RNA id: XM_036974336.1


Basic Information

Item Value
RNA id XM_036974336.1
length 6644
RNA type mRNA
GC content 0.53
exon number 30
gene id LOC110520061
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47749249 ~ 47848192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATATGGATATTTAGTATCTACCATTTCTTCTTGACTATCATTGTTTCTGATTTGCAGATTTGAAAAGCCCTTCGTCTCCCAGGAGCACTTCAAACAGGCCTTCCCTCTGCCAGTGATGCATCAGGATCTGTTCAAGAGCCTGAAGAAAAAGAAAATGGCCGCCTCATCGTCCTCCTCATTAGCACCGCCCTCCTCATTAGCACCGCCCAAACTGTCTCCAGAGACCCCGAGCAGTCTCAGGCTCCCTTCTCCACACACCAACCACTCCAACCTGTTCCTGGCCTCCTCCCTCCTGGGCGCCCACCCCAAAGGGGTGATCCACAGCATTGTGCAGGATGCCCCCCTGGCCCTCATCACCAAGCCTCGCAGCAGCAGTCAGAACAGGAGCACCATCAACAATTCTCTCCTGGCTGCCACCAGCCCACCCTTCTCTATGCCTGTCAACCTGAGCACTGGGCATAAGGAGCAAAGCTCTGGAGCCCTAGGCTGGGCCTCTACCTCACCGGGCCTGGCCCACAGAGCTGGGAAGAGCAAGGCCCAGCAAAAGGCTCTCCACACAGGGAAGGGCATCTCCCAGTCCCAAACCCACCTGGTGCAGTCCCAGGTGGAGCTGTTCCGGGGCACAGAGTCTGACATCCCCAGCAGCAAGGACTCCGACGACTCCGTAGAGGATGAGGATGATGAACATGATGACAACGACGACGAGGAGGATTCTGATGACAGCCTATCAGAGTCTGAGAGTAATCTGGAGAGCGACTCGGACGACGTGAAGGACCGCGACGAGACCACCACGGACACGGAGGCAGATAGGACCCCTCTGAAGCGTGCCAAAGGCTCCTCTTCTCTACTCGACACCACCTCCTCCAGCCTCTCAGCCAGCTGCTCCCCTCTCAACCTCCAGGTCATCAAGGCATCCGGTGGCCTGCCCACCCCAGCCATGGTGACCAGCTCTGGGGCCTTGGTCTACCACAGCACCCCCTCTTCCTCATATACTCTCTGCTCCACTCCACCAGgaacagggaagagaaggagagtgacAGATGAGAGAAAGCTGCGGACACCTCTAGAGTTTGGGTGGCAGAGAGAGACTCGTATCTGTAATGTGGCGGGCCGTCTGCAGGGAGACGTGGCGTATTACGCCCCGTGTGGGAAGAAGCTCCGGCAGTACCCCGACGTGATGAAGTATGTGTCCAGAAATGGAATAAGTGACATCACACGCGATCATTTTAGCTTCAGTGCAAAAATAAGGGTTGGTGACTTCTATGAAGCCAGAGAAGGACCGCAGGGATTGCAGTGGAGCTTGTTGACCGAGGATGAGGTGATTCCTCGTATCCTGGCCATGGAGGGGAGGCGTGGGCATCCCCCTAAGCCTGAACACCAGAGGAGAGGTGACGAGGGCCCCCGGTCCAGGCGCAGTAAGGGTCGACTTCCTAACGTTGGCGAGGCCGACTTCCCAGGCGCCACTGACGCCAAACTTCTACGCAAACTAGAAGCTCAAGAGATAGCTCGACAAGCAGCCCAGATTAAAATGATTAGGAAACTTGAAAAGCAGGCCATGGCACTAGCAGCCAAGGAGGCTAGGAAACAACAAGcaatcatGGCTGCTGAGGAGAAGCGGAAACAGAAGGAGCAAGTGAAGATTGTAAAGCAGCAGGAGAAGATCAAGCGCATTCAGCAAATTCAAATGGAGAAGGAGCTCAGAGCGCAGCAGATTCTCGAGACTAAAAGGAAAAAGAAGGAAGAAGCGGCAAATGCCAAAATAATGGAGGCTGAAAAACGAATCAAGgagaaggagatgaggaggcAACAAGCAGTCATTTTGAAACACCAGGAGTTGGAGAGGCATAGACTAGATATGgagagagagaggcggaggcaGCACATGATGCTGACGAAGGCCATGGACGCCCGTAAGAAAGCAGAGGAGCGGGAGCGCTTAAAGCAGGAGAAGAAGGATGAGAAACGGTTAAACAAGGAGAGGAAATTGGAGCTTAGAAGACTGGAACTGGAAATTGCCAAGGAGCTGAAGAAGCCAAATGAAGACATGTGCTTAGCAGATCACAAGCCTCTCCCGGAGTATTCCCGTATTCCCGGCCTGGTTCTACCAGGAAGCAGCTTCTCTGACTGCCTGATGGTGATGCAGTTCCTGCGGAGCTTTGGGAAGGTGCTGGGCTTCGACGTGGACGCCCACATACCCAACCTGAGcgtgctgcaggagggcctgctCAACCTGGGAGACAGCATGGGACAGGTCCAGGACCTGCTGGTGCGCATGCTCTCTGCTGTGGTGTGTGACCCCGGACTGCCCCCAGGACACCGGACCAAGACGGCCCTGGGGGACCACCTGAGTAATGTGGGCATCAACCGGGATAACGTGTCGGAGGTGCTGCGGGTCTACATGGAGGCTCACTGTGGGGGGACGGAGCTGCAGACTGACCTGGGAGAGGTCACGGCCAGTCTGAAGACCAAGGCTTTCCAGgcccacacagccacacagaagGCCTCGGTCCTGGCCTTCCTGGTCAACGAGCTGTCCTGCAGTAAGAGTGTGGTCAGCGAGATCGACAAGAACATCGATCACATGACCAACCTGCGACGGGACAAGTGGGTCATCGAGGGCACGCTTCGCAAGCTGAGGACCAGCCACGCCAAGAAGACTGGGAAGAGGGACAGCggtgtggggggagaggagaTCCAGTCCCTGGGTACATCCACCCCCGGACAGAAACgcaagaggaaaggaggggacagcgaggaggatgaggatgaggacgAGGACAGCGAGGATCAGGGGGATGAAGACgacgatgaggaggaggaggaggagagagggaagaaagggaAGAAAGTGGAAACCTGTGAGGATGAGGATGATGGGGACCAGACATCCAGTGTAGAGGAGCTGGAGAAACATATCGACAAATTAACCAAGcAACAGAGTCAGATCAGACGGAAGTTGTTTGAGTCATCCCACTCGTTGCGCTCCATGATGTTCGGCCAGGACCGCTACAAGCGCCGTTATTGGGTACTGCCACAGTGTGGGGGCGTCTTTGTGGAGGGTATGGAGAGTGGCGAAGGAGCAGAGGAGctggaaaaggagagggagagactgaggcgCACAGAGCTGGTCCAGGTGAAGGAGGAGGTGGAAAGGAGGCCacaggaggtggaggggaggctAGGGGCGTCCACCGTGGAGGGTAGCCGTGACAAGCACACCGCCACACCAGACAAGCACACCCTCAACCTCTTCCTCCAGAAGCCCGGCTCCTTCTCCAAACTCAGCAAACTCCTGGAGGTGGCCAAGATGTCCCCGGACTCAGACAACCACCCTCACAGTCTGAGCTGTAGTGTAGCCAAAGTCCCCACCACAGTATCTTCCCCTATCCGCCCTACCATTCAGACTACACTACCCAGCAACCCCTCTGCATCTCCCGCTCCGCTGTGTCCAGAGGTGAAAGCGGAGCCTTCCACAGCCCTCCTCAGCCCGTCCTACCTCAGCAGCGGCCCAGGGAAGATGTCCTCCAGCCCCCAGCAGCTCCAGCCCAATGACCAGCTCTTCAGGGTGCTGACAGAGAAGAACTGCCACTGGTTCAGCCTGCTTCCCCGCTCCCCGTGTGACGAGTCGTCCGTCAGCACCagctccaccaccacccccccgGCCTCCTCCCCCTATTCCTCCTCAACCACCAGGCCCAAgtccccctcctccctgtcttctAATCCCCTAGCCTCCACATCAGCCAGCCCCAGCAATCTCACCACTGGGATCAATAACTTCCCTTTTTCAGCTCTCCAGCAGGTGAAGTCTGGCGTCCATATGATAGGTCTGCCATTCTGTGGATGGCCCGGTGGCATGATGATCCCCACCCTGCCCTTCTCTGCCAGTCCACTGCCCCCCTCCACGCTGGCCGCTGCCTACCACCATGTGGAGGGTAACAGCAACCCCTTCCTGGCAGTGCCCCCTGGAGAGAAGCCCCCCTCTGCCCCGTCCAACGTGGTGGAGGTGGCCAAGACCCAGGACTACCCCGACCCACTGCCCATTCCAGAGGagatGCTGTCAGGCTGGTGGAGAGTGGCAGACATGGAGGAGTTGAGGAGCTTGGTCAAGGGCTTGCACAGCAGAGGTATCAGAGAGAGGGCCCTGCAGAAACAGATCCAGAAACACATGGAGTTCATTGCACAGGCATGTGCCAAAAACAGGGATGTGGCGGTGATAGACGAGTCCAAGCTGGAAGAGAACGGGGTGAGCGAGGAGGCAGTGGAGAGCTGGTGTGTGGAGGAGCAGGCCATGGAGATGGACATCGCTGTTCTGCAacaggtggaggagctggagaggAAGGTCACTTCGGCCAGCCTGCAGGTTAAGGGTTGGATGTATCCGGAgccccagtcagagagagaggacctGGTCTACCATGAACACAAGCCCTTCACTAAGCTGCTTCTAGCAGGAGAGGAGCAGCTTGCAGGGGAGGAGGCGGCCAAAGGCGGCTGCAGCCTGGTGCGGCGCGTCAACAACCCCCTAGATATAGCTGTAACACGGCTAGCCGAGCTGGAGAGGAACATCGAGCGAAGGGGGGAAGAGGAACTGGCCCCGGGCATGAAGGTATGGCGCAAGGCCATGGGCGAGGTCTGCAGCGCCGCCCAACTGTCTCTCTGCATCCAGCAGCTCCAGAAGTCTATTGCCTGGGAGAGATCCATCATGAAAGTGGCAAGCGGTCAATCCCCCAAGAATaagaagaagcagcagcagcagcagcagagccgAGCGGGGGCAGCCGGGCGAGGAGGGAAGACAACCACCGAGGTAAAACAGAACAGGAAACCGTCGTCTGTAGCCAGCGGAGAGATCTCTGAGGACGATGCTGCCAGCACCAGCAGCAGCACGCCAAAAAAAGTGAGTAAAGAGCCCAAAAAGAGGAAGAGCCCAGGAGAGGGGAGCCCAGCCACCAACCAGTCCAAGCAGGACAGTACTCCCGTCTGTGTGAAGAAGGCGAAGATGGCCACATCAGCCAGAGACAATGAAAAGGATCTGACATTGTGCAGGGTGCTACTGGTTGAGCTGGAGGGTCACCAGGATGCCTGGCCCTTCCTTAACCCTGTCAACCCCAAATCTGTCCCTGGCTACAAGAAAGTCATCAGGAAACCCATGGATTTCTACACAATCCGAGAGAAGCTCGTCCACAGCCAGTACTTGAACCTCGAGACGTTTATAATCGACGTTAACTTGGTTTTTGATAACTGTGAAAGGTTTAATGAAGACAATTCGGACATTGGACGAGCCGGACACAACATGAGGAGTTTTTTTGAGAGTAGATGGAATGAGCTGTTAAAACAAACCAACTAGGCTAGTTTGGACTACTTTATCCTCACTATACTGTATGGGACCAGCAGTAACCACAAGCAGAGCAGCTGGATTGGTCTAAAGTCTCTCCGTCAGCATCCAGGGAACCTAAATGAATTTACAATTGTAATTCTACACATTCACTTCAGTGATGTACAGTAGAATGCAGTTTCTTTTTTTAAGAGCAGAGAAATGCACCCAAAGGGATACACACAAAAGGGGTGGGTGTTTTTAAAGTGCAATACCATTTCCTAGAAGAAACCACATCGGAGCTGCAACTGGGAACAAAACGTTCCAACTAACTGTacttagtttattttttattttttaatattaaTATTAAAGTGAATGTATTTAATTTAGTCAATTATTTATGAGTGAAAATGGTTCCGTTTTCTAAGACGAGGAAGAAAAAAGCAAAACTGCTTGAACAAAAATCTCAcggaatgtttttattttatttttttggacATAAAACTAAAGCCAAGAGAAAAAATTAATTGTTTACACTGCTCTGTGCCGCCGGGGTACCACAAGATTCCTGACGGTATTACTGTAACACTGCATTTCAATGTATCTTTACATTGCTCGCTAACTTCACACGGACAGTGAGGCAGCAATGACATCTGTATATACTATTCATTCATGTTAATATGAAGTATTGTTTGTAAtatgtgtacatacagtattgTTACAAGACATTCAATATTGTTTATGCCTTTGATTGTGGTGTTTCATTTCAGTCTAAAGTGATAAATACATGTATATTACCTGTGATGTATATCCTCTGCAAACACTGTGGTCTCTTCAATCTGGGTAATGCCTGCCCTCTCAAATGTGTGTGGAGGTAATTATTTCAATCTTTTGGTTTAGCATTCCTTcaaaaggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtacaaaATGTCAACTCTGGTGGGCCTCGAATTCTGACATTATCATCCTATCGTCAGTACAGAATCCATTGTGATGCACAGTACCTTTCATAAAAGATGTTCTCTCCATTTGCTTTGCCACAGACCCAAGGACACAGGGCGTTTGTAATAACCACTGTGTTTGAATCTGGCTGTGTCATGCATGGTCTACTGGTGCCATGTACAGCATTTTCTTTGTACCTGAGTCAGAGTACTTGAAGTTATTTTATTTATGAATATTGTGGGGAAAAGTCACTTTTTTTTGTAGGAGCATAATTTTTCACTAGTGTATGGGGCACGGATCTAATATAAAGGATCTTTTTCAACTCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302432 lncRNA downstream 1574 47747583 ~ 47748055 (-) True LOC110520059
TU302417 lncRNA downstream 28496 47720906 ~ 47721133 (-) True G266090
TU302416 lncRNA downstream 29818 47719480 ~ 47719811 (-) True G266089
TU302407 lncRNA downstream 30255 47719098 ~ 47719374 (-) True G266087
TU302405 lncRNA downstream 32144 47717270 ~ 47717485 (-) True G266085
TU302499 lncRNA upstream 100701 47890398 ~ 47891579 (-) True G266169
TU302512 lncRNA upstream 131172 47920869 ~ 47921144 (-) True G266182
TU302516 lncRNA upstream 151811 47941508 ~ 47943184 (-) True G266186
TU302631 lncRNA upstream 275980 48065677 ~ 48066187 (-) True LOC118958229
TU302703 lncRNA upstream 284369 48074066 ~ 48075575 (-) True G266359
XM_021597050.2 mRNA downstream 2014 47725274 ~ 47747615 (-) False LOC110520059
XM_021597052.2 mRNA downstream 2015 47725274 ~ 47747614 (-) False LOC110520059
XM_021597051.2 mRNA downstream 2017 47725274 ~ 47747612 (-) False LOC110520059
XM_021597053.2 mRNA downstream 2018 47725274 ~ 47747611 (-) False LOC110520059
XM_021597034.2 mRNA downstream 520966 47188482 ~ 47228663 (-) True LOC110520052
XM_021597068.2 mRNA upstream 66019 47855716 ~ 47861197 (-) True LOC110520063
XM_021597072.2 mRNA upstream 81172 47870869 ~ 47910791 (-) False LOC110520064
XM_021597070.2 mRNA upstream 81172 47870869 ~ 47918292 (-) False LOC110520064
XM_036974339.1 mRNA upstream 81172 47870869 ~ 47918293 (-) False LOC110520064
XM_021597069.2 mRNA upstream 81172 47870869 ~ 47918294 (-) False LOC110520064
TU302286 other downstream 149814 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2212087 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2645366 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2737380 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3718124 43989524 ~ 44031505 (-) True G261580
TU302595 other upstream 242350 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 1705780 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1712719 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1774151 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1774151 49563848 ~ 49567474 (-) True LOC110520112

Expression Profile