RNA id: XM_021597002.2


Basic Information

Item Value
RNA id XM_021597002.2
length 2899
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110520033
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45903665 ~ 45933022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGTTCTCTAAATGACATTATAGGACCTCAGGGACTACAACGACGTCGCTGAAGTAGGCACATATTTAGCAGGAAACAACTTTGCTGTTATCATCATGTTGTCAAATGTGCTTCAAGACAGATGGCAATGTTGTCTGTCATTAGCTAGCACATTTCTCAGTGAAAATCCATGAATATAGGCCTAAAAATAATAATTGATGTAAGACTTATAAGTTcttagatcaactctccagtaggaggtgctgcccagcctattgttttttttcttctgatagtggatataatgTTCCAGATCGGACATTGTTTCAAATTTACCCTCAAAACAAcatgttgaaaattggttacccTGGTGACATAACCCTGTGGTTGAattttcaccctcaaaacaacattttaaatgCATGACGTTttgcaaatccaatgtattttccatgtcACAATACATTAACAAATTaagttgaaacaacgttgattcaaccagtgtatgCCCAGTGCCTACTGGGCACAGACATacattcaacatctattccacgttggttcaacatcaTTGTgttaaaatgatgtggaaacaacattgattcaaccagtgtgtgcccagtcgGTGGGTTGTCCTCCTCTGCCGCTATTAGTTACTCTGGGTGACGTAGAGGTGGGCTGGCAAAGTGCTAAGTGGTGTAGTTTAGAAATGCTATCAGTGTAATCAAATCATCACAAGTCAACGAGACTCCAGATAGCGCGCTGTTAGTACACCCACGACTTTCGGATGTATTCCAATGCAAATATCTTGGCGGAGCTGTCGTACAATTGTGCAGATGTGCGATAGCATGCAAGAGTGTTTAGTCGTCTCTCTTCCAACTTATTATCTTCATTCAATAAGTTGACAGATAGTGCAGTCAAACTAGTGTCGTTCTTTGAATGACTTGTCCTGCAGTCGTTAAGTACGTCCAGCACTTTGTCAGTCTTGTATCAGTTCTCAAATCAGATCCATACTTGAGCTCAAGACCTGTCATCCTCAAAGCGCGTCCCCCGGAACTCTGGAGTGGACAGATATTAGAGGGACATATAACTTGTTATACACCGCTCTATGTCATTTCTTATCTTTTGTCAAAAACAAGCGACACAATGGATTTCTCGCTCTGCCGCCTAATATGTCTTGTGATTGCAATCACTATGTTCAATCAAAGGGTAGATTCCAACAAGATTCTTGGGCTGAAGATCCCCAATATCGACCCCATTCTCAATGCTAACACCGTGTGCTTGACCCTGCCTGGACTGAACCACAGACAACTGGAGGTGTGCATGAGAAACCCCGACGTCACCGCCTCGGCCATCCAAGGCATCCAGATCGCCATCCATGAGTGCCAGCACCAGTTCAGAGGACACAGGTGGAACTGCTCCAGCCTGGAGACCAGGAACAAGATCCCATACGATAGTGTGGTTTTCAAACGAGGTTTCCGAGAGAGCGCCTTTGCATACGCCATCGCGGCAGCGGGCGTGGTCCACGCCGTGTCCAATGCCTGCTCCATGGGGAAGCTGAAGGCGTGCGGCTGCGACGAGAAGCGGAGAGGCGATGAGGAGGCTTTCCGCATCAAACTGAACCGGTTGCAGCTGGAGGCCATCCACCGGGGGAAGGGCATGGTGCACGGAGTCATGGAGCACTTCCCTGCAGACCTGCCCGGGCCTCAGGACTCCTGGGAGTGGGGAGGCTGCAGCCCGGACGTGGACTTTGGGGAGAAGTTCTCCAGGGACTTCCTGGACTCGCGCGAGACATACAAGGACATCCATGCCAGGATGAGGCTCCACAACAACAGAGTTGGCAGGCAGGTGGTGATGAACCACATGAGACGGAAATGCAAATGCCACGGGACATCAGGAAGCTGCCAGCTGAAGACCTGCTGGCAAGTCACACCGGAGTTCAGGGTGGTAGGCTCGCTGCTCAAGGAGCGTTTCCACATAGCCACCCTCATCAAAGCGCACAACAGGAACACGGGCCAGCTGGAGCACGCCCACCACCCCACACACAGACGGCTCAACGAGCTGGTCTACTTTGAGAAGTCCCCGGACTTCTGCGAGAGGGATCTGCGGTCCGACTCGGCCGGAACGCAAGGGAGGATCTGTAACAAGACGAGTCACGAAATGGACAACTGTGAAAGCCTCTGCTGCGGGCGAGGCCGTAACATTTTACAGCAGACCCGCAGTGAACGATGCAACTGCAAGTTCCACTGGTGCTGTTACGTGGTCTGCGAAGAGTGTCGAATAACAGAGTGGGTCAGTGTCTGCAAATGAAGAAATGGCGAAATGTAATAatctaccttttttttttaaaacagagaAAGACTGCAATACACCCCTTCCCTTTGCAATGGACTGCCATTTCCATTTAATAGAATGGATCGCACGAAAACAAGACTGGAATATAGCCAGTTCAAAGAGGTGCATTACCAATGTGTGCACAGCATGTGTCCAACCGCCACAGTTCCGAGACTCTAGATCTGCACTGCCTTTCATCTCGGAAAGTGTTTTTAGGATACATTAGATTAAAGATAGTGAGATACTATGGATGGTATTGATTACTGAGCACTCATTTATTTAAACAAGGCTTCCCGAAAATGACAAATGGCTGATTTTGTTATCTCTAGACTAAAACAACTGCATGGGATCCCGGTAAtttaagaagaagaagacaagcAGCAGTTGGGGAAAAGCTAGAGATTGTTCCAGAATGTTACATCTACTCTTGCTATACTCAGAGCGACAGGTTAACCATGTCAACTCATTTCgaatgtgttgtaatgtttcAGGTTACAAAATATGGCAATTCTAGATGTCACTCTGCAAAATGGCTACCTTGTCCCTCACAACAGTACATTTGTCCAtactggaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K01357 WNT10; wingless-type MMTV integration site family, member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299817 lncRNA upstream 2719 45900706 ~ 45900946 (+) True G263690
TU299813 lncRNA upstream 9419 45893940 ~ 45894246 (+) True G263686
TU299807 lncRNA upstream 14441 45888781 ~ 45889224 (+) True G263680
TU299679 lncRNA upstream 58824 45844404 ~ 45844841 (+) True G263554
TU299678 lncRNA upstream 60598 45842854 ~ 45843067 (+) True G263553
TU299842 lncRNA downstream 1488 45934510 ~ 45934780 (+) True G263711
TU299790 lncRNA downstream 4215 45937237 ~ 45937786 (+) True G263663
TU299851 lncRNA downstream 12744 45945766 ~ 45945983 (+) True G263720
TU299854 lncRNA downstream 22365 45955387 ~ 45955847 (+) True G263723
TU299855 lncRNA downstream 30163 45963185 ~ 45963511 (+) True G263724
XM_036974278.1 mRNA upstream 19471 45852182 ~ 45884194 (+) True LOC110504149
XM_021596998.2 mRNA upstream 80364 45726239 ~ 45823301 (+) True asic4a
XM_021596999.2 mRNA upstream 82374 45726237 ~ 45821291 (+) False asic4a
XM_036974276.1 mRNA upstream 82390 45726237 ~ 45821275 (+) False asic4a
XM_021596996.2 mRNA upstream 323662 45571665 ~ 45580003 (+) False LOC110520030
XM_021597003.2 mRNA downstream 75177 46008199 ~ 46010647 (+) True LOC110520034
XR_005046468.1 mRNA downstream 99743 46032765 ~ 46043845 (+) True LOC118957146
XM_036974285.1 mRNA downstream 408826 46341848 ~ 46441801 (+) False LOC110520040
XM_021597013.2 mRNA downstream 410224 46343246 ~ 46441801 (+) False LOC110520040
XM_021597014.2 mRNA downstream 410237 46343259 ~ 46441801 (+) False LOC110520040
TU299672 other upstream 64185 45838921 ~ 45839480 (+) True G263547
TU298041 other upstream 1378257 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1651114 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 5451485 40440069 ~ 40452180 (+) False LOC110519969
TU299841 other downstream 1097 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 142462 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 251112 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 897986 46831008 ~ 46832134 (+) False LOC110520046
TU300304 other downstream 897986 46831008 ~ 46832244 (+) False LOC110520046

Expression Profile