RNA id: XM_021597069.2


Basic Information

Item Value
RNA id XM_021597069.2
length 3889
RNA type mRNA
GC content 0.40
exon number 14
gene id LOC110520064
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47870869 ~ 47918295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGCTGTTTGGTTCCAGGGTGAGGTCTCCCAACAACGAGAGAATTGACTGACAGAAAAACCGAATTGAAGGAAATACTGAAGTAACCTTCAGTTCCGGCGCGACTAGTTCATCTTTCTATATTCATGGGAAAAGTGTGGCAACAACAGATGTACCCCCAGTACTCCTATTACTACCCCCGATACCTGCAAGCGAAGCCACCTGTTGTCTCCTCCTCCCAGCCCATGGCTCCGCCCAGCCCCAGCACCAACAGCAGCACCAACAACAGCAGTAGCTCCAGCACTGCAGGTTGGGAGCAACTcagtaaaaccaacctgtacatCCGAGGCCTTGCCCCAGCCACCACCGACCATGATCTGGTCAAGCTTTGCCAGCCgTATGGCAAAATTGTATCAACAAAGGCCATCCTGGACAAGACGACAAACAAATGTAAAGGTTACGGCTTTGTGGACTTTGATAGCCCTGCTGCAGCTCAGAAAGCTGTCACTGCCCTGAAGACCAGCGGGGTCCAAGCCCAGATGGCTAAGGTGAGGCAACAAGAACAAGACCCAACCAACCTGTATATCTCCAACCTGCCGCTGTCGATGGACGAGCAGGAGCTTGAGACCATGCTCAAGCCCTTTGGCCAGGTCATCTCTACCCGAATACTGAGGGACTCCAATGGAACCAGTAGAGGAGTGGGCTTTGCAAGGATGGAGTCGACAGAGAAATGTGACTCCGTTATCTCTCACTTCAACGGGAAGTTTATTAAGACACCACCTGGAGTTACTGtgCCACCGGAGCCCTTACTGTGTAAGTTTGCTGACGGCGGGCAGAAAAAGAGACAAAGCCAGTATACATTTTTGCAGAACAGCCGTGCGTGGGCTAGAGACGGCGATGCTAGACTGGCTGGAATGACCCTCACGTACGACACCACCACAGCGGCTATGCAAAACGGATTTTATGCGTCTCCATACAGCATCGGAAACAGGATGATTGCTCAAACGTCCATGTCTCCATATCTCTCACCTATCTCCACGTACCAGGTACAGAATCCCTCCTGGGTTACTCACCAGCCCTACATCATGCAGCACCCAGGAGCGGTGATATCGCCCTCTATGGACCATACTATGTCACTACAGCCTACATCCATGATGAGCCCTCTCACTCAGCAGATGAGTCATCTCTCCATGGGTAGCACAGGAACGTACATGGCTGCAAACTCTATGCAAGGAGCCTATATTCCCcagtacacacacatgcaggccaCAAATGTTCCAGTGGAGGACAACAGTCAGCAACAACAGGTGGAGTCATCAAGTGATCATTCCCCTTACACCTACCAACAAACAAAGTAATACGGAGGTGTGGTAGGAGCCCAGAAGACAGAGTGGGATGACAGTTGAAACAATCATGGCTGCTTCTGGTGATGGATTGTGCGTTAAGGATTTATCCCCATTTTGTACAGAATTCTGCAATGATTTACTTTTGTTTGTGATAAGAAAAACAAGTGAGACAATTTTGGTATGTCCCATGAGGTGCAAATAAGTGATTCATTTCATCCAAGGATTCAAATTctctaaaaaaaaaataagaaaaagtaGTTGTATTTTACTAAAGaaagaatgtttattttttaccaaGAATTGTCACATGGATGCAAGAACCTATAGAGGATCATGTGACTTGTTGTTTATGGTGCATGGTAGTAAAGATGTCTTTTGttaatattttttataattttaatTGAGTTTTTCCTCTTATTTTGTACTGAAATAGAATTTTCTGAAGTTGTATTATTTATCTTGAAAATGATGTTTTGTGCTTGCTGTGtgagtgttgctatggtgacgtGTTAAATGTTTCTTATTGTAAAGTGATGTATCTTAGTGGTCTAGATTGATCTTTCCATCTAGACTACAGTAGCTGTATAGGCAACCTCCTAGGCTAGAAATGAGGAAGTCATGGTGAGAGCTATTGCCTTGTAAATCAGTGAAATAGGGCTTTTCCTTTGGATATAGCAAAATAAATCTGCTGTGTTTAAATGTTCTTGCTTTTCCCCTCTGAAAATGAATCTAAAGTAGAAGTTTTCGAGAAAAAAATGTTTAGAGTGAAATTACCCCTAAATCTGATGATGTTTTAATAGAATGTAATGTTTGTATAATCACAGGGCCTTAAATGTCTCTGGTTGTTTGAATGTGCTAGAAATTCTGTTGAATTATCACATTTTGAATCTTGCCTTTTTTGATTACTTGGTGTTGTAGATTAGCCTAAAATTAGCTTCTAGGGGTGGGGATGGAATAAGGGAGGGTGTGGTTGTGTCTTTTTGGGGGATTTTGTTGTTCTTTTTCACTTTCAGTTGAAATGCAAAGAGGCAAACTTCGATTTATCAAAGCCTTCCAGTGCAACTTACGTTTAATGGAGTTTTAGTTGGGGAAAAATGAGATGAATATGTAGATATTATTGCACCCAGCTCTTTGATAGGAAACAAACAAGCTCGGCACTTTCAATTATGATTTACTTCACCAAAGAACTGTGAGCTAGTAAATTGAGGAAATAGTTTAATTTCTCTTTCTAACCAGGATGTAATTGACTTTTTGCCAGACTAGATTGCAGTTTGGAGAATGTGCCTTTTTTGTACATTTACATTCAGTTGTCATACGTGTTATGGGAAAATATGGACACAAACAAGCATGAAGGACGATTTGGATCCAACAAGTGCCACACACTGATTTCGTCACTACAGAAAAATGGAAAATGCAACGTTATCAAACGAATTGAACCAGGAAAGAAGACAGTTTGAAACTATGAAATTTcaaaaaatacaataataatttgttttaaCATTGTGCAACAGAATGTTATTGCTAAAGTTTGATAATTTTTTATCATAGTAGATTTGAACAGGCTTTATGATTAAGTTGTCTTCCAGAAGCCTGTGTTCTGGCCAATAGATGGTATGTTCTGGCCTGATGGTTGCACAGACCGACCAGTTATCTACCTCAGAGTTTACTTTCTCCTCTGTATTGAGCCGGGTTAGCAGGTCCAGCCCGCCCTTCCAGACCAAACGCCATGCTCAGGAGCTGGCAATATACACTTGTTTTCTTTCAGGTTGTTTTTAATACTTTTTGATTTTCTTCACAATAATTGTCATTCGGAGGAAAATTGTGCGTTGAGCGTGTTTTAGTTGTTCAGAATTTCAGTTTCATAGTTTCAAAAGTAGAACTGCTGCTTTCATCACAATTCCAGATTCCAGAGGCTAATAAAAGTGGTTGAagataaataaaagctgaaagttGTGGTATTTCCTGGATCTGTGCTCCTGAGAACATCATTGTTGCTTTGTCAGAGTCCAGACAGGCTTGCAGCAGCATTTCCTCTGCAGTCAGCTTCAGTTGAGTTACCAAAGTAAAGGGCCATTGTGACTATACTGGAGATTTCTATGAAACGCCTGAGACTGATAACTAATACTGTTGAATTATTGTGAGGGTTATGCTGCTAGTAATGTCTGAACCAAGTGCCAAACTGCGTCTGGGTCAAGAGTTGGAAGGGTGCATAAAGAAGGAAAAGCTCATTTAATTAACCATCATGTTAAATAGTCATTCAGTTATATTGAAAAGTAGTAATTTATGAAGACAGAAGTTTTGTACAGATCGTTTGAAGAAACAAAAGATTTTCATAGAGATATCTATATAAGAGTAAATATTatactttattattatttttttttttacatgtgccACACATTTGCCAGTGGTAACTTGTATGTCCAGTTTATGAAAACTTTCCtctatatttttgttttgtagaGTTTGTTAAagccaaaaatatttttttcagtaCATTGTTACTTAAGCGTTATTTCTGTTCATTTCTtcgaatttaaaaaaaaataaaaacttccATTGgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302355 lncRNA downstream 64909 47749249 ~ 47805960 (-) True LOC110520061
TU302432 lncRNA downstream 122814 47747583 ~ 47748055 (-) True LOC110520059
TU302417 lncRNA downstream 149736 47720906 ~ 47721133 (-) True G266090
TU302416 lncRNA downstream 151058 47719480 ~ 47719811 (-) True G266089
TU302407 lncRNA downstream 151495 47719098 ~ 47719374 (-) True G266087
TU302512 lncRNA upstream 2575 47920869 ~ 47921144 (-) True G266182
TU302516 lncRNA upstream 23214 47941508 ~ 47943184 (-) True G266186
TU302631 lncRNA upstream 147383 48065677 ~ 48066187 (-) True LOC118958229
TU302703 lncRNA upstream 155772 48074066 ~ 48075575 (-) True G266359
TU302704 lncRNA upstream 158286 48076580 ~ 48076886 (-) True G266360
XM_021597068.2 mRNA downstream 9672 47855716 ~ 47861197 (-) True LOC110520063
XM_036974333.1 mRNA downstream 22677 47749629 ~ 47848192 (-) False LOC110520061
XR_005047221.1 mRNA upstream 4441 47922735 ~ 47929805 (-) True LOC118958137
XM_021584355.2 mRNA upstream 113742 48032036 ~ 48033434 (-) False LOC110505248
XM_036974345.1 mRNA upstream 115455 48033749 ~ 48045455 (-) False fap
XM_036974344.1 mRNA upstream 115455 48033749 ~ 48045947 (-) True fap
LOC110504154 mRNA upstream 127414 48045708 ~ 48059730 (-) True LOC110504154
TU302286 other downstream 271054 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2333327 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2766606 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2858620 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3839364 43989524 ~ 44031505 (-) True G261580
TU302595 other upstream 113753 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 1577183 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1584122 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1645554 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1645554 49563848 ~ 49567474 (-) True LOC110520112

Expression Profile