RNA id: XM_021597053.2


Basic Information

Item Value
RNA id XM_021597053.2
length 2268
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110520059
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47725274 ~ 47748055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTCAGCCACCTGCCCGCATCCTGtacaatggattcaattgagCTAAAATAACTACAtctctgcttttttattttattacgtGCTCCAACTCCTTTCTACCTCGAAAGAGTAAATTGGATATTTGAGAAACAGTTCGTAAATACAAGGACATTTTCCAGTGTCATATAACAACTTCCAATGTCACGTGTTGAGCAATCGGTCATGAGGTTTATTGTGTACAAAAGGTAAGCGCCACCTGTCACCAACAGCACAAGGTCGGCTGATAAAAGGTAAAGAAAGGAAGTGCATCTACTGTGACAAAATGGTGTCATTAATCTGCACGCTCCAGGACCATCGAGATGAAGTATATTGGTGCGCGTTCTCCCCCACACTACTGGCGACTTGCTCCGGGGATAAGACCATACGCATCTATAACACCAATGACTTCTCGGAGTTGCCGTTTTCGCCTCTGTCAGGCCATCGATATGGAGTTCACTGCTGCAGTTTCAGTGTATGTGGCACCTACCTGTTCACCTGTTCCACAGACGCTTTAACTATCATTTGGAGTATGGCAACAGGGGCATCAGATGGAACCTTGGCCCTTTGGGATTTCCACTCTAAGAAATTACGCAAATCTAAGGCCGTGACAGAGGCCACGGTGATGGCGTGCTGCTTCACTCCATGTGGTCAGATGTTTGTGACAGGATGTACATCTGGAGATATCAAAGTgtgggatttggacatgaagcaGCTCTATGCAGAGAGGGATGCCCATGATATGGGGGTGGCCTGCTGCCATTTTGCACCCCAGTTTGACATTGATTTCAGTTCGGTCGAGTTTCGATTGGCCTCCTGTGGACAGGACAGTCAACTGAAGGTATGGATCGTATCTCAGCATGGTGCAGCAGCCTGTGAGATGAAGCTGCTCCACACGCTGACTGGTCAGTCGGCCCCTGTGCTCTCCTGTGCCTTCTCTTCTGATGGTGAGCTGCTTGTCTCAGGCTCAGTGGATAAGACGGTGACCGTGTACAATGCGAGCGATGGAGTCCTCCTTCACACTTTGAAACGGCATGAGAGCTTTGTGACAGCCTGTGCCTTCTCTCCAACCCTGCCCTGGATGGCTACTGGCTCCATGGACAAGAAGGTCAACGTGTGGAGGATAGCAGATAGAGATATCGGGCAGGGAGCAGGAAGGAAGCTGTCAGGTCACTCCAGGCTGCTGGTGAGCGACTGGTCCGAGGAGGATGTGTTGGCCTGGCTGAGTGAGGAGGGTCTGGAGGAGCTGGTCACAACCTTCACAACCAATAACATAGACGGGCCTGAGCTGCTCTGTCTGACCAAGGAGACCCTGGCCTCAGAGCTGAGCATCGAGTCGGTGGGTCTCCGTGGTAAAGTCCTGAGGAAGGTGGAAGCTCTGAAGGCAGAGTTGACGGGACTAGACGCCCCAGatgagttcctctgtccaatCACCAGAGAGGTGATGAAGGACCCTGTCATTGCTGCAGATGGATATTCCTACGAGAGGGAGGCCATTGAGAGTTGGATCAGCGCTAAGAACCGCTCCAGTCCCATGACCAACCTACCTTTACCAACCACTCTGGTCATGCCCAACAGAAGCCTGAAGACCGCTATTGGCCGTTGGACTGCCACTCAGTGATGGATTGGTGTACGAGTAATCAGTAATGCCTTATTCTGAAGCAGACTATAAAATGAGGTCACCCAATTGTTTCCTATGAGAATACTCAGTGGTGCATTTGATGGTCAGGAAGTGTCATTTCAGCATGTCGCCATCTTGCTACATTAAGTTTTTGGAAACATTGCATGCGCAGTTTGAGCTACTCTAGGAAGTGACggtgcaggctagctcagtgctacCCCCTCTCATGGAGAACCTCAAGTTGAAGGCCAACCAGGTACTACAGGCTACCATTAGCAACTAAATGATCCTTAGaactttgtctgtgtgtgattttAAAGGAATTGCTTCAAAGACATACATCCAGTGAAATAGAAATCATGTACCATGATTGTGTTTGGAAAAGGTTTTTATATCCACAAATATTTACCACAAAAATCGCCATTTCCCCATTCACTATAAATGTGGGGTCTTGTTTTCTGgaaacaatgcctgcagtactgTGGTCGGCCTTCAACTTGAAATCATCAATGCGAAGGGGGCATTTCAGAATCAAGACAAATTTGTACAATGTGATCACTGACAATCATTTCACTGCACAGTTCTATTATATACTTTTGATTAAACAAGGGTGATTATTCATGAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302417 lncRNA downstream 4141 47720906 ~ 47721133 (-) True G266090
TU302416 lncRNA downstream 5463 47719480 ~ 47719811 (-) True G266089
TU302407 lncRNA downstream 5900 47719098 ~ 47719374 (-) True G266087
TU302405 lncRNA downstream 7789 47717270 ~ 47717485 (-) True G266085
TU302404 lncRNA downstream 8663 47716369 ~ 47716611 (-) True G266084
TU302355 lncRNA upstream 1638 47749249 ~ 47805960 (-) True LOC110520061
TU302499 lncRNA upstream 142787 47890398 ~ 47891579 (-) True G266169
TU302512 lncRNA upstream 173258 47920869 ~ 47921144 (-) True G266182
TU302516 lncRNA upstream 193897 47941508 ~ 47943184 (-) True G266186
TU302631 lncRNA upstream 318066 48065677 ~ 48066187 (-) True LOC118958229
XM_021597034.2 mRNA downstream 496611 47188482 ~ 47228663 (-) True LOC110520052
XM_021597030.2 mRNA downstream 496613 47188482 ~ 47228661 (-) False LOC110520052
XM_021597031.2 mRNA downstream 499528 47188482 ~ 47225746 (-) False LOC110520052
XM_036974311.1 mRNA downstream 547626 47148344 ~ 47177648 (-) False LOC110520051
XM_036974312.1 mRNA downstream 552621 47148344 ~ 47172653 (-) False LOC110520051
XM_036974336.1 mRNA upstream 2018 47749629 ~ 47789697 (-) False LOC110520061
XM_036974332.1 mRNA upstream 2018 47749629 ~ 47805978 (-) False LOC110520061
XM_021597059.2 mRNA upstream 2018 47749629 ~ 47848192 (-) False LOC110520061
XM_021597062.2 mRNA upstream 2018 47749629 ~ 47848192 (-) False LOC110520061
XM_021597064.2 mRNA upstream 2018 47749629 ~ 47848192 (-) False LOC110520061
TU302286 other downstream 125459 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2187732 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2621011 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2713025 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3693769 43989524 ~ 44031505 (-) True G261580
TU302595 other upstream 284436 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 1747866 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1754805 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1816237 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1816237 49563848 ~ 49567474 (-) True LOC110520112

Expression Profile