RNA id: TU302355


Basic Information

Item Value
RNA id TU302355
length 3141
lncRNA type sense_over
GC content 0.44
exon number 2
gene id LOC110520061
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47749249 ~ 47848192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACTCGGTCAGATGTGTCTCAATCGAAAGTTTCCTGCATTAGAAAGCCGTGGCCGGGGCAGACGGAGCCCTTCATCACTGTCTAGGAAGGGAGGTAGTGGACGTCAAGGCCGGAAAGGATTGACCGACAGACGAACGCAAGCAGAAttgaggtctgtctgtctctctgccgtGCTGTTTGATGCTCAGTGGAGCCGTCCTGGCATTTCATCTGAACTACGAATGTTACCAGTGAACTACAGATGCATCCAGCCATGCTGACCTGAGCCACTTTCCAATTTCCCGATCAACCTCCTCTGTATCAACCAGCCACCACAGTGAGCTACTATCCTCGCAGGCAGATGCACAGAAGTATaaacaaaaaaaagacaaataatTCACTTCTGCTGGGTGAACTCTGAAGGGGATTGGGAGTGAGGTGGGGGTGAaagttattttttttctctctctctctggctctgtgatGTGCTGTTCAGGTCGGATTATCCTCTTCTGCCTTTTTAACAACCCCTTCCATCCATCGATCCCACTGTGCCGCAAATCACGCCGTCTCAACAGTGGCCCAGCTATTTGTCCAGTGTAGCAGAAGCCTCGTTAATTGTGTTCAGTGGACACTGGTgatttttgtgtcggtaaaaatAATCTACCAGTGTCACCAGGCAACCATGCAGAGCGCCAGGTTAAGACACTGCTCACGCTTCAAGAGATTGTTTTTGTCCCTGTCGGGGGCTACAGCTAATCATTACACCATTTAAGGTCATAGAGAATGAATGCAGTGGATCCACAGACCACGGTTATCACGTGAACTAGAGTGTTAGGCTTATTTCTCCATTTACTTATTGTTTGTGTCACTTATTCATTTATGTGTAAAGTAGGGATAAACACTGGTAGCCGGGATCCCAGGATCACTCTTCACATTTcctaaaaaaatgtaattacaaGACCTGGGAAATTACAACATTTTCCCCACCAATGTCACACTATTGAAATTCCACGAAATACACAACATATGCAGCAGCAGATTGGCAAGCAAAATGTATGGCACGTTATCCAAACAGGTTGTCGCATGGAAGCCTTTTGTTTACTTCACACAAAGTCGTCATAAATTCCAAGCACATGCATAATTGACACTGCCAGACTGCACATGAGACCTGAAATACAGTTGAGTTCTCCTCAGAACTGAAAATTCTATCCAGGTCCGATCCAAGCCCGGTGAGCTGAAAGCCAGAGCCCAGGCTTGGTATGACATCACAGAAATTAAATGAGcccgaatacacacacacaaaagaaaaGTCTGATTTCTACAAAACAGTAGGCAAAATTGATTTGAACTGAAGTTGAGAACAACACAGTGGAGGTGGGCGGCAGcggagagaagagatgaggaaaCAGCCATTGGGCCTAGAaaaagcacagagagaggaacacTCACCTTAGTTATGATCAACTGATGAtgaaaatattgaaatgaagaagGCTAATGCACTTGAAGGCATGTATCAAATTCTTGCTTATACCGAAACTCCCAAAGTAATATGCAACTGTtacactacactgaacaaaaatataaacgcaacatgcaacaattttactaagttacagttcatataaggaaatcagtcaattgaaataaatgaattgggccctaatctatggatttgacaACTGGGCAGGGGCAAAGCCATGGgtgggagccaggcccatccaatggggagccaggcctacccaatggggagccaggcctagccaatcagaatgagtttcccccccccaaaaaatacctttattacagacagaaatactcctcagttttatcagctgtccgtgtggctggtctcagatgatcccgcaggtgaagaagccggatgtggaggtcctgggctggcgtggtttcaCGTGGTCTTTGGTTGTGTGGCCGGTTGGTCGTACTGCCATATTCTTTAAAGCGACGTTGGAGGccgcttatggtagagaaatgaacattcaattatatGGCAACAaatctgttggacattcctgtagtcatcatgccaattgcacgctctctcaacttgaaacatctgtgacattatgttgtgtgacaactgctaattttagtggctttttattgttcccagcacaaggcgcacctgtgtaatgatcatgctatttaatcatcttgatatgccacacctgtcagttggatggattatcttggcaaaggagaaatgctcactaactggaATGTtatcaaatttgtgcacaaaattggagagaaataaacTTGTGCTTATGGAAagttttatttcaactcatgaaacataggaccaacactttacatgttgccttttatatttgttgttcaatttaaagcaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtacaaaATGTCAACTCTGGTGGGCCTCGAATTCTGACATTATCATCCTATCGTCAGTACAGAATCCATTGTGATGCACAGTACCTTTCATAAAAGATGTTCTCTCCATTTGCTTTGCCACAGACCCAAGGACACAGGGCGTTTGTAATAACCACTGTGTTTGAATCTGGCTGTGTCATGCATGGTCTACTGGTGCCATGTACAGCATTTTCTTTGTACCTGAGTCAGAGTACTTGAAGTTATTTTATTTATGAATATTGTGGGGAAAAGTCACTTTTTTTTGTAGGAGCATAATTTTTCACTAGTGTATGGGGCACGGATCTAATATAAAGGATCTTTTTCAACTCTGTATTTTGCATTCCGTCATATTTCATTTCCATACTATAACTACAAATATTTGTGTTGGTAGGATATCTTGGgcaaacactgagtgtacaaaacatcaggaacaccttcctaatattgagtttgcaTCCCTTTTTGCCCTGAGAACAGTCTCAATTCCTCGGgttgtggactctacaaggtgtcgaaagcgttccacagggatgctggcccatgttgactccaatgcttcccatacttgtggctggatgtcatttggttggcggaccattcttgatacacacaggcaactgttgagcgttaaaaatccagcagcgttgcagatcttgacactcaaaccggtgagcctggcacctactccCATACCCCgttcacatacacaatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302432 lncRNA downstream 1194 47747583 ~ 47748055 (-) True LOC110520059
TU302417 lncRNA downstream 28116 47720906 ~ 47721133 (-) True G266090
TU302416 lncRNA downstream 29438 47719480 ~ 47719811 (-) True G266089
TU302407 lncRNA downstream 29875 47719098 ~ 47719374 (-) True G266087
TU302405 lncRNA downstream 31764 47717270 ~ 47717485 (-) True G266085
TU302499 lncRNA upstream 84438 47890398 ~ 47891579 (-) True G266169
TU302512 lncRNA upstream 114909 47920869 ~ 47921144 (-) True G266182
TU302516 lncRNA upstream 135548 47941508 ~ 47943184 (-) True G266186
TU302631 lncRNA upstream 259717 48065677 ~ 48066187 (-) True LOC118958229
TU302703 lncRNA upstream 268106 48074066 ~ 48075575 (-) True G266359
XM_021597050.2 mRNA downstream 1634 47725274 ~ 47747615 (-) False LOC110520059
XM_021597052.2 mRNA downstream 1635 47725274 ~ 47747614 (-) False LOC110520059
XM_021597051.2 mRNA downstream 1637 47725274 ~ 47747612 (-) False LOC110520059
XM_021597053.2 mRNA downstream 1638 47725274 ~ 47747611 (-) False LOC110520059
XM_021597034.2 mRNA downstream 520586 47188482 ~ 47228663 (-) True LOC110520052
XM_021597068.2 mRNA upstream 49756 47855716 ~ 47861197 (-) True LOC110520063
XM_021597072.2 mRNA upstream 64909 47870869 ~ 47910791 (-) False LOC110520064
XM_021597070.2 mRNA upstream 64909 47870869 ~ 47918292 (-) False LOC110520064
XM_036974339.1 mRNA upstream 64909 47870869 ~ 47918293 (-) False LOC110520064
XM_021597069.2 mRNA upstream 64909 47870869 ~ 47918294 (-) False LOC110520064
TU302286 other downstream 149434 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2211707 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2644986 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2737000 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3717744 43989524 ~ 44031505 (-) True G261580
TU302595 other upstream 226087 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 1689517 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1696456 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1757888 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1757888 49563848 ~ 49567474 (-) True LOC110520112

Expression Profile