RNA id: XM_021584355.2



Basic Information


Item Value
RNA id XM_021584355.2
length 746
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110505248
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48032036 ~ 48033434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTGAGTCGAGTTCTGACTAATGGATTGAGAGTAACAAACGGGCTAGTGCGTCTGTGAGGAAGGTGCCACCTGAGTAAACAGTCATTCATCTCAACTATATAAAGGCTGGCCAGACCTAGAAGGGACCATGAAGCAACTCCAGGGAACCAGAGAGAGCGAAGCCAGAAGACATCGACCAACATTTCTCACACACTCAACAGAGggaatacagGAGGTCAAAAGATGAAAAGCACCCACTCTTTCGCTGGACTTCTGCTCTTGATCATTGTTCAGAGCAGCTGGCAGATCCCGCAGGAGAGCACAGAGGACAACTCTAGCCTGTTGACAGAGGACTCCATGTTCAGTGAGCCAAGGGAGCTTTCAAACATGAAGAGACATTCAGAGGGAACCTTCTCTAACGACTACAGTAAATATCTTGAGTCGAGACGAGCACAAGACTTTGTCCAGTGGCTAATGAACTCCAAGAGAAGTGGTGGTCCCATCAAACGGCATGCAGAGGGTACCTACACCAGCGACGTGAGCTCCTACCTGCAGGACCAGGCAGCCAAGGAGTTTGTGTCCTGGCTGAAGAATGGCCGAGGCAGACGAGAATAGGGCTGCTCTGCTCAGCCACAGAGTCCCCAGTGTCTTATGTCCCTGCAGTCAAGAGAGAATGCAACTCATCCAGAATGACCCCCTTGTTCCATTTCATGTTTTATAACCTGCACCGTCCTCTGGTCATGCTAATAAATCCCCTGACAAGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU302516 lncRNA downstream 88852 47941508 ~ 47943184 (-) True G266186
TU302512 lncRNA downstream 110892 47920869 ~ 47921144 (-) True G266182
TU302499 lncRNA downstream 140457 47890398 ~ 47891579 (-) True G266169
TU302355 lncRNA downstream 226076 47749249 ~ 47805960 (-) True LOC110520061
TU302432 lncRNA downstream 283981 47747583 ~ 47748055 (-) True LOC110520059
TU302631 lncRNA upstream 32243 48065677 ~ 48066187 (-) True LOC118958229
TU302703 lncRNA upstream 40632 48074066 ~ 48075575 (-) True G266359
TU302704 lncRNA upstream 43146 48076580 ~ 48076886 (-) True G266360
TU302706 lncRNA upstream 44365 48077799 ~ 48079009 (-) True G266362
TU302761 lncRNA upstream 110088 48143522 ~ 48143729 (-) True G266416
XR_005047221.1 mRNA downstream 102231 47922735 ~ 47929805 (-) True LOC118958137
XM_021597073.2 mRNA downstream 113741 47870869 ~ 47918295 (-) True LOC110520064
XM_021597069.2 mRNA downstream 113742 47870869 ~ 47918294 (-) False LOC110520064
XM_036974339.1 mRNA downstream 113743 47870869 ~ 47918293 (-) False LOC110520064
XM_021597070.2 mRNA downstream 113744 47870869 ~ 47918292 (-) False LOC110520064
XM_036974345.1 mRNA upstream 315 48033749 ~ 48045455 (-) False fap
XM_036974344.1 mRNA upstream 315 48033749 ~ 48045947 (-) True fap
LOC110504154 mRNA upstream 12274 48045708 ~ 48059730 (-) True LOC110504154
XR_005047293.1 mRNA upstream 32059 48065493 ~ 48066503 (-) False LOC118958229
XM_036974346.1 mRNA upstream 45667 48079101 ~ 48097689 (-) True LOC118958240
TU302286 other downstream 432221 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2494494 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2927773 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 3019787 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 4000531 43989524 ~ 44031505 (-) True G261580
TU304852 other upstream 1462043 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1468982 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1530414 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1530414 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 1833783 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile