RNA id: LOC110504154


Basic Information

Item Value
RNA id LOC110504154
length 3059
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110504154
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48045708 ~ 48059730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAATCCACCAGAAGGGGTATATGACATCATAATGATGATGTGGAGTGAGGATGAGTCATGGGACGTCAATGTGATGTGGCAGGTGCCCCTGGTGGAGCAGCACTACTTCACAGAGTTCTGGAAGTTCCTGAAACACAAATACAATGTGGAGAGGGTCAGTGGGGACTCCTAACTCAAAATCTCCTTCATAGAGATTGACCAGACAAATGCTATCATCATCTGTACGGCCCAGATTCTGGAGAACTACTTGAAAAGGCCTCACGGTGGAGATGACGACGGGATTCAACTTTCAGGTTTGACATTTCTTGATTACGATGATTGCCATCGCAAACAAAAAGGGATGGtgtacaaccACAGTCTGATCCATTACCTGAAGCAGAAGCACAAAAACGCCATATTAAGGAAAGAGCAGAAGGatacagtgccccccccccccccccccccccacagacccTGGGCTTGGCCGTCTCACCCGGCGTTGGGGGAGCCAATAAAATGGAGGAAGCCGAGGAGCACATTCTACAAATCTGTGCAAACTTGGACTCATATACAATTATGACAGTAAACCTTGAGGAAAACAAAAAAGAACAACACTAAAACATTGCCACTGCTGAACAGAGAAAATAGATACTCTTGTTATTTCCAGTAGAGAGAGACAATGAATTAAGAGACGCATATACTGAAACCCTACCTGCGACCTAGGCACCCAGAGCAGTGGGTGGTCCCGAAATAACAGAATTATGAGATAACACGgttattttcatgttctactgtacTTGAAGGCTACCGATAAGattatttttcaaccatttttcATACCAAGTGTCATGACACCCTGTTATACCCCAAATGTACATTCCAAAGTAAGTATCTATGTTTTCCTACAGCTGCAAAAAAGGAGAATCAGAAGGTGAATGTTTGTGCTCAGCATCTACGGCAGTACAAATAGGCCTTGTACCTGAGCAAAACCATCCGCATGTGTGATGCCTTCAGCTTCCTGGACAAATACTTTTACGAGGAGCTGAAGAAGAAAGTGGCCCCTGAGGACGAGGTGGCCATTATTAAGACCGACACAGAGAGATTCCTCTTCACACTTTTTAAAGATAAAGGAATTTCACATTCAGGCGATCATGGATGAAAGAGTGCGAACAACCATGGAAAAGCGGATAGGCATGAAATAGAAGACCCCGTCCAAAGTGAAGCTCAGCTGTGGAAGCTGCAATAAACCAGTCAATGTGAAACACCAATTTAAAGATGGGGTTCAACAATGCTCTACAGTGGAATTGAGGTACTTCCTGGTGACGTGtgatgagaagaagaagaacatcaAGTGGAGTGAGCTGGGTATCCAGTTACCTGCCTCTGACTATGCTGAACATGCTCAATCTGTGGTCGAAGCTCAGAGGATGAAGAATCACTGTATAACATGGTAGCTACAAGAATTGTTGGCAAATAGTAAGGATCGAAATAAATGCGTGATGCTCCCTGTACTTTTGGTAGTTGGACTTAATAAATCAGCCTTATTTTCACTGAAAATTACACATGTTCAAACAGTATGTGACTTTTATATGTTTTATTGCGAAGACCGTTAAATGCGCAATGATATTGGGGGTTTCAGATGCCTTTTTCTTTCTTTTAACAAGTTGCCAATTGCAATTAAATGAATCGTAGTCATTGTCATTTAATTGAATTATGCAATCAGTAAATGTTGAATCAAATGGATAATATGCTTGCATTAAAAAAAGGGATCCTAGAGAAAAGATTCCATTACTTATGTGCCCTAGATATTTCCATGCTTACTCACTGACTCGGAAAAAACGGGTTTAGCAGGAAGAGTGCTGAGAGAGGAAGATGACTAGTTGAATATGATGTGCAAACATTTCACAGTTGTCCTTGATCTGTGCTCCTAGATGAGCTCTTAATGTGTCAGACACTGCATTTGCTTCCGTCAGTAACAACGTAATTACACAATTATTGTCACATACCCTGGATAGGTGCAGTCAAATgtattgttttacagggtcaaccATAGTAGTAAGTCACTCATGggcttaagtgccttgctcaagggcacatcaacagacttttcaccttgtcagcttgggtattcgaaccagcgacctttcggttactggccgaaCTCTCTAACCGGAATGGATCAAACTAAAGATGATAATGAACTTCttcacacttcctctcccctgGGATCCCCTGGTTCCTGTGGGACTTTCTCACTACAGTCCACCTGTTGGCACACATGCTCACGTTAGATCTGACATACAGAAGACAGGTGGTGTTTTTTTTGTGATTTTGCTCTGCTGCTGGAAAATAGATGAATAAGTACACATGGCATTAAGATTGTTGGTAAATTCACGTATCACTTTGTCAATGTCACAGGTATGTGTTACCCTGGCTACTGTGATTTGATAGTTCAGGGAGTTATCAAAGAAAATGATATGAGGGTTTGCCTTAGAAATTGTATGCTTATGACTTTGCCCCTTGGTTACTGTTTTCATTGTtttgttgaatgtttatcctgaATGCATAGCTTTCTGGATATTTCCAAAACACAAATTCCTGCCATGTGTAAAGTGTATGAGGAGGCAATAAACTGGGGCAGAATCTGCTTTGATGTGTGTTTGGTTTCAATTATTTCTGCATGGTGTGTAGACGATGTGCAAATATTTGGACTTTACAGATATACAATTGAATGGTTATTTATCCACAAAATGCACAGAAATCCACAAATTGCAAATGTATTCGATATAATTGCCAAGCTTAACGATGTTCACTGATAATAACTGGACGATTTATGATATGCGCTGAATGGAAAAGTCACTTCCTAAATCTTCACAAATTCGGCGCCATCGGAAAGTTATGTGGGCTGTTGACTTGGAGGAGGCATCCCTGTGACTATTTAATCAAGAATCTATACTTTTTGTCTGCGCTATGTCAATTGTTTGACATCCAGAGAGAGTGCGAAGAAGTCGACTGTCACTCCACGTCAGCGAACCGGATTCCTCAGGTTGAGAGCTACATGTCCACTCCCGGGTGAAT

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302516 lncRNA downstream 102524 47941508 ~ 47943184 (-) True G266186
TU302512 lncRNA downstream 124564 47920869 ~ 47921144 (-) True G266182
TU302499 lncRNA downstream 154129 47890398 ~ 47891579 (-) True G266169
TU302355 lncRNA downstream 239748 47749249 ~ 47805960 (-) True LOC110520061
TU302432 lncRNA downstream 297653 47747583 ~ 47748055 (-) True LOC110520059
TU302631 lncRNA upstream 5947 48065677 ~ 48066187 (-) True LOC118958229
TU302703 lncRNA upstream 14336 48074066 ~ 48075575 (-) True G266359
TU302704 lncRNA upstream 16850 48076580 ~ 48076886 (-) True G266360
TU302706 lncRNA upstream 18069 48077799 ~ 48079009 (-) True G266362
TU302761 lncRNA upstream 83792 48143522 ~ 48143729 (-) True G266416
XM_036974345.1 mRNA downstream 253 48033749 ~ 48045455 (-) False fap
XM_021584355.2 mRNA downstream 12274 48032036 ~ 48033434 (-) False LOC110505248
XR_005047221.1 mRNA downstream 115903 47922735 ~ 47929805 (-) True LOC118958137
XM_021597073.2 mRNA downstream 127413 47870869 ~ 47918295 (-) True LOC110520064
XM_021597069.2 mRNA downstream 127414 47870869 ~ 47918294 (-) False LOC110520064
XR_005047293.1 mRNA upstream 5763 48065493 ~ 48066503 (-) False LOC118958229
XM_036974346.1 mRNA upstream 19371 48079101 ~ 48097689 (-) True LOC118958240
XM_021597081.2 mRNA upstream 54504 48114234 ~ 48170057 (-) False LOC110520070
XM_021597082.2 mRNA upstream 174090 48233820 ~ 48269471 (-) False LOC110520071
XM_021597083.2 mRNA upstream 174090 48233820 ~ 48269471 (-) False LOC110520071
TU302595 other downstream 12406 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 445893 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2508166 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2941445 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 3033459 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 1435747 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1442686 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1504118 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1504118 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 1807487 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile