RNA id: XM_036974297.1


Basic Information

Item Value
RNA id XM_036974297.1
length 3880
RNA type mRNA
GC content 0.55
exon number 30
gene id LOC110504152
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46458590 ~ 46544295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgcggtgtaaTCGGTGACGTATGAGTAGACTAGACTCTTTACTGTACTCGTTGGGTCAGCACTGCAGAGATTAGTTTGCTACACAGACAGGGATTCCTGAACCCGAATCATGCACATCGTCATTACAACTAAATGGGAGTGGAGCAGAAATTGTGCAAGATATGGATAGATTCCGTTGGTCCTATAAATATTGCGCGGTCGTTGCTTCGATTCAAGTTTCCACATAGTCCCCCATTCCATTATAATGCTGCTCGAGGACTCGGCTCTTTGGAACCATCGTGGTGTGCTGATTTCCTCACGTGGGTTTTCTGTTAAAAGTGGCGAGGCTGGGATAAACACAGGAACATTTGCAAACAAGAGGCATTAGCGCGGGTACAtttgtttcgtttttttttttgttgacttGCTGTGATTTCTGAAGTCGAGGAGGAAGGTGTAACGTTAGGTAGTTGTGATCCAGcaacaaacaacaaaaaaaacaagctgAAACATGGGGAACGCAGGGAGTATGGACCAGCAAACTGATTTCAGGGGACATAACATGCCTCTGAAGCTGCCTATGCCGGAGCCAGGCGAATTGGAGGAGAGATTCGCAATCGTTTTGaACTCTATGAACCTTCCTCCAGACAAAGCGCGACTATTGCGGCAGTACGACAACGAGAAGAAGTGGGAACTTATCTGTGATCAGgaACGATTCCAAGTGAAGAACCCCCCCCACACATACATCCAGAAGCTGAGGGGCTTTTTGGACCCGGCCGCCACCAGGAAGAAATTCAGACGGAGGGTGCAGGAGTCCACCCAGGTCCTGAGAGAACTGGAAATTTCATTAAGGACCAATCACATAGGGTGGGTGAGAGAGTTCTTAAACGAAGAAAACAAAGGCCTGGACGTACTGGTGGAGTATCTGTCTTTTGCGCAGTACGCTGTCAcGTTTGATGGCGACAGCGTGGAGAACAACCCGGAGAAGTCGGTGGACAAGCCCTGGAGCAGATCCATAGAGGACCTGCACGGGGGGAGTAACCTCCCGTCCCCCGTCAGCGGGAACAGCATTACCCGCGCCGGGCGACACGCCACGCTACGTTACCTCCTGACACAGGCTGACAAGTCAAGGACACCGAGCTCTTTGAAATGCCCAAAATATTCGCAAGGACGATGTTGCAACGCGTTGCCGAGCCGGAGAACTCTGAAGAACTCCCGGCTGGTCTGTAAGAAGGACGACGTCCACGTCTGCATCATGTGCCTGCGAGCCATCATGAACTACCAGTACGGCTTCAACATGGTGATGTCCCACCCGCACGCTGTGAATGAAATTGCACTAAGTCTGAACAATAAGAATCCCAGAACCAAAGCTCTGGTGTTGGAGCTGCTGGCCGCCGTGTGTCTCGTGAGGGGGGGACacgaaatcattctctctgcgtTCGACAACTTCAAGGAGGTGTGTGCTGAGACGCAGCGGTTCGAGAGGCTGATGGAACACTTCAAGGACATGGACAACAACATCGACTTTATGGTGGCGTGTATGCAGTTCATCAACATCGTAGTCCACTCGGTAGAGGACATGAACTTCCGGGTTCACCTGCAGTACGACTTCACCAAGCTCTGTCTGGACACCTACCTGGATAAGCTGAAGCACACGGAGAGTGACAAGCTGTCGGTGCAGATCCAGGCCTACCTGGACAACGTGTTTGACGTGGGCGCCCTGCTGGAGGACGCCGAGACCAAGAACGCCGCGCTGGAGCgcgtggaggagctggaggagaacaTGTCACATATGACGGAGAAGCTGCAGGACACGGAGAACGAGGCCATGTCAAAAATCGTGGAGCTGGAGAAACAGCTGATGACGCGCAACAAGGAGCTCGACTCGATCCGGGAGGTGTACAAGGACGCCAACTCGCAGGTGCACACACTGCGGCGGATGGTGAAGGAGAAGGACGAGGCCATCCAGAGGCAGTGCAACCTGGAGAAGAAGATCCACGAGCTGGAGAAGCAGGGCACCATGACGATCCAGAAGAAGGGCGACGAGGATATCTCCAACCTGCCCTCGCCGCCCGCCCCCGGGGGCCCGCTGGTGGCTGGCGTGCCAGGGGTCTATAACGGGGGCACAGTCAGCCCGATGGGGTCGAATGGGATCCCGGGGATGCCCGCgccgccccctcctcctcccccaccgcTTGTGCCTGGGACGGtACCAAATGGGCCTTTGGCTGGTCCCAtcgctcctccccctcccccgccGCCCCCTCCTCCCCCGCCTCCCCCCGGCCCCATGGAGGTGTCTGCTCCCCTGCCCCCGCCTCCACCCCCCATGGCCCCCCCGCTCCCGGGCTGTGGATCCCCCACCGTCATCTTCAATTCAGGGTTAGCAGAGGGGCCCATCAAACTGTTCTCCGTGAAGATTAAAAAGCCCATCAAGACCAAGTTCCGTTTGCCCGTGTTCAACTGGGTGGCGCTGAAGCCCAACCAAATCAACGGCACTGTGTTCAACGAGATCGACGACGAGAGGATACTGGAGGACCTGAATGTGGATGAGTTTGAGGAGATGTTCAAGACGAAAGCCCAGGGACCGGCCATCGACTTGATCATGAGCAAGACCAAGGTCATCCAGAAGGGGCCCAACAAGGTGGCACTGCTGGACGCCAACCGGGCCAAAAACATGGCCATCACCCTGAGGAAAGTGGGAAAGGCCCCTGAGGAGATCTGCAAGGCCATCCAGCTGTTTGACCTGCGCACCCTGTCGGTGGACTACGTGGAGTGTCTGATGCGCTTCCTGCCCACGGAGAGCGAGGTGAAGATCATGCGTCAGTACGAGAAGGAGAGGAAGCCCGTGGAGGCGCTGACGGACGAGGACCGCTTCATGATGCACTTCAGCAAGATCGAGCGGCTCATGCAGAAGATGACCATCATGGCCTTCATTGGCAACTTCTGCGAGAGCGTGCAGATGCTGACGCCGCAACTCCATGCGGTCATCGCAGCATCTGTGTCAATAAAGTCCTCACAGAAACTCAAGAAAATTCTCGAAATCATCTTGGCGCTCGGAAACTACATGAACAGCAGCAAACGGGGAGCAGTATACGGTTTCAAGCTACAGAGTTTAGATTTGctactGGACACCAAGTCGACAGACCGGAAAATGACTCTGCTGCACTACATAGCCAACGTGGTGAAGGAGAAGTACCAGCAGGTCAATCTGTTCTACAACGAACTGCATTACGTGGAGAAGGCCGCAGCAGtGTCgttagagaacgttctgctggATGTGAAGGAGCTCCAGCGGGGAATGGACCTGACCAAGAGAGAGTACAGCATGCACGGTCACAACACCATGCTCAAAGACTTCATCACACACAACGAGGGCAAGCTGAAAAAGCTGCAGGACGAAGCCAAGATCGCGCTGGACGCCTTCGACGAGGCCGTCAAATTCTTCGGCGAGAATTCCAAAACGACGCCCCCGTCCGTGTTCTTCCCGGTGTTTGTGCGCTTTGTCAAGGCCTACAGGCAAGCGGAGGAGGACAACGAGCAAAGGAAGAGAGCAGAGCTGATGATGATGGAGAAGCTTCTGGAGCAGGAGGCCATGCTGGACCAGGAGGACCAGAAGTCTCCGTCCCATAAGAACACCCGGGGCAGGAGTCAGCAGCAGgaggtgatagctgagctgaggaAGAAGCAGGTGAAGGATACGGGCAGCCGCCACGTCTACGAGGGAAAGGACGGGGCCATCGAGGACATCATCACGGTGCTGAAGACAGTGCCCTTTACCGCCCGCACAGCCAAACGGGGCTCTCGGTTCTTCTGCGAGCCGGTTCACAATGAGGAGAACCATTACTAAAGCTTAGAACTCTCTCTCTGAAAGCCCTAAAGAAGAATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300101 lncRNA upstream 120814 46337038 ~ 46337776 (+) True G263962
TU300091 lncRNA upstream 139390 46318948 ~ 46319200 (+) True G263952
TU300083 lncRNA upstream 150017 46308356 ~ 46308573 (+) True G263944
TU300078 lncRNA upstream 156136 46302235 ~ 46302454 (+) True G263939
TU300076 lncRNA upstream 157665 46300702 ~ 46300925 (+) True G263937
TU300220 lncRNA downstream 34404 46576728 ~ 46617406 (+) True G264067
TU300391 lncRNA downstream 323020 46865344 ~ 46865560 (+) True G264229
TU300392 lncRNA downstream 324513 46866837 ~ 46867059 (+) True G264230
TU300418 lncRNA downstream 368066 46910390 ~ 46910659 (+) True G264255
TU300423 lncRNA downstream 374094 46916418 ~ 46917336 (+) True G264259
XM_036974285.1 mRNA upstream 16789 46341848 ~ 46441801 (+) False LOC110520040
XM_021597013.2 mRNA upstream 16789 46343246 ~ 46441801 (+) False LOC110520040
XM_021597014.2 mRNA upstream 16789 46343259 ~ 46441801 (+) False LOC110520040
XM_036974293.1 mRNA upstream 16789 46343266 ~ 46441801 (+) False LOC110520040
XM_021597011.2 mRNA upstream 16789 46343408 ~ 46441801 (+) False LOC110520040
XM_036974307.1 mRNA downstream 181731 46724055 ~ 46773948 (+) False LOC110520045
XM_036974308.1 mRNA downstream 181731 46724055 ~ 46777392 (+) True LOC110520045
XM_021597024.2 mRNA downstream 258734 46801058 ~ 46832288 (+) False LOC110520046
XM_036964882.1 mRNA downstream 478671 47020995 ~ 47027946 (+) True LOC110504153
XM_021597026.2 mRNA downstream 576404 47118728 ~ 47133302 (+) False LOC110520048
TU299995 other upstream 273786 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 379165 46075484 ~ 46079425 (+) True G263733
TU299841 other upstream 524172 45934119 ~ 45934418 (+) True G263710
TU299672 other upstream 619110 45838921 ~ 45839480 (+) True G263547
TU298041 other upstream 1933182 44520419 ~ 44525408 (+) True G262037
TU300303 other downstream 288684 46831008 ~ 46832134 (+) False LOC110520046
TU300304 other downstream 288684 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other downstream 288684 46831008 ~ 46832204 (+) True LOC110520046
TU303780 other downstream 2968479 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 3012174 49554498 ~ 49555838 (+) True G267381

Expression Profile