCAATTGGGTAGAGGAAACTTGTGTCCTCGACGGGAAAGCGAGTGAAGAAATACGTTTGGCCCAAGATGGGAATTCAAAAGGAGCGAGGAGACCCAATTCGATATCGACTGTGGATGCCGAGGAAGATTTTGAGCCAAGAATAGTGCCATATAAACCAGTCCAACAAAGCCAAACAAAGCAACTTTTTCGGGCTAAGTACATCAGTACAGAGCTGGGGATCCGGCAGCGCCTCTTTGTAGGGATCCTGACGTCCAAAAGCACCATCAACACATTGGGAGTGGCCGTGAACCGCACCATCAGCCACCACCTGGACACTGTGGTCTTCTTCACCGGCATGCGCAACCGCAAAGTGCCCCACGGCATGTTCGTGGTCACCCATGGGGACGAGAGGCTCATATGGAACATTTTCCAGACCATCAAGTACATCTTGGAGCACTACGTCCATGAGTATGACTGGTTCTACCTGGCCCAGGACGACACCTACACCGAGGCAGACCGGATCCAACAGCTGGTGGACCACCTGAGCATAGACCGGGAGCTTTACATGGGCAGCCCTGAGGAGTTTATaggtggggagatggaggggaggtaCTGCTACGGTGGGTTCGGATACCTCCTGTCCCGTACCCTGCTGCTCCGGCTCAAACCCTTCCTGGAGAACTGTAGGAATGACATCCTGAGCGCCAGGCCTGACGAGTGGCTGGGCAGATGCATCATTGATTATGCCAACACCAACTGTGTGGCTGAGCATGAGggGCTGCAGTACTACCATTATGAGATGGGCAAGAACTCGGATCCAAGTAAGGTGAAGAATGTGCAGTTTAATAATGCCTTGACTGTCCACCCGGTATCTGACCCTGAGCAGATGTACAGACTACACAAACACTTCACTGAAATCGAACTTCGGAGGACATACGATGAGATTGAGAAGTTGCAGGCAGAGATAAAGAATGTGAGCAAAGTGGCTTTTGATGGCAACCGGAGCGCCCAGTGGCCCGTTGGGATCAATCCTACGTTTGAGCCGAAGTCACGTTTTGAGGTCATCCGATGGGACTACTTCACAGAGGAGCAGGTCTATTCATGCATTGACGGCTCCCCCAAGTGTGAACTGCGTGGCATTGATCGGTTGGACGTGGCTGACGTCATCGAGAGAGCCATGGGGGAGCTGAACAAGAAGTACAAGCCTGTCCTCCACCTGAAGAAGCAGCAGCTGATCAACGGCTACCGCCGCTTCGACCCCACTCGGGGCATGGAGTACACCCTGGACCTGCAGCTGGAGGTGGTCAATCAGAAGGGCCGCAGTCGCTCCATCACCAAGAGGGTCCACCTGGTGCGTCCCCTGAGTCGCATCGAGATCATCCCCATGCCTTACGTCACAGAGGCCACCAGGGTTCACGTCATCTTGCCGTTGACTTTTCAGGAACGGGGTGCCGTCAACCATTTTCTAGAAGTGTTTGCCACAAATTTGTTTGAGACCAGTGACAACGCCATCTTGACTTTACTGTTTATCTACGACCCATTCGAGGCCCAGCAGGTCAACCAGAATGACATATTCGCCAGTGTTAAAGCGCAGATCAATGCATACGAACGCAAGTATCCGGCAGTGAAGATCCTGTGGATAAGTGTCAAGACAGAAACCCCTTCTCAAATCAAATTCATGGACATCATTTCCAAGAAGCACCCAGTAGACACGCTGTTCTTCATCACCAACGTCAACACCAACGTCAACTCCGAGTTCCTCAACCGTTGCCGCATGAACTCCATCAACAACTGGCAGGTATTCTTCCCAATCCACTTCCAGGACTACAACCCAGACATTGCCTTCCACAACCAGGAGCCCCCACCCACAGTAGACCTGGTCAAGGACGCCGGACACTTTGACCGCAGTTCTTTCGAGGAGGCGTGCTTCTACAACTCCGACTACATGGTGACGCGCACGCGCATGGCCTCCGACGTGCAGGAGAACGAGGAGATCATGGAGACCTTGGATATCTATGACATGTTTGTCAGGTACTCCACCCTGCATGTGTTCAGGGCTGTGGAGCCGGCTCTGCACCAGAAGTACCACTACCAGGCCTGTAACCCGCAGCTCAGTGAGGACATCTACCACAGGTGTGTCCAGAGCAACCTGGATGGCCTGGGATCCCGTTCCCAGCTCGCCATGCTGTTATTTGAACAAGAGCAAGGAAATAGCACTTGATCACCAGCCCCCTTAGAAACTTGACctagtatgtgtgtgagtgtgatgtgtgtatgcgtgcgtgtttGTTTTAAAACTAATGCAGTACATTCCTAAGCGGAAACTTTTTTTAAACTAAATGTTTACAATAAAAATGTGCTGTCCGTACAGAAAACTATGGTGGAACCAATTGTGGTTTAAACATTCGGATTTGGTGGTCATGCTGGTCATCTCATTATTTTAACATGTTACAAAAGTTCTACATACCTTTTGTGGCTCTTGAGGGTATGGCTTTAAACCTGCACAGCTTTTGATACTTGGTCATTTGCAGTTTAGTAATCACTACTAAAGCACATGTGtgccttttctttcttttttttttatttccgtCAGTCCTCTTGTATTTTCATGTCCGTTATCATATCAAGCAAAATAAGTAGAGATGTTTTACATTGTATACGTTTTATCAATATTTGAGTCCCTTCCTTTCACATTACACTTCTCACATTTGAATGAATGAGCTGGCATCTGCAATATAGATTCACTCTACTCGCATGTTAACGGGAAGGAAGCTTTACGGCACTGACGTCATCAGATGCAGAATGCGATTACTGTGGGGTTGAGAGGATTGGATGGTATGTGTTGGTGCTGTGGGTCCCCATAGGTGACCTCACAAACAAGCCTGTAGATGTAGAGCCTCTTCAGGAGGttacagtaaaaaaaatagaACGATATGATTGTCTCTTCTTTAGAATAGGGAATTATGTAATCTTTATCCATTACATTTATATATGCAACGTTCTGAATGTTTTAACTCTGAATACACCCCTGGTCA

Function

GO: NA

KEGG:

id description
K00747 CHPF; chondroitin polymerizing factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299489 lncRNA downstream 207483 45622987 ~ 45623447 (-) True G263373
TU299448 lncRNA downstream 239447 45591259 ~ 45591483 (-) True G263332
TU299384 lncRNA downstream 260438 45531611 ~ 45570492 (-) True G263273
TU299406 lncRNA downstream 323362 45507246 ~ 45507568 (-) True G263293
TU299222 lncRNA downstream 534477 45294739 ~ 45296453 (-) True G263122
TU300453 lncRNA upstream 39172 45884216 ~ 45884464 (-) True G264287
TU300491 lncRNA upstream 87324 45932368 ~ 45933032 (-) True G264322
TU300492 lncRNA upstream 88002 45933046 ~ 45933276 (-) True G264323
TU300493 lncRNA upstream 88244 45933288 ~ 45933769 (-) True G264324
TU300497 lncRNA upstream 91477 45936521 ~ 45938430 (-) False G264326
XM_036974264.1 mRNA downstream 243259 45580103 ~ 45587671 (-) True si:ch1073-416j23.1
XM_036974256.1 mRNA downstream 243405 45580103 ~ 45587525 (-) False si:ch1073-416j23.1
XM_021596995.2 mRNA downstream 243527 45580103 ~ 45587403 (-) False si:ch1073-416j23.1
XM_036974236.1 mRNA downstream 263884 45539844 ~ 45567046 (-) True LOC110520026
XM_021596992.2 mRNA downstream 282193 45539844 ~ 45548737 (-) False LOC110520026
XM_021597004.2 mRNA upstream 175926 46020970 ~ 46024407 (-) True LOC110520035
XM_021597006.2 mRNA upstream 186438 46031482 ~ 46034427 (-) True LOC110520036
XM_021597007.2 mRNA upstream 198896 46043940 ~ 46047859 (-) True LOC110520037
XM_036974284.1 mRNA upstream 233017 46078061 ~ 46110748 (-) False LOC110504150
XM_036974282.1 mRNA upstream 233017 46078061 ~ 46239226 (-) False LOC110504150
TU299385 other downstream 293388 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 726667 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 818681 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1799425 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 3505152 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 1754174 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2187003 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 3650433 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 3657372 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 3718804 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile