RNA id: XM_021597003.2


Basic Information

Item Value
RNA id XM_021597003.2
length 2449
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110520034
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46008199 ~ 46010647 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGGGTTGGCTAATTCTTCAGACTTGAACAACTAATCCTCGTTTAAGGAATTATCCCTGCTGCTTTTGACTCTCTCCGAACATTCCCCTGGTGTGAAGGTCTGTCTGTATACAGCTGACTGCTCGTGGGGTAGTGCGCTGCAGAGGCAGTGTCGTGTGAGAGTCGACCATTGCCTCCTGGAATTTCACTCATCAATATCCACTCAATTCCTATGAGAAACTATTTCCATCTGTCAACGCAATGGACCCGCATAGTCAATGGAATTAAATTTGCTGCTCTGATTTGACCGCCGTCGTCTAGAACGACTTCTCCGCAAGCGAGGAACGCCGTCCGCAAACGAGGAACGCCGTCTCTCCAGGCCGTAGCCTACGCTGCAAGAATGGGAACGGTGCTCTCCATATCTCCAACATCGAAGAAGGAGGCTATTCTGGATGACAGAAAAGAGGGTGACCACGCAATCAAAACGGGGAGCGTAAAGAACAATTCCATGCTTGTCCCAGTTCTCACATTGAAGAAACTGTTTACCACATCGACCAAGAGAAATAGTTGTAAGAAAGTCAACCCGAACGCCGCACAGGTGAACAACAACAGCCACGTAGACCAGCAAAATaatgaaaataacaaaaaatcCCAGCAATCGAGTACGGATGGTAAGAAAGCACCACTTGCTGTACCAGTGCCGGTGGTTCCTACCCAGAGCCTTGAACCTAACCAGCCCCAGGTTCCCTCTGAGAATGTGAAGCTTTCGCCTGACCAAAAGCAACCTAGTAAAGTAGACCTCTCGCCGAGGCGTGTGATTATCCAGGCATCGACCGGGGAGCTGTTGCGCTGTCTTGGCGAATTTGTGTGCAGGAGATGCTGTAAAGTCAAGCTCACCTACAATGAGGTCATCCTATGGTTCCGAAATGTCGACCGAACCCTTCTCCTCCAAGGCTGGCAGGACCAGGGATTCATTACACCTGCCAACTTAGTCTTCGTCTACCTGCTCTGTAAGGAATCGATACCCGATGATATCGACAGCGCATCTGAACTCCACGGTAtcttcctgctctgtctctatctatcctACTCGTACATGGGTTGCGAGATATCATACCCTCTGAAACCATTCATGATTATGGAAAATGAGGATCATTTCTGGGATTGTTCTATGAGCATCATCAATAACACGAGTGCCAAAATGTTGCAGTTAAATGCAGACCCGCACTTTTTCACGGAGGTGTTTCAAGAGCTAAAAGATGAAGGCGAGTCGAGGGACAAAGACTTGGACCGTTAAATCAAATGAGGGCTCCGATGTATGTTTCACAAAACCCCTGACATAGTGGTTTGAATGTACTATTCAACAGTTTAAAACTAATTGTATTGCGTAACCACGGCTCAGTATATGCATGTTGTATTCTAAATGTAGACCAATCTCCTTTTTGTACCCTTCTGCGAATACTGTAGGATAGTCACAGGGCCTCCGTGGATCAATGGAAAATCTGCAAATACATAAATGTGTGGGTAATATGGACGACTTTTATAATTGCCTTGATGTTCACTTATGGAGTTTTGTTGTGGGCAAAAGAATAGCAGTATGTTATGCGTCGAGAGGTGGAGCTATCCAAGGTACTGGCGTAGCCTTTACGCATCGTAAACCTATGCTAGCACTTAGGACATAGACGGGAATGCACAAGGAAAGGGATTCTTTAGCATAATTTGTGCCAATTATCACAATATTAAACACTGTGGTTTACATCATATTTATTTTTAACTATTATAGCAGATTGTTTCCATttgaaaaaaagtatattttaatttaaaaaataattgttgCCATTTTGTTGATGTACTTGTTGAAGTGAcacaaaaaaataagttacaatgGTTTATTAATGTAATTTACCCTATTTGTGAACTTGTAATGGTGCAATAGATACTGGTCAAGGCTGGTGGTTGTTTTCAGCATTTGTAGGTGCATCTCTTCAATCTACTGTTTCTCTGTGGCTCAGTGCTCTGCATTGAAACATTGGAGCCTGAAAGAAGGCCCTGGCAATATCATGTAATTGTGTTTTATTTAAACTAGTGCAGCATTCACTAACAGTAAAGCATTTACCTTATTTAGTGTCAAGGTCAGATGCTAGTGCTTGAAGGAACTGGACTGTTACCCCTACTGATTGGTTCAGAAGATGGACTTTTCTTCGACATCTGATGAGCCACCGTGTTCACAGTTAGCTGATCTGTTACTGTGGCTCATTtgcatatgtttttttttttatcatacaTGGCTTTCACTTGcacaatgtgattttatgtgCTCAGAGCAATCAGGAACAACTCTGGTATAGCACTCATTTCTGGAGAGCTGTTCTCAAACAAACAATGTAATGTAAACAATGCGACGATGGACAAGTATTGACAGTTCACTAGTGTATGTTATTGCTGTGGAATTAAAGAACTTGAGAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299893 lncRNA upstream 4086 46003868 ~ 46004113 (+) True G263760
TU299891 lncRNA upstream 5620 46002349 ~ 46002579 (+) True G263758
TU299890 lncRNA upstream 6591 46001388 ~ 46001608 (+) True G263757
TU299889 lncRNA upstream 9104 45998810 ~ 45999095 (+) True G263756
TU299855 lncRNA upstream 44688 45963185 ~ 45963511 (+) True G263724
TU299896 lncRNA downstream 1374 46012021 ~ 46012220 (+) True G263763
TU299897 lncRNA downstream 1586 46012233 ~ 46012460 (+) True G263764
TU299902 lncRNA downstream 9042 46019689 ~ 46021765 (+) True G263769
TU299864 lncRNA downstream 37402 46048049 ~ 46056003 (+) False G263732
TU299865 lncRNA downstream 37402 46048049 ~ 46056003 (+) True G263732
XM_021597002.2 mRNA upstream 75177 45903665 ~ 45933022 (+) True LOC110520033
XM_036974278.1 mRNA upstream 124005 45852182 ~ 45884194 (+) True LOC110504149
XM_021596998.2 mRNA upstream 184898 45726239 ~ 45823301 (+) True asic4a
XM_021596999.2 mRNA upstream 186908 45726237 ~ 45821291 (+) False asic4a
XM_036974276.1 mRNA upstream 186924 45726237 ~ 45821275 (+) False asic4a
XR_005046468.1 mRNA downstream 22118 46032765 ~ 46043845 (+) True LOC118957146
XM_036974285.1 mRNA downstream 331201 46341848 ~ 46441801 (+) False LOC110520040
XM_021597013.2 mRNA downstream 332599 46343246 ~ 46441801 (+) False LOC110520040
XM_021597014.2 mRNA downstream 332612 46343259 ~ 46441801 (+) False LOC110520040
XM_036974293.1 mRNA downstream 332619 46343266 ~ 46441801 (+) False LOC110520040
TU299841 other upstream 73781 45934119 ~ 45934418 (+) True G263710
TU299672 other upstream 168719 45838921 ~ 45839480 (+) True G263547
TU298041 other upstream 1482791 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1755648 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 5556019 40440069 ~ 40452180 (+) False LOC110519969
TU299866 other downstream 64837 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 173487 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 820361 46831008 ~ 46832134 (+) False LOC110520046
TU300304 other downstream 820361 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other downstream 820361 46831008 ~ 46832204 (+) True LOC110520046

Expression Profile