RNA id: XM_021597020.2


Basic Information

Item Value
RNA id XM_021597020.2
length 4367
RNA type mRNA
GC content 0.48
exon number 28
gene id LOC110520042
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46546837 ~ 46599080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaagtttgcatTATAAGCCCTTCCGCCCTCGTTTTTAGTCGAGTTTGCGAGTGTACGATTATGTTCACTTCGAggcctgaaactccccataattACATGTACATCCGTTAAGAAAAGTCTGCCAAAAATTAAAACCTCAACATCAATATAtggagtcaacatacaagtCGTGGCTGCTGGATGCGCATCGTGAAGTCAACATGTCTTCAGATGATAATAATGGCCAGAGCCAAGCACCTTCTTTTGCTGGGGTCCCACCCTCAGGGATGCCACCGCCTTTTATGGGACCACCAGGAATGCCGCCTCATTATCCACCAATGGGAATGCCACCCATGGGACAGAGGCCTCCCAACATGGCTCCCATGCCACCTGGTATGATGCCACCTGGCATGATGCCACCAATGGGAGGGCCACCCATGGGACAGATGCCAGGCATGATGCCACCTATGATGCCTGGGATGATGATGCCACCTCGCATGCCAGCTGCGACGATGCAGCCAACAGGACCGCCTGGAGTGGACACAACTGTCATCGCTATGCCTGGAACAGTTGGTACCACAAATGGCTCGCCACAGGATGACCAACCAAAGAATAAGTCTGTGTGGACAGAACATAAGTCCCTGGATGAGAagacctactactacaacacagagacCAAGCAGTCTTCCTGGGAAAAGCCAGACGACCTGAAATCTCCTGCAGAACAAATGCTGTCTAAATGCCAATGGAAGGAGTACAAATCAGACAATGGGAAGGCGTACTACTACAACTCCCACACTAAGGAGTCCCGGTGGACCAAACCCAAAGAGCTTGAAGATCTGGAAGcCATGATAAAAGCTGAGGAGAATGGGATGGCGGAGGTGGGTGCTCCTGGCACTGTCATCATCACCCCCAACCATCAGCTCGACAGCGTTGCTTCGATGGCGACCATGATGATGGAAATGCCGGCCATGAGGCCAGCTCCAACCGTCTCAGTGGAACAGATGTCCCTGGTGCCCATGCTTGTAGCTGAGGTCAACGCTGACTCGCCTGTCAACTCCACAGAGGACTTGGCCGGCATGGAGGCCTCAGCCAGTAATGACGCCTCAAAAGAGGAGAGGCCAGAGCTGGTGAAGAAAACGTACAAGTGGAACACGAAAGAAGAGGCCAAGCAGGCCTTCAAAGAGCTCCTGAAGGAGAAGGGCGTTTCATCCAATGCGTCTTGGGAACAAGCCATGAAAATGATCATCAATGACCCACGCTACAGTGCTCTGCCGAAGTTAAGTGAGAAAAAGCAGGCCTTCAATGCTTACAAGGTGCAGacggagaaagaggagaaggaggagactaGGATCAAGTACAAGGAATCCAAGGAAATGTATCAGCGATTTTTGGAAAACCACGAGAAAATGACATCTACAACCAGATATAAGAAAGCAGAGCAGATGTTTGCGGAGCTCGATGTGTGGAGCACCGTCCCAGAGAGGGACAGACTGGAGATCTATGAAGACGTCCTGTTCTACCTAGCCAAGAAGGAGAAGgagCAAGCCAAGCAGCTGAGGAAGAGGAACTGGGAGGCTCTGAAGAACATCCTGGACAACATGGCCAACGTGACGTACCGCACCACCTGGTCCGAGGCCCAGCAGTACCTGCTGGACAACCCCACCTTCGCAGAGGACGAGGAGCTCCAGAACATGGACAAAGAGGACGCTCTGATCTGTTTCGAGGAGCACATCCGAGctctggagaaggaggaggaggacgagaagCAGAAGACACtgctgagggagaggaggagacagcgCAAGAACAGAGAGTCCTTCCAGaaattcCTGGATGAGCTCCATGACAACGGTCAGCTCCACTCCATGTCTGCGTGGATGGAGATGTACCCCACCGTCAGCTCAGACATCCACTTCGCCAACATGCTGGGCCAGCCAGGCTCCACTCCCCTCGATCTGTTCAAGTTCTACGTGGAAGACCTGAAGGCTCGCTACCACGACGAGAAGCGGATCATTAAGGATATCCTGAAGGACAAAAACTTCTTGGTGGAGGTAAACACTAGCTTTGAAGACTTTGGCACTGTGATCAGCTCAGACAAGAGAGCCACAACGCTGGACGCAGGCAACATCAAGCTAGCCTTCAACAGCTTGCTGGAGAAGGCAGAGGCtcgggagagggagcgggagaaggAGGAGGCCAGGAAGATGAAGAGGAAAGAGGCTACCTTCAAGAGCATGTTGAAGCAGGCTACCCCAGCCCTGGAACCAGAGGCAACCTGGGAAGAAGTCCGAGAAAGATTCCTCAAAGAATCTGCATTCGAAGACGTGACTCTGGAGTCTGAGAGGAAAAGGATATTCAAAGACTTCATGCATGTCTTGGAGCACGAGTGCCAGCATCATCACTCCAAGACCAAGAAACACTCAAAGAAGTCCAAGAAGCACCACAGGAAGCGCTCCCGCTCTCGATCGgGCTCAGAGTCTGAAGGCGAAGACGATTATCACACCAAGAAGAAGAAGCGCTCACAGTCCAAGTCCCCGTCCGAGCGCTCCTCCAGTGGGGAATCTGATAGAAGTTATAAGAAGTCCAAGAAGCACAAGAAGAAGGGGAAGAAGAGGCGTCACAAGTCGCAATCTCCTGAATCCGAAGGCGAGcggaaagagaagggaggaagagagagggacggCAAGCGGGAGAAGGaccaggagaaagagaaagagaacgacAAGTCCCGGGGGAAGAGTCGCTCCGAATCCAAGCAGAAGTCACCTAAAAGGAAATCTACCAAGGAGGAGGGTGGCTGGGACACTTCAGGCAGCGAGCTGAGTGAAGGAGagctggagaagaggaggaggactctACTGGAACAGCTGGATGCTCCTTGATCCTGTTTTTCCTCATGCTTCCTTTCATCCACCATAGATTCCCCCCGGTGCTTATTTTTCAGCGTAATGCCACACATGCTTGGACTTAAGGTTATACAATTCCGGTAACTTTCCCAAACTTCACAggtttttccagaaatcccagttaGAAGATTTGCTTAATTCCTGCCAATTTTTGTCTAAGTTACCAGAATGTTTTCAACCCTTTTTGGACTGTGTGTGAACTATTCCCCTTGTGTTTTGTATAATGGGAATGAACCCGACACCCTGGCACTAGAATGCTTGGTAAATATTTGCTCTGTTTTCTTACGTTATTGGAAGTGGTCACAGGCTGAGTTGAGTGACTACTTTGATATCAGGTCAACTGTGTGGACATTTAGTGACACACTTCAGAAATGTGTTGCCTTTTTTATAATGTTTTCTCGCTAgctattttatttgttttgtagTTGTTTGATATCGAAATGGATTCAAAGAGCATCTTAATGCCATGCTCTTTACTGTGACTGCCTTGCAGTTCTCAGTACAATTCTTATCCGAGTCACAAATGGCACTGTatttattccctttatagtgcactacttttgactagggccctcaaagtaaaaaaatgtatacaaatttAGTTTAGGAAATCTGACAAAATATCCAGCAAATAAAAAGAGATGTGATTGTGTCTCAgtgtaatcaaggtttgaaattattttcaaataaaataaatacatttttgtgcTTAGTTGTgctcaatttgcagtgtacaaattttAATGATTTTCCGGACCTCCGACCATCCGCTCCGACAAAAAAATTGCCCCGCAGCTGAATCTCGTTGCATACCGCTGCTTTGGACTGAGGTAGAACTCTTTGGCAAAGGTCCACGTCTAGACTGAAGTAAATGTCTCTCTGAAACAAGActctttaaaatacattttttatggtATTTTTAGGATTGGTTCGCTAGATTTTCACGAGAGGAATTGTGAAAGTCCTCGTTGCATGATCTATAAATGTAATAAAATACAGTTGACATGAATTTGTTTGTCTTCATGTACCATCACCAGCAGCCACCATAGATCGGAGCTCATTATTTTCTGTACATATGACCTCTCTGTTATGAGTGCCTCTTGTTCACTAGGCTTAGTAGCCTTGTATCCGTTTCCTGTGGATCATTGCAATGCTAGGCAGGCTGAAGGTAATAATTGCTACTGTAAGAGGGAGTGCCCGAGACAACGTGGCTCAGGACAATCTAGATTAAGCTCCAATAACATCACCAGGGCTGTGGCACGGTTGCCGAAGACCGCCAGAAGTGGCAAATCCAAACCTTTGTTGCTGCCCGATGCCCCAAGCCCGCCAGACGGGCGAGTAAAGATTTCCACAGTTTACATACACGGAGATGACAAGACCGACTTCTCCTGTTGTTTTCATATCAATGAGCATGCATAGAAAACCAGAGTGAATCTGAACAGCTGTCTGCCAAAATGAATTGAAATAAAGATGCACACG

Function

GO: NA

KEGG:

id description
K12821 PRPF40, PRP40; pre-mRNA-processing factor 40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300841 lncRNA downstream 109272 46434462 ~ 46437565 (-) True G264657
TU300765 lncRNA downstream 216847 46329741 ~ 46329990 (-) True G264583
TU300764 lncRNA downstream 217392 46329202 ~ 46329445 (-) True G264582
TU300758 lncRNA downstream 224536 46322102 ~ 46322301 (-) True G264576
TU300753 lncRNA downstream 229603 46316978 ~ 46317234 (-) True G264571
TU300948 lncRNA upstream 63259 46662339 ~ 46662639 (-) True G264758
TU300953 lncRNA upstream 72306 46671386 ~ 46671623 (-) True G264763
TU300988 lncRNA upstream 154154 46753234 ~ 46753710 (-) True G264793
TU301091 lncRNA upstream 234031 46833111 ~ 46833339 (-) True G264883
TU301148 lncRNA upstream 316748 46915828 ~ 46916800 (-) False G264935
XM_036974280.1 mRNA downstream 211629 46078061 ~ 46335208 (-) False LOC110504150
XM_036974281.1 mRNA downstream 211629 46078061 ~ 46335208 (-) False LOC110504150
XM_036974283.1 mRNA downstream 211629 46078061 ~ 46335208 (-) True LOC110504150
XM_036974282.1 mRNA downstream 307611 46078061 ~ 46239226 (-) False LOC110504150
XM_036974284.1 mRNA downstream 436089 46078061 ~ 46110748 (-) False LOC110504150
XM_021597022.2 mRNA upstream 119603 46718683 ~ 46721823 (-) True rprma
XM_021597025.2 mRNA upstream 402727 47001807 ~ 47007084 (-) False LOC110520047
XM_036974309.1 mRNA upstream 402727 47001807 ~ 47007117 (-) True LOC110520047
XM_021597028.2 mRNA upstream 539286 47138366 ~ 47145477 (-) True LOC110520049
XM_036974312.1 mRNA upstream 549264 47148344 ~ 47172653 (-) False LOC110520051
TU299385 other downstream 1009295 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 1442574 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 1534588 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 2515332 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 4221059 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 1000138 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 1432967 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 2896397 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 2903336 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 2964768 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile